Clc02G08640.1 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc02G08640.1
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	B box-type domain-containing protein
Location	ClcChr02: 10357591 .. 10357977 (+)
Sequence length	387
RNA-Seq Expression	Clc02G08640.1
Synteny	Clc02G08640.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTAGAGGTGTAGAAGAGGGAAACCACGGTCACGGTGGTTGCCAGCGGTCTCCGGTGGCTGAGAAGGGCGGTGTTTCGGTGGCGGACGCAGTGATGTGCGAGCTCTGCAACTCAAAGGCTTCATTGTACTGCCAAGCAGATGATGCATATTTATGTAGGAAATGTGACAAATGGGTTCATGGTGCCAATTTCTTAGCCCTCAGGCATATTAGGTGCATTCTCTGTAATGTTTGCCAAAACCTTACACAAAAATATCTCATGGGAACCTCAACTGAGGTTCTTCTCCCTACCATCATCACTTGCACCAAAGCTAATGACTGTAACAATGGCAATCTTAACACATGTTGTTCAGTAATGCTCAAAAGGCCTTTTCTCTTTTTGTGA

mRNA sequence

ATGTGTAGAGGTGTAGAAGAGGGAAACCACGGTCACGGTGGTTGCCAGCGGTCTCCGGTGGCTGAGAAGGGCGGTGTTTCGGTGGCGGACGCAGTGATGTGCGAGCTCTGCAACTCAAAGGCTTCATTGTACTGCCAAGCAGATGATGCATATTTATGTAGGAAATGTGACAAATGGGTTCATGGTGCCAATTTCTTAGCCCTCAGGCATATTAGGTGCATTCTCTGTAATGTTTGCCAAAACCTTACACAAAAATATCTCATGGGAACCTCAACTGAGGTTCTTCTCCCTACCATCATCACTTGCACCAAAGCTAATGACTGTAACAATGGCAATCTTAACACATGTTGTTCAGTAATGCTCAAAAGGCCTTTTCTCTTTTTGTGA

Coding sequence (CDS)

ATGTGTAGAGGTGTAGAAGAGGGAAACCACGGTCACGGTGGTTGCCAGCGGTCTCCGGTGGCTGAGAAGGGCGGTGTTTCGGTGGCGGACGCAGTGATGTGCGAGCTCTGCAACTCAAAGGCTTCATTGTACTGCCAAGCAGATGATGCATATTTATGTAGGAAATGTGACAAATGGGTTCATGGTGCCAATTTCTTAGCCCTCAGGCATATTAGGTGCATTCTCTGTAATGTTTGCCAAAACCTTACACAAAAATATCTCATGGGAACCTCAACTGAGGTTCTTCTCCCTACCATCATCACTTGCACCAAAGCTAATGACTGTAACAATGGCAATCTTAACACATGTTGTTCAGTAATGCTCAAAAGGCCTTTTCTCTTTTTGTGA

Protein sequence

MCRGVEEGNHGHGGCQRSPVAEKGGVSVADAVMCELCNSKASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCNVCQNLTQKYLMGTSTEVLLPTIITCTKANDCNNGNLNTCCSVMLKRPFLFL

Homology

[Close]

BLAST of Clc02G08640.1 vs. NCBI nr
Match: KAA0042428.1 (Zinc finger protein CONSTANS-LIKE 14 [Cucumis melo var. makuwa])

HSP 1 Score: 243.4 bits (620), Expect = 1.0e-60
Identity = 117/139 (84.17%), Postives = 122/139 (87.77%), Query Frame = 0


Query: 1   MCRGVEEGNHGH----------GGCQRSPVAEKGGVSVADAVMCELCNSKASLYCQADDA 60
           MCRGVEEGNHGH          GGC++SPV +KG VS A  +MCELCNSKASLYCQADDA
Sbjct: 1   MCRGVEEGNHGHRHGHSHGHGRGGCRQSPVIQKGDVSAAGVLMCELCNSKASLYCQADDA 60

Query: 61  YLCRKCDKWVHGANFLALRHIRCILCNVCQNLTQKYLMGTSTEVLLPTIITCTKANDC-N 120
           YLCRKCDKWVHGANFLALRHIRCILC+VCQNLTQKYLMGTSTEVLLPTII CTKANDC N
Sbjct: 61  YLCRKCDKWVHGANFLALRHIRCILCDVCQNLTQKYLMGTSTEVLLPTIIACTKANDCNN 120

Query: 121 NGNLNTCCSVMLKRPFLFL 129
           NGNLNTCCSVMLKRPFLFL
Sbjct: 121 NGNLNTCCSVMLKRPFLFL 139

[Close]

BLAST of Clc02G08640.1 vs. NCBI nr
Match: TYK13446.1 (Zinc finger protein CONSTANS-LIKE 14 [Cucumis melo var. makuwa])

HSP 1 Score: 243.4 bits (620), Expect = 1.0e-60
Identity = 117/139 (84.17%), Postives = 122/139 (87.77%), Query Frame = 0


Query: 1   MCRGVEEGNHGH----------GGCQRSPVAEKGGVSVADAVMCELCNSKASLYCQADDA 60
           MCRGVEEGNHGH          GGC++SPV +KG VS A  +MCELCNSKASLYCQADDA
Sbjct: 1   MCRGVEEGNHGHGHGHSHGHGRGGCRQSPVIQKGDVSAAGVLMCELCNSKASLYCQADDA 60

Query: 61  YLCRKCDKWVHGANFLALRHIRCILCNVCQNLTQKYLMGTSTEVLLPTIITCTKANDC-N 120
           YLCRKCDKWVHGANFLALRHIRCILC+VCQNLTQKYLMGTSTEVLLPTII CTKANDC N
Sbjct: 61  YLCRKCDKWVHGANFLALRHIRCILCDVCQNLTQKYLMGTSTEVLLPTIIACTKANDCNN 120

Query: 121 NGNLNTCCSVMLKRPFLFL 129
           NGNLNTCCSVMLKRPFLFL
Sbjct: 121 NGNLNTCCSVMLKRPFLFL 139

[Close]

BLAST of Clc02G08640.1 vs. NCBI nr
Match: KGN63276.1 (hypothetical protein Csa_022167 [Cucumis sativus])

HSP 1 Score: 236.1 bits (601), Expect = 1.7e-58
Identity = 113/133 (84.96%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 1   MCRGVEEGNHGHG----GCQRSPVAEKGGVSVADAVMCELCNSKASLYCQADDAYLCRKC 60
           MCRGVEEGNHGH     GC++SPV +KG VS A  VMCELCNSKASLYCQADDAYLCRKC
Sbjct: 1   MCRGVEEGNHGHAHGRDGCRQSPVIQKGVVSAAGVVMCELCNSKASLYCQADDAYLCRKC 60

Query: 61  DKWVHGANFLALRHIRCILCNVCQNLTQKYLMGTSTEVLLPTIITCTKANDC-NNGNLNT 120
           DKWVHGANFLALRHIRCILCNVCQNLTQKYLMGTSTEVLLPTII C +ANDC NNGN N 
Sbjct: 61  DKWVHGANFLALRHIRCILCNVCQNLTQKYLMGTSTEVLLPTIIACAEANDCNNNGNRNP 120

Query: 121 CCSVMLKRPFLFL 129
           CCSVM KRPFLFL
Sbjct: 121 CCSVMFKRPFLFL 133

[Close]

BLAST of Clc02G08640.1 vs. NCBI nr
Match: XP_022986418.1 (B-box domain protein 30-like [Cucurbita maxima])

HSP 1 Score: 202.2 bits (513), Expect = 2.7e-48
Identity = 102/131 (77.86%), Postives = 108/131 (82.44%), Query Frame = 0


Query: 1   MCRGVEEGNHGHGGCQRSPVAEKGGVSVADA-VMCELCNSKASLYCQADDAYLCRKCDKW 60
           MCRGV E    HGGC+    AEKGG S   A VMCELCNS+ASLYCQADDAYLCRKCDKW
Sbjct: 34  MCRGVVE-QRSHGGCRDFSAAEKGGDSAEGAVVMCELCNSRASLYCQADDAYLCRKCDKW 93

Query: 61  VHGANFLALRHIRCILCNVCQNLTQKYLMGTSTEVLLPTIITCTK-ANDCN-NGNLNTCC 120
           VHGANFLALRHIRCILC+VCQNLT KYLMGTST+VLLPTI+TC +  NDCN N NLNTCC
Sbjct: 94  VHGANFLALRHIRCILCSVCQNLTHKYLMGTSTQVLLPTIVTCDQPPNDCNGNRNLNTCC 153

Query: 121 SVMLKRPFLFL 129
           SV LK P LFL
Sbjct: 154 SVRLKTPVLFL 163

[Close]

BLAST of Clc02G08640.1 vs. NCBI nr
Match: KAG6570870.1 (B-box domain protein 31, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010718.1 B-box domain protein 31, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201.4 bits (511), Expect = 4.5e-48
Identity = 101/131 (77.10%), Postives = 108/131 (82.44%), Query Frame = 0


Query: 1   MCRGVEEGNHGHGGCQRSPVAEKGGVSVADA-VMCELCNSKASLYCQADDAYLCRKCDKW 60
           MCRGV E    HGGC+    AEKGG S   A VMCELC+S+ASLYCQADDAYLCRKCDKW
Sbjct: 1   MCRGVVE-QRSHGGCREFSAAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKW 60

Query: 61  VHGANFLALRHIRCILCNVCQNLTQKYLMGTSTEVLLPTIITCTK-ANDCN-NGNLNTCC 120
           VHGANFLALRHIRCILCNVCQNLT KYLMGTST+VLLPTI+TC +  NDCN N NL+TCC
Sbjct: 61  VHGANFLALRHIRCILCNVCQNLTHKYLMGTSTQVLLPTIVTCNQPPNDCNDNRNLSTCC 120

Query: 121 SVMLKRPFLFL 129
           SV LK P LFL
Sbjct: 121 SVRLKTPVLFL 130

[Close]

BLAST of Clc02G08640.1 vs. ExPASy Swiss-Prot
Match: Q1G3I2 (B-box domain protein 30 OS=Arabidopsis thaliana OX=3702 GN=MIP1A PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.8e-21
Identity = 56/132 (42.42%), Postives = 78/132 (59.09%), Query Frame = 0


Query: 1   MCRGV---EEGNHGHGGCQR-SPVAEKGGVSVADAVMCELCNSKASLYCQADDAYLCRKC 60
           MCRG    EE    +GGCQR    + K  VS      CELC   A++YC+AD A+LCRKC
Sbjct: 1   MCRGFEKEEERRSDNGGCQRLCTESHKAPVS------CELCGENATVYCEADAAFLCRKC 60

Query: 61  DKWVHGANFLALRHIRCILCNVCQNLTQKYLMGTSTEVLLPTIITCTKANDCNNGNLNTC 120
           D+WVH ANFLA RH+R ++C  C+ LT++ L+G +  V+LP I    +  + ++ +    
Sbjct: 61  DRWVHSANFLARRHLRRVICTTCRKLTRRCLVGDNFNVVLPEIRMIARIEEHSSDH---- 117

Query: 121 CSVMLKRPFLFL 129
                K PF+FL
Sbjct: 121 -----KIPFVFL 117

[Close]

BLAST of Clc02G08640.1 vs. ExPASy Swiss-Prot
Match: Q9LRM4 (B-box domain protein 31 OS=Arabidopsis thaliana OX=3702 GN=MIP1B PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.2e-20
Identity = 51/104 (49.04%), Postives = 67/104 (64.42%), Query Frame = 0


Query: 1   MCRGV--EEGNHGHGGCQRSPVAEKGGVSVADAVMCELCNSKASLYCQADDAYLCRKCDK 60
           MCRG+  EE     GG  RS          +  V CELC+  AS++C+AD A+LCRKCD+
Sbjct: 1   MCRGLNNEESRRSDGGGCRSLCTRP-----SVPVRCELCDGDASVFCEADSAFLCRKCDR 60

Query: 61  WVHGANFLALRHIRCILCNVCQNLTQKYLMGT-STEVLLPTIIT 102
           WVHGANFLA RH+R +LC  CQ LT++ L+G     V+LP++ T
Sbjct: 61  WVHGANFLAWRHVRRVLCTSCQKLTRRCLVGDHDFHVVLPSVTT 99

[Close]

BLAST of Clc02G08640.1 vs. ExPASy Swiss-Prot
Match: Q9LJB7 (B-box zinc finger protein 32 OS=Arabidopsis thaliana OX=3702 GN=BBX32 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-12
Identity = 33/85 (38.82%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 34  CELCNSKASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCNVCQNLTQKYLMGTSTE 93
           CELC ++A L+C AD A+LCR CD   H +NFL  RH R ++C  C++LTQ ++ G    
Sbjct: 5   CELCGAEADLHCAADSAFLCRSCDAKFHASNFLFARHFRRVICPNCKSLTQNFVSG---- 64

Query: 94  VLLPTIITCTKANDCNNGNLNTCCS 119
              P +    +   C+  + ++CCS
Sbjct: 65  ---PLLPWPPRTTCCSESSSSSCCS 82

[Close]

BLAST of Clc02G08640.1 vs. ExPASy Swiss-Prot
Match: O82256 (Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana OX=3702 GN=COL13 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.8e-07
Identity = 32/94 (34.04%), Postives = 45/94 (47.87%), Query Frame = 0


Query: 33  MCELCNSKASL-YCQADDAYLCRKCDKWVHGANFLALRHIRCILCNVCQNLTQKYLMGTS 92
           +C+ C+S  +L YC+AD A LC  CDK VH AN L  +H R +LC+ C          T 
Sbjct: 12  LCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCETE 71

Query: 93  TEVLLPTIITCTKANDCNNGNLNTCCSVMLKRPF 126
             VL           +C+  +     S+  +RPF
Sbjct: 72  RSVL---------CQNCDWQHHTASSSLHSRRPF 96

[Close]

BLAST of Clc02G08640.1 vs. ExPASy Swiss-Prot
Match: Q9C9F4 (Putative zinc finger protein At1g68190 OS=Arabidopsis thaliana OX=3702 GN=At1g68190 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.0e-07
Identity = 25/50 (50.00%), Postives = 34/50 (68.00%), Query Frame = 0


Query: 33 MCELCNS-KASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCNVCQN 82
          +CE C + +A +YC AD A LC  CD  VH AN L+ RH+R +LC+ C+N
Sbjct: 13 VCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSCKN 62

[Close]

BLAST of Clc02G08640.1 vs. ExPASy TrEMBL
Match: A0A5D3CSP7 (Zinc finger protein CONSTANS-LIKE 14 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold61715G00010 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 5.1e-61
Identity = 117/139 (84.17%), Postives = 122/139 (87.77%), Query Frame = 0


Query: 1   MCRGVEEGNHGH----------GGCQRSPVAEKGGVSVADAVMCELCNSKASLYCQADDA 60
           MCRGVEEGNHGH          GGC++SPV +KG VS A  +MCELCNSKASLYCQADDA
Sbjct: 1   MCRGVEEGNHGHGHGHSHGHGRGGCRQSPVIQKGDVSAAGVLMCELCNSKASLYCQADDA 60

Query: 61  YLCRKCDKWVHGANFLALRHIRCILCNVCQNLTQKYLMGTSTEVLLPTIITCTKANDC-N 120
           YLCRKCDKWVHGANFLALRHIRCILC+VCQNLTQKYLMGTSTEVLLPTII CTKANDC N
Sbjct: 61  YLCRKCDKWVHGANFLALRHIRCILCDVCQNLTQKYLMGTSTEVLLPTIIACTKANDCNN 120

Query: 121 NGNLNTCCSVMLKRPFLFL 129
           NGNLNTCCSVMLKRPFLFL
Sbjct: 121 NGNLNTCCSVMLKRPFLFL 139

[Close]

BLAST of Clc02G08640.1 vs. ExPASy TrEMBL
Match: A0A5A7TI11 (Zinc finger protein CONSTANS-LIKE 14 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold266G00060 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 5.1e-61
Identity = 117/139 (84.17%), Postives = 122/139 (87.77%), Query Frame = 0


Query: 1   MCRGVEEGNHGH----------GGCQRSPVAEKGGVSVADAVMCELCNSKASLYCQADDA 60
           MCRGVEEGNHGH          GGC++SPV +KG VS A  +MCELCNSKASLYCQADDA
Sbjct: 1   MCRGVEEGNHGHRHGHSHGHGRGGCRQSPVIQKGDVSAAGVLMCELCNSKASLYCQADDA 60

Query: 61  YLCRKCDKWVHGANFLALRHIRCILCNVCQNLTQKYLMGTSTEVLLPTIITCTKANDC-N 120
           YLCRKCDKWVHGANFLALRHIRCILC+VCQNLTQKYLMGTSTEVLLPTII CTKANDC N
Sbjct: 61  YLCRKCDKWVHGANFLALRHIRCILCDVCQNLTQKYLMGTSTEVLLPTIIACTKANDCNN 120

Query: 121 NGNLNTCCSVMLKRPFLFL 129
           NGNLNTCCSVMLKRPFLFL
Sbjct: 121 NGNLNTCCSVMLKRPFLFL 139

[Close]

BLAST of Clc02G08640.1 vs. ExPASy TrEMBL
Match: A0A0A0LTB0 (B box-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G423560 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 8.1e-59
Identity = 113/133 (84.96%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 1   MCRGVEEGNHGHG----GCQRSPVAEKGGVSVADAVMCELCNSKASLYCQADDAYLCRKC 60
           MCRGVEEGNHGH     GC++SPV +KG VS A  VMCELCNSKASLYCQADDAYLCRKC
Sbjct: 1   MCRGVEEGNHGHAHGRDGCRQSPVIQKGVVSAAGVVMCELCNSKASLYCQADDAYLCRKC 60

Query: 61  DKWVHGANFLALRHIRCILCNVCQNLTQKYLMGTSTEVLLPTIITCTKANDC-NNGNLNT 120
           DKWVHGANFLALRHIRCILCNVCQNLTQKYLMGTSTEVLLPTII C +ANDC NNGN N 
Sbjct: 61  DKWVHGANFLALRHIRCILCNVCQNLTQKYLMGTSTEVLLPTIIACAEANDCNNNGNRNP 120

Query: 121 CCSVMLKRPFLFL 129
           CCSVM KRPFLFL
Sbjct: 121 CCSVMFKRPFLFL 133

[Close]

BLAST of Clc02G08640.1 vs. ExPASy TrEMBL
Match: A0A6J1JGF8 (B-box domain protein 30-like OS=Cucurbita maxima OX=3661 GN=LOC111484160 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.3e-48
Identity = 102/131 (77.86%), Postives = 108/131 (82.44%), Query Frame = 0


Query: 1   MCRGVEEGNHGHGGCQRSPVAEKGGVSVADA-VMCELCNSKASLYCQADDAYLCRKCDKW 60
           MCRGV E    HGGC+    AEKGG S   A VMCELCNS+ASLYCQADDAYLCRKCDKW
Sbjct: 34  MCRGVVE-QRSHGGCRDFSAAEKGGDSAEGAVVMCELCNSRASLYCQADDAYLCRKCDKW 93

Query: 61  VHGANFLALRHIRCILCNVCQNLTQKYLMGTSTEVLLPTIITCTK-ANDCN-NGNLNTCC 120
           VHGANFLALRHIRCILC+VCQNLT KYLMGTST+VLLPTI+TC +  NDCN N NLNTCC
Sbjct: 94  VHGANFLALRHIRCILCSVCQNLTHKYLMGTSTQVLLPTIVTCDQPPNDCNGNRNLNTCC 153

Query: 121 SVMLKRPFLFL 129
           SV LK P LFL
Sbjct: 154 SVRLKTPVLFL 163

[Close]

BLAST of Clc02G08640.1 vs. ExPASy TrEMBL
Match: A0A2C9UPR0 (B box-type domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_13G073800 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.7e-38
Identity = 81/131 (61.83%), Postives = 96/131 (73.28%), Query Frame = 0


Query: 1   MCRGVEEGNHGHGG-CQRSPVAEKG-GVSVADAVMCELCNSKASLYCQADDAYLCRKCDK 60
           MCRGVEE +H HG  C++    E G G   +  V CELC S+ASLYCQAD+A+LCRKCDK
Sbjct: 1   MCRGVEERSHSHGRFCRKQEEEEAGSGNETSSLVCCELCGSQASLYCQADNAFLCRKCDK 60

Query: 61  WVHGANFLALRHIRCILCNVCQNLTQKYLMGTSTEVLLPTIITC-TKANDCNNGNLNTCC 120
           WVHGANFLA RHIRC LCN CQNLTQ+YL+G STE++LPTI++   +   CN  N +  C
Sbjct: 61  WVHGANFLAFRHIRCFLCNTCQNLTQRYLIGASTEIVLPTIVSLRERRQGCNTNNDDKLC 120

Query: 121 SVMLKRPFLFL 129
           S  LK PFLFL
Sbjct: 121 STSLKMPFLFL 131

[Close]

BLAST of Clc02G08640.1 vs. TAIR 10
Match: AT4G15248.1 (B-box type zinc finger family protein )

HSP 1 Score: 102.4 bits (254), Expect = 2.7e-22
Identity = 56/132 (42.42%), Postives = 78/132 (59.09%), Query Frame = 0


Query: 1   MCRGV---EEGNHGHGGCQR-SPVAEKGGVSVADAVMCELCNSKASLYCQADDAYLCRKC 60
           MCRG    EE    +GGCQR    + K  VS      CELC   A++YC+AD A+LCRKC
Sbjct: 1   MCRGFEKEEERRSDNGGCQRLCTESHKAPVS------CELCGENATVYCEADAAFLCRKC 60

Query: 61  DKWVHGANFLALRHIRCILCNVCQNLTQKYLMGTSTEVLLPTIITCTKANDCNNGNLNTC 120
           D+WVH ANFLA RH+R ++C  C+ LT++ L+G +  V+LP I    +  + ++ +    
Sbjct: 61  DRWVHSANFLARRHLRRVICTTCRKLTRRCLVGDNFNVVLPEIRMIARIEEHSSDH---- 117

Query: 121 CSVMLKRPFLFL 129
                K PF+FL
Sbjct: 121 -----KIPFVFL 117

[Close]

BLAST of Clc02G08640.1 vs. TAIR 10
Match: AT3G21890.1 (B-box type zinc finger family protein )

HSP 1 Score: 99.0 bits (245), Expect = 3.0e-21
Identity = 51/104 (49.04%), Postives = 67/104 (64.42%), Query Frame = 0


Query: 1   MCRGV--EEGNHGHGGCQRSPVAEKGGVSVADAVMCELCNSKASLYCQADDAYLCRKCDK 60
           MCRG+  EE     GG  RS          +  V CELC+  AS++C+AD A+LCRKCD+
Sbjct: 1   MCRGLNNEESRRSDGGGCRSLCTRP-----SVPVRCELCDGDASVFCEADSAFLCRKCDR 60

Query: 61  WVHGANFLALRHIRCILCNVCQNLTQKYLMGT-STEVLLPTIIT 102
           WVHGANFLA RH+R +LC  CQ LT++ L+G     V+LP++ T
Sbjct: 61  WVHGANFLAWRHVRRVLCTSCQKLTRRCLVGDHDFHVVLPSVTT 99

[Close]

BLAST of Clc02G08640.1 vs. TAIR 10
Match: AT3G21150.1 (B-box 32 )

HSP 1 Score: 73.9 bits (180), Expect = 1.0e-13
Identity = 33/85 (38.82%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 34  CELCNSKASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCNVCQNLTQKYLMGTSTE 93
           CELC ++A L+C AD A+LCR CD   H +NFL  RH R ++C  C++LTQ ++ G    
Sbjct: 5   CELCGAEADLHCAADSAFLCRSCDAKFHASNFLFARHFRRVICPNCKSLTQNFVSG---- 64

Query: 94  VLLPTIITCTKANDCNNGNLNTCCS 119
              P +    +   C+  + ++CCS
Sbjct: 65  ---PLLPWPPRTTCCSESSSSSCCS 82

[Close]

BLAST of Clc02G08640.1 vs. TAIR 10
Match: AT4G27310.1 (B-box type zinc finger family protein )

HSP 1 Score: 72.8 bits (177), Expect = 2.3e-13
Identity = 34/85 (40.00%), Postives = 44/85 (51.76%), Query Frame = 0


Query: 34  CELCNSKASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCNVCQNLTQKYLMGTSTE 93
           C+LCN  A +YC++D A LC  CD  VHGANFL  +H RC+LC+ CQ+LT     G    
Sbjct: 5   CDLCNGVARMYCESDQASLCWDCDGKVHGANFLVAKHTRCLLCSACQSLTPWKATGLRLG 64

Query: 94  VLLPTIITCTKANDCNNGNLNTCCS 119
                  +C    +   G  N   S
Sbjct: 65  PTFSVCESCVALKNAGGGRGNRVLS 89

[Close]

BLAST of Clc02G08640.1 vs. TAIR 10
Match: AT5G54470.1 (B-box type zinc finger family protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-12
Identity = 33/80 (41.25%), Postives = 45/80 (56.25%), Query Frame = 0


Query: 34  CELCNSKASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCNVCQNLTQKYLMGTSTE 93
           CELC   A +YC++D A LC  CD  VHGANFL  +H+RC+LC+ CQ+ T     G +  
Sbjct: 6   CELCCGVARMYCESDQASLCWDCDGKVHGANFLVAKHMRCLLCSACQSHTPWKASGLNLG 65

Query: 94  VLLPTIITCTKANDCNNGNL 114
             +    +C      NN +L
Sbjct: 66  PTVSICESCLARKKNNNSSL 85

The following BLAST results are available for this feature:

BLAST of Clc02G08640.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042428.1	1.0e-60	84.17	Zinc finger protein CONSTANS-LIKE 14 [Cucumis melo var. makuwa]	[more]
TYK13446.1	1.0e-60	84.17	Zinc finger protein CONSTANS-LIKE 14 [Cucumis melo var. makuwa]	[more]
KGN63276.1	1.7e-58	84.96	hypothetical protein Csa_022167 [Cucumis sativus]	[more]
XP_022986418.1	2.7e-48	77.86	B-box domain protein 30-like [Cucurbita maxima]	[more]
KAG6570870.1	4.5e-48	77.10	B-box domain protein 31, partial [Cucurbita argyrosperma subsp. sororia] >KAG701...	[more]

BLAST of Clc02G08640.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1G3I2	3.8e-21	42.42	B-box domain protein 30 OS=Arabidopsis thaliana OX=3702 GN=MIP1A PE=1 SV=1	[more]
Q9LRM4	4.2e-20	49.04	B-box domain protein 31 OS=Arabidopsis thaliana OX=3702 GN=MIP1B PE=2 SV=1	[more]
Q9LJB7	1.4e-12	38.82	B-box zinc finger protein 32 OS=Arabidopsis thaliana OX=3702 GN=BBX32 PE=1 SV=1	[more]
O82256	1.8e-07	34.04	Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana OX=3702 GN=COL13 PE...	[more]
Q9C9F4	4.0e-07	50.00	Putative zinc finger protein At1g68190 OS=Arabidopsis thaliana OX=3702 GN=At1g68...	[more]

BLAST of Clc02G08640.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CSP7	5.1e-61	84.17	Zinc finger protein CONSTANS-LIKE 14 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7TI11	5.1e-61	84.17	Zinc finger protein CONSTANS-LIKE 14 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0LTB0	8.1e-59	84.96	B box-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G423560 ...	[more]
A0A6J1JGF8	1.3e-48	77.86	B-box domain protein 30-like OS=Cucurbita maxima OX=3661 GN=LOC111484160 PE=4 SV...	[more]
A0A2C9UPR0	2.7e-38	61.83	B box-type domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_13G07...	[more]

BLAST of Clc02G08640.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15248.1	2.7e-22	42.42	B-box type zinc finger family protein	[more]
AT3G21890.1	3.0e-21	49.04	B-box type zinc finger family protein	[more]
AT3G21150.1	1.0e-13	38.82	B-box 32	[more]
AT4G27310.1	2.3e-13	40.00	B-box type zinc finger family protein	[more]
AT5G54470.1	1.1e-12	41.25	B-box type zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000315	B-box-type zinc finger	SMART	SM00336	bboxneu5	coord: 29..75 e-value: 3.2E-8 score: 43.3
IPR000315	B-box-type zinc finger	PFAM	PF00643	zf-B_box	coord: 32..61 e-value: 1.3E-5 score: 25.2
IPR000315	B-box-type zinc finger	PROSITE	PS50119	ZF_BBOX	coord: 29..75 score: 9.058046
None	No IPR available	PANTHER	PTHR31717	ZINC FINGER PROTEIN CONSTANS-LIKE 10	coord: 17..108
None	No IPR available	PANTHER	PTHR31717:SF100	B-BOX ZINC FINGER PROTEIN 29	coord: 17..108
None	No IPR available	CDD	cd19821	Bbox1_BBX-like	coord: 34..73 e-value: 7.07049E-13 score: 56.9223

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc02G08640	Clc02G08640	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc02G08640.1-exon	Clc02G08640.1-exon-ClcChr02:10357591..10357977	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc02G08640.1-cds	Clc02G08640.1-cds-ClcChr02:10357591..10357977	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc02G08640.1	Clc02G08640.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding