Clc01G14220.1 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc01G14220.1
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Protein of unknown function (DUF1118)
Location	ClcChr01: 27055507 .. 27057200 (+)
Sequence length	627
RNA-Seq Expression	Clc01G14220.1
Synteny	Clc01G14220.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTCACTTCACAATCTCCATCTTCCTCCACTGCCACTGCCACTGCCACTGCTGCTCTCTCTCACCTTCCCAGCCGCTTCTCAATTACCAGATTCCGCCACGTCTCTAACCATGTTCGACCCTCCAGATCCAATCCACTCACCATCGTCGCCATGGCTCCTCAGAAGAAGGTACTGCAACTGCTGCTCTCTTTCTTCTATTATAACGGATCAACAATTTCTGTTTCCATCGCGTTCTTCCGGAGCTAAATGGAAAATTGATGGGTTCAGGTGAACAAATACGACGACGCGTGGGAGAAGAAATGGTTTGGAGCTGGAATCTTCTACGAGAGCGCGGAGGATGTGGAAGTCGATGTGTTCAAGAAGCTTGAGACGAAGAAAGTGCTTAGCAATGTCGAAAAAGCAGGGCTGTTATCGAAGGCGGAGGAATTAGGGTTTACGCTTTCTTCGATTGAGAAATTGGGGGTTTTCTCAAAAGCTGAGGAGTTGGGGCTTCTTAGCTTGCTTGAGAAGGTTGCCAGCTCTTCTCCCTCCGCTTTGGCTTCCCTTGCCCTTCCGATTCTCGTTGCGGCGCTGGCGGCGATTGTTCTTATTCCGGATGACTCGGTGGCGCTTGTAGCGTTGCAGGCGGTGGTCGGCGGCGGACTGGCGCTTGGGGCCGCCGGATTGTTCGTTGGATCGGTGGTGCTGGGTGGGTTGCAGGAAGCTGATTGAATAAGGTTTAGGTAATAAATTGAATAGTACTCTTGAAATAGTTTTAATTTCATTTGGGTAATTATGAAACCATAAACATAGTGTTTCTAAAGTGAGTTTTAAAAATGTGGATTTGTAAATAGCTGATTTTGGTATCCTATTTTTACTATTTTAAAAACTATTCAAAGAAACTTCAAATTTTGACCAATTTTAACTTCAAACTTTTTAATTTCAATGGGGGATTCCTATATTCATCTAAAATTTTAATTTCATGGGGATGGAAATCGAAATTTCGTACTGTCGATTAGCCCCATAGCGAGAATTAAATTACAAATTGGTTCTAATAGTTTGGAAATAGTTAGATTTTAATCCTTATAATTTGATAAAACCTCATAACTAGTTTTCTATGATTTGATAAAATGGTAGACTATTTTCGAATTTTTTATCGAATCATAAAGAACAAATTCAAATTCTAACTTTTTTAAAATCATAGAACCTAAATTTGGTAATTGATTCGCAATCAACGGATTCATGGGACAAATCAAGAGAAAGACTCTTTTTAATTGGCATTCCCGATCTCTATTGAAAAAGAAAACTAGTGCAAATTCTGATTATGGTTTATTTTCCACATGAAATTTTCATTTAAAAACAAAATTATTCAACATGCGATGGAGAGATAAGGGATAAAAAAAAAATTCTTTTTTTAATTCAATCATATTAAAATAGAATGCTTCTAATCATTTTGTTAAAGTTATTGTTAGAGTTGGAACAAACAAAGTCTCACATTAGCTATATGATAAAAAATTGAGAGACGGATGACATCTCCATTAGCATAAGATTATTTAAATGAACCAAAAACGAATATGTTGAAAGTAAACAAAATGAAGCATGATTTGAATGAAAATAACAAATATATATATTGAAATAGTTTAAGAAGATTCAAAGTTTGAAACTAATTGTAACCCTAAACAGATGTCTTGAATGGGAGGAGAGGATGA

mRNA sequence

ATGGCGGTCACTTCACAATCTCCATCTTCCTCCACTGCCACTGCCACTGCCACTGCTGCTCTCTCTCACCTTCCCAGCCGCTTCTCAATTACCAGATTCCGCCACGTCTCTAACCATGTTCGACCCTCCAGATCCAATCCACTCACCATCGTCGCCATGGCTCCTCAGAAGAAGGTGAACAAATACGACGACGCGTGGGAGAAGAAATGGTTTGGAGCTGGAATCTTCTACGAGAGCGCGGAGGATGTGGAAGTCGATGTGTTCAAGAAGCTTGAGACGAAGAAAGTGCTTAGCAATGTCGAAAAAGCAGGGCTGTTATCGAAGGCGGAGGAATTAGGGTTTACGCTTTCTTCGATTGAGAAATTGGGGGTTTTCTCAAAAGCTGAGGAGTTGGGGCTTCTTAGCTTGCTTGAGAAGGTTGCCAGCTCTTCTCCCTCCGCTTTGGCTTCCCTTGCCCTTCCGATTCTCGTTGCGGCGCTGGCGGCGATTGTTCTTATTCCGGATGACTCGGTGGCGCTTGTAGCGTTGCAGGCGGTGGTCGGCGGCGGACTGGCGCTTGGGGCCGCCGGATTGTTCGTTGGATCGGTGGTGCTGGGTTTAGATGTCTTGAATGGGAGGAGAGGATGA

Coding sequence (CDS)

ATGGCGGTCACTTCACAATCTCCATCTTCCTCCACTGCCACTGCCACTGCCACTGCTGCTCTCTCTCACCTTCCCAGCCGCTTCTCAATTACCAGATTCCGCCACGTCTCTAACCATGTTCGACCCTCCAGATCCAATCCACTCACCATCGTCGCCATGGCTCCTCAGAAGAAGGTGAACAAATACGACGACGCGTGGGAGAAGAAATGGTTTGGAGCTGGAATCTTCTACGAGAGCGCGGAGGATGTGGAAGTCGATGTGTTCAAGAAGCTTGAGACGAAGAAAGTGCTTAGCAATGTCGAAAAAGCAGGGCTGTTATCGAAGGCGGAGGAATTAGGGTTTACGCTTTCTTCGATTGAGAAATTGGGGGTTTTCTCAAAAGCTGAGGAGTTGGGGCTTCTTAGCTTGCTTGAGAAGGTTGCCAGCTCTTCTCCCTCCGCTTTGGCTTCCCTTGCCCTTCCGATTCTCGTTGCGGCGCTGGCGGCGATTGTTCTTATTCCGGATGACTCGGTGGCGCTTGTAGCGTTGCAGGCGGTGGTCGGCGGCGGACTGGCGCTTGGGGCCGCCGGATTGTTCGTTGGATCGGTGGTGCTGGGTTTAGATGTCTTGAATGGGAGGAGAGGATGA

Protein sequence

MAVTSQSPSSSTATATATAALSHLPSRFSITRFRHVSNHVRPSRSNPLTIVAMAPQKKVNKYDDAWEKKWFGAGIFYESAEDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGFTLSSIEKLGVFSKAEELGLLSLLEKVASSSPSALASLALPILVAALAAIVLIPDDSVALVALQAVVGGGLALGAAGLFVGSVVLGLDVLNGRRG

Homology

[Close]

BLAST of Clc01G14220.1 vs. NCBI nr
Match: XP_038895665.1 (uncharacterized protein LOC120083851 [Benincasa hispida])

HSP 1 Score: 307.0 bits (785), Expect = 1.2e-79
Identity = 182/202 (90.10%), Postives = 184/202 (91.09%), Query Frame = 0


Query: 1   MAVTSQSPSSSTATATATAALSHLPSRFSITRFRHVSNHVRP---SRSNPLTIVAMAPQK 60
           MAVTSQSPSSS     ATAA SHL +RFSI RFRHVSNH RP   S  NPLTIVAMAPQK
Sbjct: 1   MAVTSQSPSSS----AATAAPSHLTNRFSIPRFRHVSNHSRPFPSSTYNPLTIVAMAPQK 60

Query: 61  KVNKYDDAWEKKWFGAGIFYESAEDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGFTLS 120
           KVNKYDDAWEKKWFGAGIFYESAEDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGFTLS
Sbjct: 61  KVNKYDDAWEKKWFGAGIFYESAEDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGFTLS 120

Query: 121 SIEKLGVFSKAEELGLLSLLEKVASSSPSALASLALPILVAALAAIVLIPDDSVALVALQ 180
           SIEKLGVFSKAEELGLLSLLEK+ SSSPSALASLALPILV ALAAIVLIPDDSVALV LQ
Sbjct: 121 SIEKLGVFSKAEELGLLSLLEKIVSSSPSALASLALPILVTALAAIVLIPDDSVALVVLQ 180

Query: 181 AVVGGGLALGAAGLFVGSVVLG 200
           AVVGGGLALGAAGL VGSVVLG
Sbjct: 181 AVVGGGLALGAAGLLVGSVVLG 198

[Close]

BLAST of Clc01G14220.1 vs. NCBI nr
Match: XP_004152441.1 (uncharacterized protein LOC101214681 [Cucumis sativus] >KGN64256.1 hypothetical protein Csa_013525 [Cucumis sativus])

HSP 1 Score: 303.5 bits (776), Expect = 1.4e-78
Identity = 180/204 (88.24%), Postives = 185/204 (90.69%), Query Frame = 0


Query: 1   MAVTSQSPSSSTATATATAALSHLPSRFSITRFRHVSNHVR-----PSRSNPLTIVAMAP 60
           MAVTSQSPSSS      TA LSHL +RFSI+RF H+SN+ R      SRSNPLTI AMAP
Sbjct: 1   MAVTSQSPSSS------TAPLSHLHNRFSISRFHHISNYARRRPFSSSRSNPLTIFAMAP 60

Query: 61  QKKVNKYDDAWEKKWFGAGIFYESAEDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGFT 120
           QKKVNKYDDAWEKKWFGAGIFYESAEDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGFT
Sbjct: 61  QKKVNKYDDAWEKKWFGAGIFYESAEDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGFT 120

Query: 121 LSSIEKLGVFSKAEELGLLSLLEKVASSSPSALASLALPILVAALAAIVLIPDDSVALVA 180
           LSSIEKLGVFSKAEELGLLSLLEKVASSSPSALASLALPILVAAL AIV+IPDDSVALVA
Sbjct: 121 LSSIEKLGVFSKAEELGLLSLLEKVASSSPSALASLALPILVAALVAIVVIPDDSVALVA 180

Query: 181 LQAVVGGGLALGAAGLFVGSVVLG 200
           LQAVVGGGLALGAAGL VGSVVLG
Sbjct: 181 LQAVVGGGLALGAAGLLVGSVVLG 198

[Close]

BLAST of Clc01G14220.1 vs. NCBI nr
Match: XP_008437595.1 (PREDICTED: uncharacterized protein LOC103482961 [Cucumis melo] >TYJ99105.1 DUF1118 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 298.9 bits (764), Expect = 3.4e-77
Identity = 176/201 (87.56%), Postives = 182/201 (90.55%), Query Frame = 0


Query: 3   VTSQSPSSSTATATATAALSHLPSRFSITRFRHVSNHVR----PSRSNPLTIVAMAPQKK 62
           +TS SPSSS      TA+LSH P+RFSI+R  H+SNH R     SRSNPLTIVAMAPQKK
Sbjct: 4   ITSHSPSSS------TASLSHPPNRFSISRIHHISNHPRRPFPSSRSNPLTIVAMAPQKK 63

Query: 63  VNKYDDAWEKKWFGAGIFYESAEDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGFTLSS 122
           VNKYDDAWEKKWFGAGIFYESAEDVEVDVFKKLETKKVLSNVEKAGLLSKAEELG TLSS
Sbjct: 64  VNKYDDAWEKKWFGAGIFYESAEDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGVTLSS 123

Query: 123 IEKLGVFSKAEELGLLSLLEKVASSSPSALASLALPILVAALAAIVLIPDDSVALVALQA 182
           IEKLGVFSKAEELGLLSLLEKVASSSPSALASLALPILVAAL AIV+IPDDSVALVALQA
Sbjct: 124 IEKLGVFSKAEELGLLSLLEKVASSSPSALASLALPILVAALVAIVVIPDDSVALVALQA 183

Query: 183 VVGGGLALGAAGLFVGSVVLG 200
           VVGGGLALGAAGL VGSVVLG
Sbjct: 184 VVGGGLALGAAGLLVGSVVLG 198

[Close]

BLAST of Clc01G14220.1 vs. NCBI nr
Match: XP_022137512.1 (uncharacterized protein LOC111008941 [Momordica charantia])

HSP 1 Score: 293.9 bits (751), Expect = 1.1e-75
Identity = 170/193 (88.08%), Postives = 178/193 (92.23%), Query Frame = 0


Query: 9   SSSTATATATAALSHLPSRFSITRFRHVSNHVR--PSRSNPLTIVAMAPQKKVNKYDDAW 68
           S S+A A ATAA SHLP++F  ++FRH  NH R  PSRSN LTIVAMAP+KKVNKYDD W
Sbjct: 5   SPSSAAAAATAAPSHLPNKFFSSKFRHAFNHARALPSRSNSLTIVAMAPKKKVNKYDDGW 64

Query: 69  EKKWFGAGIFYESAEDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGFTLSSIEKLGVFS 128
           +KKWFGAGIFYES+EDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGFTLSSIEKLGVFS
Sbjct: 65  QKKWFGAGIFYESSEDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGFTLSSIEKLGVFS 124

Query: 129 KAEELGLLSLLEKVASSSPSALASLALPILVAALAAIVLIPDDSVALVALQAVVGGGLAL 188
           KAEELGLLSLLEKVASSSPSALASLALPILVAALAAIVLIPDDS ALVALQAVVGGGLAL
Sbjct: 125 KAEELGLLSLLEKVASSSPSALASLALPILVAALAAIVLIPDDSAALVALQAVVGGGLAL 184

Query: 189 GAAGLFVGSVVLG 200
           GAAGL VGSVVLG
Sbjct: 185 GAAGLLVGSVVLG 197

[Close]

BLAST of Clc01G14220.1 vs. NCBI nr
Match: XP_023000865.1 (uncharacterized protein LOC111495182 [Cucurbita maxima] >XP_023000866.1 uncharacterized protein LOC111495182 [Cucurbita maxima])

HSP 1 Score: 292.0 bits (746), Expect = 4.2e-75
Identity = 173/202 (85.64%), Postives = 179/202 (88.61%), Query Frame = 0


Query: 1   MAVTSQSPSSSTATATATAALSHLPSRFSITRFRHVSNHVRP---SRSNPLTIVAMAPQK 60
           MAVT+QSPSSS       AA S LP+RFSI+RFRH SNH RP   SRSNPL I+AMA QK
Sbjct: 1   MAVTAQSPSSS-------AAPSLLPNRFSISRFRHASNHARPRPSSRSNPLRILAMASQK 60

Query: 61  KVNKYDDAWEKKWFGAGIFYESAEDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGFTLS 120
           KVNKYDD WEKKWFGAGIFYES+EDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGFTLS
Sbjct: 61  KVNKYDDGWEKKWFGAGIFYESSEDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGFTLS 120

Query: 121 SIEKLGVFSKAEELGLLSLLEKVASSSPSALASLALPILVAALAAIVLIPDDSVALVALQ 180
           SIEKLGVFSKAEE GLLSLLEKVAS+SPS LASLALPILVAALAAIVLIPDDS  LVALQ
Sbjct: 121 SIEKLGVFSKAEEFGLLSLLEKVASASPSTLASLALPILVAALAAIVLIPDDSAPLVALQ 180

Query: 181 AVVGGGLALGAAGLFVGSVVLG 200
           AVV GGL LGAAGLFVGSVVLG
Sbjct: 181 AVVAGGLTLGAAGLFVGSVVLG 195

[Close]

BLAST of Clc01G14220.1 vs. ExPASy TrEMBL
Match: A0A0A0LW40 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045540 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 6.7e-79
Identity = 180/204 (88.24%), Postives = 185/204 (90.69%), Query Frame = 0


Query: 1   MAVTSQSPSSSTATATATAALSHLPSRFSITRFRHVSNHVR-----PSRSNPLTIVAMAP 60
           MAVTSQSPSSS      TA LSHL +RFSI+RF H+SN+ R      SRSNPLTI AMAP
Sbjct: 1   MAVTSQSPSSS------TAPLSHLHNRFSISRFHHISNYARRRPFSSSRSNPLTIFAMAP 60

Query: 61  QKKVNKYDDAWEKKWFGAGIFYESAEDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGFT 120
           QKKVNKYDDAWEKKWFGAGIFYESAEDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGFT
Sbjct: 61  QKKVNKYDDAWEKKWFGAGIFYESAEDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGFT 120

Query: 121 LSSIEKLGVFSKAEELGLLSLLEKVASSSPSALASLALPILVAALAAIVLIPDDSVALVA 180
           LSSIEKLGVFSKAEELGLLSLLEKVASSSPSALASLALPILVAAL AIV+IPDDSVALVA
Sbjct: 121 LSSIEKLGVFSKAEELGLLSLLEKVASSSPSALASLALPILVAALVAIVVIPDDSVALVA 180

Query: 181 LQAVVGGGLALGAAGLFVGSVVLG 200
           LQAVVGGGLALGAAGL VGSVVLG
Sbjct: 181 LQAVVGGGLALGAAGLLVGSVVLG 198

[Close]

BLAST of Clc01G14220.1 vs. ExPASy TrEMBL
Match: A0A5D3BL78 (DUF1118 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003100 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.6e-77
Identity = 176/201 (87.56%), Postives = 182/201 (90.55%), Query Frame = 0


Query: 3   VTSQSPSSSTATATATAALSHLPSRFSITRFRHVSNHVR----PSRSNPLTIVAMAPQKK 62
           +TS SPSSS      TA+LSH P+RFSI+R  H+SNH R     SRSNPLTIVAMAPQKK
Sbjct: 4   ITSHSPSSS------TASLSHPPNRFSISRIHHISNHPRRPFPSSRSNPLTIVAMAPQKK 63

Query: 63  VNKYDDAWEKKWFGAGIFYESAEDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGFTLSS 122
           VNKYDDAWEKKWFGAGIFYESAEDVEVDVFKKLETKKVLSNVEKAGLLSKAEELG TLSS
Sbjct: 64  VNKYDDAWEKKWFGAGIFYESAEDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGVTLSS 123

Query: 123 IEKLGVFSKAEELGLLSLLEKVASSSPSALASLALPILVAALAAIVLIPDDSVALVALQA 182
           IEKLGVFSKAEELGLLSLLEKVASSSPSALASLALPILVAAL AIV+IPDDSVALVALQA
Sbjct: 124 IEKLGVFSKAEELGLLSLLEKVASSSPSALASLALPILVAALVAIVVIPDDSVALVALQA 183

Query: 183 VVGGGLALGAAGLFVGSVVLG 200
           VVGGGLALGAAGL VGSVVLG
Sbjct: 184 VVGGGLALGAAGLLVGSVVLG 198

[Close]

BLAST of Clc01G14220.1 vs. ExPASy TrEMBL
Match: A0A1S3AV09 (uncharacterized protein LOC103482961 OS=Cucumis melo OX=3656 GN=LOC103482961 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.6e-77
Identity = 176/201 (87.56%), Postives = 182/201 (90.55%), Query Frame = 0


Query: 3   VTSQSPSSSTATATATAALSHLPSRFSITRFRHVSNHVR----PSRSNPLTIVAMAPQKK 62
           +TS SPSSS      TA+LSH P+RFSI+R  H+SNH R     SRSNPLTIVAMAPQKK
Sbjct: 4   ITSHSPSSS------TASLSHPPNRFSISRIHHISNHPRRPFPSSRSNPLTIVAMAPQKK 63

Query: 63  VNKYDDAWEKKWFGAGIFYESAEDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGFTLSS 122
           VNKYDDAWEKKWFGAGIFYESAEDVEVDVFKKLETKKVLSNVEKAGLLSKAEELG TLSS
Sbjct: 64  VNKYDDAWEKKWFGAGIFYESAEDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGVTLSS 123

Query: 123 IEKLGVFSKAEELGLLSLLEKVASSSPSALASLALPILVAALAAIVLIPDDSVALVALQA 182
           IEKLGVFSKAEELGLLSLLEKVASSSPSALASLALPILVAAL AIV+IPDDSVALVALQA
Sbjct: 124 IEKLGVFSKAEELGLLSLLEKVASSSPSALASLALPILVAALVAIVVIPDDSVALVALQA 183

Query: 183 VVGGGLALGAAGLFVGSVVLG 200
           VVGGGLALGAAGL VGSVVLG
Sbjct: 184 VVGGGLALGAAGLLVGSVVLG 198

[Close]

BLAST of Clc01G14220.1 vs. ExPASy TrEMBL
Match: A0A6J1C8G3 (uncharacterized protein LOC111008941 OS=Momordica charantia OX=3673 GN=LOC111008941 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 5.3e-76
Identity = 170/193 (88.08%), Postives = 178/193 (92.23%), Query Frame = 0


Query: 9   SSSTATATATAALSHLPSRFSITRFRHVSNHVR--PSRSNPLTIVAMAPQKKVNKYDDAW 68
           S S+A A ATAA SHLP++F  ++FRH  NH R  PSRSN LTIVAMAP+KKVNKYDD W
Sbjct: 5   SPSSAAAAATAAPSHLPNKFFSSKFRHAFNHARALPSRSNSLTIVAMAPKKKVNKYDDGW 64

Query: 69  EKKWFGAGIFYESAEDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGFTLSSIEKLGVFS 128
           +KKWFGAGIFYES+EDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGFTLSSIEKLGVFS
Sbjct: 65  QKKWFGAGIFYESSEDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGFTLSSIEKLGVFS 124

Query: 129 KAEELGLLSLLEKVASSSPSALASLALPILVAALAAIVLIPDDSVALVALQAVVGGGLAL 188
           KAEELGLLSLLEKVASSSPSALASLALPILVAALAAIVLIPDDS ALVALQAVVGGGLAL
Sbjct: 125 KAEELGLLSLLEKVASSSPSALASLALPILVAALAAIVLIPDDSAALVALQAVVGGGLAL 184

Query: 189 GAAGLFVGSVVLG 200
           GAAGL VGSVVLG
Sbjct: 185 GAAGLLVGSVVLG 197

[Close]

BLAST of Clc01G14220.1 vs. ExPASy TrEMBL
Match: A0A6J1KJH4 (uncharacterized protein LOC111495182 OS=Cucurbita maxima OX=3661 GN=LOC111495182 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 2.0e-75
Identity = 173/202 (85.64%), Postives = 179/202 (88.61%), Query Frame = 0


Query: 1   MAVTSQSPSSSTATATATAALSHLPSRFSITRFRHVSNHVRP---SRSNPLTIVAMAPQK 60
           MAVT+QSPSSS       AA S LP+RFSI+RFRH SNH RP   SRSNPL I+AMA QK
Sbjct: 1   MAVTAQSPSSS-------AAPSLLPNRFSISRFRHASNHARPRPSSRSNPLRILAMASQK 60

Query: 61  KVNKYDDAWEKKWFGAGIFYESAEDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGFTLS 120
           KVNKYDD WEKKWFGAGIFYES+EDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGFTLS
Sbjct: 61  KVNKYDDGWEKKWFGAGIFYESSEDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGFTLS 120

Query: 121 SIEKLGVFSKAEELGLLSLLEKVASSSPSALASLALPILVAALAAIVLIPDDSVALVALQ 180
           SIEKLGVFSKAEE GLLSLLEKVAS+SPS LASLALPILVAALAAIVLIPDDS  LVALQ
Sbjct: 121 SIEKLGVFSKAEEFGLLSLLEKVASASPSTLASLALPILVAALAAIVLIPDDSAPLVALQ 180

Query: 181 AVVGGGLALGAAGLFVGSVVLG 200
           AVV GGL LGAAGLFVGSVVLG
Sbjct: 181 AVVAGGLTLGAAGLFVGSVVLG 195

[Close]

BLAST of Clc01G14220.1 vs. TAIR 10
Match: AT1G74730.1 (Protein of unknown function (DUF1118) )

HSP 1 Score: 181.0 bits (458), Expect = 9.6e-46
Identity = 119/199 (59.80%), Postives = 142/199 (71.36%), Query Frame = 0


Query: 1   MAVTSQSPSSSTATATATAALSH-LPSRFSITRFRHVSNHVRPSRSNPLTIVAMAPQKKV 60
           MAV   +P SS A    T  LS+ +  RF     R  S    P+     ++VAMAPQKKV
Sbjct: 1   MAVVG-APISSPAAQLQTQFLSNPILPRFR----RSFSTGKSPA---TFSVVAMAPQKKV 60

Query: 61  NKYDDAWEKKWFGAGIFYESAEDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGFTLSSI 120
           NKYD  W+K+W+GAG+F+E +E + VDVFKKLE +KVLSNVEK+GLLSKAE LG TLSS+
Sbjct: 61  NKYDAKWKKQWYGAGLFFEGSEQINVDVFKKLEKRKVLSNVEKSGLLSKAEGLGLTLSSL 120

Query: 121 EKLGVFSKAEELGLLSLLEKVASSSPSALASLALPILVAALAAIVLIPDDSVALVALQAV 180
           EKL VFSKAE+LGLLSLLE +A +SP+ LAS ALP L AA+ A+VLIPDDS  LV  QAV
Sbjct: 121 EKLKVFSKAEDLGLLSLLENLAGTSPAVLASAALPALTAAIVAVVLIPDDSTTLVVAQAV 180

Query: 181 VGGGLALGAAGLFVGSVVL 199
           + G LAL    L VGSVVL
Sbjct: 181 LAGALALTGVVLLVGSVVL 191

[Close]

BLAST of Clc01G14220.1 vs. TAIR 10
Match: AT5G08050.1 (Protein of unknown function (DUF1118) )

HSP 1 Score: 60.1 bits (144), Expect = 2.5e-09
Identity = 46/119 (38.66%), Postives = 71/119 (59.66%), Query Frame = 0


Query: 78  ESAEDVEVDVFKKLETKKVLSNVEKAGLLSKAEELGFTLSSIEKLGVFSKAEELGLLSLL 137
           +S    +V +  ++E  K+L+  EKAGLLS AE+ GF+LS+IE+LG+ +KAEE G+LS  
Sbjct: 33  KSTATPQVKLLTRVEQLKLLTKAEKAGLLSLAEKSGFSLSTIERLGLLTKAEEFGVLSAA 92

Query: 138 EKVASSSPSALASLALPILVAALAAIVLIPDDSV------ALVALQAVVGGGLALGAAG 191
                 +P  L +L+L +L+       ++P+D         LVAL +V+GG  A  A+G
Sbjct: 93  TN--PETPGTLFTLSLGLLLLGPVFAYVVPEDYTWEVVIQVLVALLSVLGGSAAFAASG 149

The following BLAST results are available for this feature:

BLAST of Clc01G14220.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895665.1	1.2e-79	90.10	uncharacterized protein LOC120083851 [Benincasa hispida]	[more]
XP_004152441.1	1.4e-78	88.24	uncharacterized protein LOC101214681 [Cucumis sativus] >KGN64256.1 hypothetical ...	[more]
XP_008437595.1	3.4e-77	87.56	PREDICTED: uncharacterized protein LOC103482961 [Cucumis melo] >TYJ99105.1 DUF11...	[more]
XP_022137512.1	1.1e-75	88.08	uncharacterized protein LOC111008941 [Momordica charantia]	[more]
XP_023000865.1	4.2e-75	85.64	uncharacterized protein LOC111495182 [Cucurbita maxima] >XP_023000866.1 uncharac...	[more]

BLAST of Clc01G14220.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc01G14220.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW40	6.7e-79	88.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045540 PE=4 SV=1	[more]
A0A5D3BL78	1.6e-77	87.56	DUF1118 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3AV09	1.6e-77	87.56	uncharacterized protein LOC103482961 OS=Cucumis melo OX=3656 GN=LOC103482961 PE=...	[more]
A0A6J1C8G3	5.3e-76	88.08	uncharacterized protein LOC111008941 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A6J1KJH4	2.0e-75	85.64	uncharacterized protein LOC111495182 OS=Cucurbita maxima OX=3661 GN=LOC111495182...	[more]

BLAST of Clc01G14220.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74730.1	9.6e-46	59.80	Protein of unknown function (DUF1118)	[more]
AT5G08050.1	2.5e-09	38.66	Protein of unknown function (DUF1118)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009500	Protein of unknown function DUF1118	PFAM	PF06549	DUF1118	coord: 90..198 e-value: 6.9E-44 score: 148.8

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc01G14220	Clc01G14220	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc01G14220.1-exon	Clc01G14220.1-exon-ClcChr01:27055507..27055680	exon
Clc01G14220.1-exon	Clc01G14220.1-exon-ClcChr01:27055780..27056200	exon
Clc01G14220.1-exon	Clc01G14220.1-exon-ClcChr01:27056229..27056234	exon
Clc01G14220.1-exon	Clc01G14220.1-exon-ClcChr01:27057175..27057200	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc01G14220.1-cds	Clc01G14220.1-cds-ClcChr01:27055507..27055680	CDS
Clc01G14220.1-cds	Clc01G14220.1-cds-ClcChr01:27055780..27056200	CDS
Clc01G14220.1-cds	Clc01G14220.1-cds-ClcChr01:27056229..27056234	CDS
Clc01G14220.1-cds	Clc01G14220.1-cds-ClcChr01:27057175..27057200	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc01G14220.1	Clc01G14220.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032774	RNA biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity