Clc01G21400.2 (mRNA) Watermelon (cordophanus) v2

Overview
NameClc01G21400.2
TypemRNA
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr01: 32994065 .. 32994347 (-)
Sequence length207
RNA-Seq ExpressionClc01G21400.2
SyntenyClc01G21400.2
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTATCTTCATTTTGTTTTCTTTTACACTAACAGTACGATTGTCATTAAATTTATTTGCAGCAGAAGAAGCAGCAGCAGCAACTACTTTGAACTGTGAAAGTAGAAGATAAAAACAGTTAATATTATTATTATAGTGGAGAGATTTGATTGATGATATTATGATTTGTAAGGGAAGGGGAAATTGGTGAAAGAAGAAATGAAGATGGGAATGTGGGGTTGGGAAGGGGACAAGATCCATCAGGGAATTTGGTTTTAGGAGCATTAAGCCAACCTCCATAG

mRNA sequence

ATGAGTATCTTCATTTTGTTTTCTTTTACACTAACAGTACGATTGTCATTAAATTTATTTGCAGCAGAAGAAGCAGCAGCAGCAACTACTTTGAACTGTGAAAGGGAAATTGGTGAAAGAAGAAATGAAGATGGGAATGTGGGGTTGGGAAGGGGACAAGATCCATCAGGGAATTTGGTTTTAGGAGCATTAAGCCAACCTCCATAG

Coding sequence (CDS)

ATGAGTATCTTCATTTTGTTTTCTTTTACACTAACAGTACGATTGTCATTAAATTTATTTGCAGCAGAAGAAGCAGCAGCAGCAACTACTTTGAACTGTGAAAGGGAAATTGGTGAAAGAAGAAATGAAGATGGGAATGTGGGGTTGGGAAGGGGACAAGATCCATCAGGGAATTTGGTTTTAGGAGCATTAAGCCAACCTCCATAG

Protein sequence

MSIFILFSFTLTVRLSLNLFAAEEAAAATTLNCEREIGERRNEDGNVGLGRGQDPSGNLVLGALSQPP
Homology
The following BLAST results are available for this feature:
BLAST of Clc01G21400.2 vs.
Match NameE-valueIdentityDescription
BLAST of Clc01G21400.2 vs.
Match NameE-valueIdentityDescription
BLAST of Clc01G21400.2 vs.
Match NameE-valueIdentityDescription
BLAST of Clc01G21400.2 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..68

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Clc01G21400Clc01G21400gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Clc01G21400.2-exonClc01G21400.2-exon-ClcChr01:32994065..32994168exon
Clc01G21400.2-exonClc01G21400.2-exon-ClcChr01:32994245..32994347exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Clc01G21400.2-cdsClc01G21400.2-cds-ClcChr01:32994065..32994168CDS
Clc01G21400.2-cdsClc01G21400.2-cds-ClcChr01:32994245..32994347CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Clc01G21400.2Clc01G21400.2-proteinpolypeptide