Clc01G02460.1 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc01G02460.1
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Meiotic recombination protein SPO11-2
Location	ClcChr01: 2172125 .. 2181343 (+)
Sequence length	1740
RNA-Seq Expression	Clc01G02460.1
Synteny	Clc01G02460.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTCTATGCTCGGTGACTGCCGTCATATGACCCTCACAACTTCAGCCAATTCCGATCCTCTGATCCTTCAACTCCTTCCGTAAGTTTACAATAATGGCGGAATCATCACACCCTTTCTTTCTCTTCTTCTATTTCATTTATCTAATTGTTGAAACCTTTCTTTCGTTTTCTTAATCTTTGGTGTTTTCCTCTATTTTTCATCATTGTTTGTTTAGTTTCTATGAATGTGAATTTGCTCGAGTTGTTCTTGAGTTGAGGTAGAGTGTGATGTGAACTGTGACTAAATTCTGATGAAATCGAATATCCTCGTGATCTTCTTTGCTCTGTCATTGTTGGAGATCTGCTAATTCTTGGTTGGGCGCATTGGCATTATTGATCTGTTTTCTGTTGTTGTCTTAATTGGAGGTCTCCAGAGCGTAATACTTGGAAATTCTTGAATTCTTGGAATTTTGGCATGAACGTTCTTAGTTTAGATAAGTTTGTAGATATAGATTCGCAATTGACGTGTTTGATCCTGAAACCTGAAAAAGGAAGATTATAATGAAGTTCATTAGTTTTCTATCTCTTCACTTTACCGTTTCTGTAATATTCTACGAATTTTCCATTTCTTTCTCATAGATGGAAGTGGAACTTTGCTGACCTCCTCCTGGAACCAATGAATCAGATGGTGTTTTTGTTTTAGTTTTTACTCTGTCTAGGTATTATAATCTTGTAAAGTCAGTCCAGTGAAAGAAATAATTCCGCTAACCCAGTTGCGAAGAATTCACTATAATGAGATACTAAGGGGACAAAATCTGAAGGAACAATAACACTGAGTTACTGATCTTCCAGATAATGATTCTATTTACTTCTCATATGTAGGTCATCTTCAAGTTTCTAATGATTCGGAAGCCCAGTGCTTTTAGCCTTTGAATGGAGCAGGCTGCAACCCATTTAAGTTGCCTCTTCCTTTGAGTAGATTTAGATTCATTGGACCAAAATGAAAAGTTGTATTACAATCAAATGTTCTTAAATTGCAGTGATAAAAATCTCTTCTATGCTGCAAATAGTGATGTTCTTGGTTTCTCTGATTTCTTGAGTGCTTTACTGTTTGCTTTCAGGGGTTATTCTTAAAAGTCCCAATCAAATACTTGATATAAAGTTTGAAGTTGTTAAAACAACACTCCTTTGAGCCACCTTAGTATTTTGCCTGTCTTTCTGCCTTGAACGGAAACATTTAGATAATGCAGAAGGATTGACAACTCTAAGAAACATTAGTGAAAACTGAGAAGCTGTTGATTGAAGAGATTCTAAGAGCATCTCAACTAAAGCTACCAGACGTTGTATCCCTTTTGGATATAAGACAGGTAGCAAATAGTTTCTTCATTGAAGCAAGATCAAAATAAATTCTCCTTGTAATTGTCTGTGCAAACTTGTGCTTGCTTCGGATTCATCACCCATCTTTGAATTGATCTAAAATCCGACACTTCACCGGTGCCATCCCTTGTTAATTGGACGGGATTGAGTGGGTGAACCATGTGAATGGAAGAGCTGTCTGGATCAACTAAAATGCTTTCATTAAAAGCTCAAACTGCACTATAATGCAAAATATTTTTTACTAGTGTAGTTGCTATCTGCAAGAAGTAAAGTAGAACAACAAGATGAATTAAGTATTTTCCAATGTAATGAACAAGTTGATGATGGAATTACTTTGCTAAGTTGGTTTTATTTTTATGTAGAAGATGATTCCTGCAATCTATCATCCATCCAACCCACAGTAGGACTCGTCCAGTTCCCCCACCAGATCAGGGTAAGCAAGAAAGGTTGTTTCCTCATTACTCTACTGATAAATAAACTCGTTGTTTAAAGCATTTTTTAGAAGAAAAAAGAATGTGCTTAAATTAGAAGGGTAATGACATGATATTTAGACTAACGTGCAACGTCCTCTTTTTGTTATTTGTCTAAGAGGCTACAAAAAGAACGCAAAAGCTTCAAAATTCTAGTAGAATGGAGCCAGCAGGTTTATTCCAATCCTCCATGAGATTTTTCTCCGATCAAGAACTCTGCTACGCCGATATCCTCACTCCTCAAGAGGTATGATATTTGCTTCATCATCCTCATCGCTGATCTCTGATCTGTGTTGCTTCATCTCTCAAGCATTGGTTTTGAATAGGTTGTGGCCAGAATTCAAGTAGCTGTCCTCAACTTCCTCAGAATTCTCAGCTCCCCCACTCCAGCCATCTCAAATCTTCCTCTGGTACGCTTCCTAACTAAGAAATGAAATGATATACGATACATGAACTTCAAATTCTGGATACACTTCTAAGACAGTATTATTGTTCCGATTGGACAGATTGATCGAAGATCGAGCAATAGCCGAGTGAATCAAGGAATTTTAATGGATGCTTCATGGATTTTCCTTTCGCACTCCTTTTGTACGAGGTCTTTGATGAGAGCCAATGCTGCCAAGGCCTTTGTTAGAGGTATTGTAAACGAAGCCTAATCTTCGATGGTCAAATTTTTTTGAACGATCAATTTGTTAGCCTCTGTTTTGGTCCTCCTTCGATTTTTCCCTATTCCGTGATGTAGTGTGGAAGCTGATGGAGATGTGCTCTCAGATTCTGATTCAGGATAAGCGAGTGACGCAGAGGGAGCTCTTCTACAAGCTACTCTGTAATTCACCTGCTTATTTTCCGACTCAGTTGCATGTCAATAGGACAGTTCAAGGTGATTTTGTTCGACGGAGATCTATTTCCTACTTTAGAACCTAAAACTATATTAAGTGTAATGATTAAAGTGGAGTAGTTTTATTGCAGATGTTGTAGCCTTACTTCGATGTAGCCGTTACAGCCTTGGCATTATGGCATCTAGCAGGGGACTTGTTGCCGGCCGTCTACTGTTGCAGGCACATTGCGCTGCCTTTCTTATTGATTTGGTTATTTACGTTACACATCACATATATACGCATGAAGTGATAATCGGCTTGTATTGAGCCCTATTCATCTACTTTCGCATGACAATTACATTGCGGATCCTTGAAATCAGGCTATTGATTTGATTATACATTGTTTCTTGGTTTCTGGCCAACATGCACTTTTAAGGTATCTTCTACTGAACCAAATTCTTGGATGTTATGGCCTTCTTGAACAATTTCAATTCCTATAGGAGCCAGAGCAAGAAGTTGTGGACTGTACTGCCTGTGGGTCTTCTGGATATGCCATTTCAGGTGACTTGGACTTGTTGCAGAAGTTGACTCTGAAGACTGATGCTCGGTACGTAATTGTAATTGAAAAGGTAATGGTTCTTAAATTATGACCTGCTCCTTAATTATACTTTTGCGAAAACAATAATTTAAAAAATGTAGTCGATCATAATTTGTGCAAATGCATCAAACATTATTGGTTATACAGCATGCAATATTCCAGCGGTTGGCAGAGGATCACGTTTTCAATCACATTCCCAGTATTCTTATCACAGCCAAAGGATATCCAGACATAGCCACAAGGTAAGTTTGTTCAACAGTTCTGGAAATCGCCGTTCTTTGTTGCTTTCTTGGCAGTCATAACTTAAACATATGAGCTGCCTTCTCAGGTACTTTCTTCACAGAATTAGCAAAACGTTTCCTCTTCTGCCAATATTCGGCCTTGTTGATTGGTATGATCCTCATTTACATCAACTCAACAAACTGTAGAAGTGTCTTCTCACTTTCAGCTTCTGGGTTCTAAAGGAACCCTGCGGGATTGGCTATATTATGCACCTTCAAGTATGGAAGTATAGGGATGGGCTTGGAGGCGTACAGATATGGTATGTCTCATTCCTTCGTTTGTTCGATCCATTTCTAATTGCAGACCATAGAACTGAAGAAGCTCTTTACATTACCAGCTTGCAATGTTAAATGGTTGGGAGTACGAGGCGACGATTTACAACTGATACCACAAGAATCTCTGGTTCCACTCAAGCCCCGGGACCTACAAATTGCCAAAAGCTTGATGTCCTCAGAAATATTACAGGTAACGTGCAATATTCTATACCTTTGGTGCTTTGGCATTTTAGGCTATCAAAATCCTAAGAATATATCGAACTTGAACCAACAGGAGAATTATCGACAAGAGCTGACCTTAATGGTTGAGAGAGGGCAAAAGGCTGAACTTGAAGCTTTATACCACAATGGATTTGATTATTTGGAGAAGTACATAGTCAAAAAGATTATTCAATTTAGTTACATCTGACATTATTTTCAACTTAGAGAAGTAGAGACAACTGCCTAGAGTGAATAAAGGGCTCTTTGCTAAAACACCATACCACCTGTTTCAAGTAAGCAAGTGCATCTTTCTTAGAAGAATAGTTGGCAAAAACTGAAGTGGCACGTTCATCAATCAAAGCTTTCAGCTGCTTCAGCTATAAAGATACCCCAGGTACCTATACAATAACAAGATCTCTAATGCCTTTAGAGAAACATATAAACAAGAAAATAATCTCTCTCCCAACAATTGGTAACATACTTGGCCAAGAATTGTTTTACACAATTTTCTAAACTTTGCCCATCAGATTTTACTGTTACCGTGCCAAAGAAGTTGTCATACTGCGGTGTCACCGGAGTCTTCATCGTCACTTTCATCAAAGGAAGTCTTTCTCCCTTGAAAGTAGCAGCCAGGTATTTTCTTTGGTCTACTCTTAATACCCAGTTCTTGCACTCCAGTTATGGATTTATCCTACGAACTTCCAATGGTAGAAAAATTATTAGGTACCATCTGTGAAAGAAAGGCATGATCCATGAACAGAAGACTTACTGCACCATTGAACTTCAATATTATTCACTGAAGTTTTACATTCCACTATATCTCCCAAACAATTTTTTATCTCAAACCAACCTAACCCAAAGATTTTAGTTGGGATACCCCTAAAGAAAACAAAATAAACATTTCTCACTTTCAAAATTACAAATTTCTTAGTAATTTGATGTAACACTCCTAGTTTGGAATGAAGACATGAATATGAAAGTATGATTAAGAAATGAATATGAAAGTATGATTAAGAAAGCTTAAAAGAATTGGAAGTTACTATTTATATCAACAAGGTGTACCTTCCTTTTTAGTGGCTCAATCACAAGAACTCGAACGTTAAGCGCGCTTAGCTTGGAGTACTCCTAGTGGGGTGACTTCCTAGGAATTTTTCGTATGATGCATGGAAAAAGCATGTTGAAAGGATTTGTGTTAATTTGTGGGGATAGTCCTCACTCTTGGAAATAGTTTAAGGCAAACAATGTCAGGCGTGTCGAATCCTGAGCTTGAGGTGTTACATTTGAACTTTCAAAAGTTTTTAATTCTATTAAAAACAAAATTAAAAGTTTAGAATTCAACATAAAACTCAAATGTATATCTAATAGACCAATTAATTAAAAAAAAAATCAAGATAAAGGACTAAATTTGTAATTTAACTAGAATATTTTTTTTGTTACCACCCAGAGAATGACATTTAAAAAATTTGACCAAACCAGTGATTAAATATTGTTGGTTGTTAGAGATGTCCATGGGTAGGGGCAAGGAAGCATTCCCCACCCTCGTCCTCACCCCCCTATTTTTTTTAACAATTACTTAATATTTAATTCTTTAAAAGAAACATTTCCATTACAAATTTCATTTAAATAAATTATTATCAATTTTCCTAATAAATAAAAACTCTCTCTATATATTATACACATTTACTCATGGGCACGGTGGGACTGGGGTCGGGGGACAGTGAATATTCCTCGTCCCCAACCTCGATTGGTAATGGGGAAAAAATCCCCATCTCTCCACCGTGTATTTGGAGATTCTCTGCCTCGTTTGGGATGAATGGGCCGACCCTATGAGTTAAGTTGACATAGATTGTGGTGATTGGGACTATTTGCACATATATATTTATTCATTTTGTAAGAATCAAGAAATCAAAAGGAATTAGATTCTTTTTGGATTGACTTAAGAAAAAAGTATTTTGCAAAAAAATAATTTTTATTTAAACTCTTTTGATTGAAATTGTTTTAAATGCACTTCAAAATTCATTTTTAGTGGTTATCAAACACTTTAGTTTTTTTCAAAATGACTTATTTTTTAAACACTTGAAAATGTATTCCAAATACACCCTTAATGAGATATATTAAGAAATTCATACCTTTCAAACTTAAATTAAGTAGTAAGAATAATTCTCATACTAAAACGAAAACAAAAATCTATTTTTTAGAGCGTTTATCATGTGAACTTTACCCCATTCGTTTGATTTCATTATTTATAATAGTTGGATTTTTCTTGGTTGATTTACGTTTCTAAATAAAATTGAGTGATCATATTTGCAGTACTCGAGTGAATTAGAAACTTAATCTAAAGAATGATACCCATAATGACTAGAAACTCAACATGAAATCTTGACTCCTTACAATTGCAATAAGCAATGTTCTCTAGAATCATATGGACCCATTTAAAATTTGTAAACTACTAAAAAAAAAAAAGAATAAAAATGAAACATTTAAAATAATAAAAACTAAACTCAAATTGAAGAAATTGAAACTAAAGAAACTAAATTGAAACTTGTAAAATTGTAAGGACGATACTGAAGTTAAGCCTACTATATAGAGGAAAATTATAATCTACCCTAATATTGTTATAATACTAATTTATTAATCATAGTAACTCTAAGAAAAAAAAAACAACATTAACATCCAAATAAAAAACAAAACTCTTACAAATTCCTCGAATAATAATAAATTTTTTAAAAAAAACTATGATTATTCTGCTGCAACTTTTTAACCAGTATTATTTATTTTTTTTAGCTAAATTCAGAAAATGATTTTTTTTTAAAATGACAAATTTTTTAATTTTTAAAACTTGGTTTAATTTTTTAAAATGCTTATAAAAAATAGACAACCAAACAAAATTAGTATTTAGACAAAAGAATGACTCTATGGGGGGAGAGTATAAAATTGTCATACAATGGGAATCCAGTAGTTGTAAATCCAATGGCGCTGTGATTCCTAATGACTCGCTTCTAGAAAAACCACTTCTCTGCTTCCTTCTTCTTCTTCTTCTTCTCCTTCTTCTTCTCTCCCTCTGTAGATTTCGAACAATCAACATATATTCAGCAGCATTCTCATGGGGTCTATGCTCGGTGACCTGCCGTCATATGACCCTCACAACTTCAGCCAACTCCGACCCTCCGATCCTTCGACTCCTTCTGTAAGTTCTCAATAATGGCGGAATCATCACACCTTTTCTTTCTCTTCTTCTAATTCATTCATCTAATTGTTGAAACCTTTCTTTCGTTTTCTTGATCTTCGCTGTTTCCCTCCATTTCTCATGATTGTTTGTTTCGTTTCTATTAATGGGAAATTTGCTCGACTTGAGGTAGGGTCTGAATTGTGATGGAATTCTTATGAAATTCAACCTTCTCCTGATCTTCTTTGCTCTTTCCTTGTTTGGGCTCTGCTAATTTTTGGTTGGGATCATTGGCATTATTGATCTGTTTTCTCTTTTTGTCTTAATTGGAGTTCCCCAGAGCGTAATACTTGGAAATTCCTGAATTCTTGGTATTTTGGCATCTACGTTCTTTCTTTAGCTAAGTTTGTAGTTAGAGATTACAATTGAGTTCCGCAATTGACGTGTTTGATCCAGAAACCTGAAAAAGGAAGATTATAATGAAGTTCATTAGTTTTCTCTCTTCCCACTTTATATCTTTTCTGTAATATTCTATGAATTTTCCATTTCTTTCTCTTAGATGGAAGTGGAACTTTGCTCCCCTGTTGGAACCAATGAATCAGACGGTGTTTTTGTTTTAATTCTCACTCTGTCTAGGTATTGTAATCTTGTAAAGTCAGTCCTGTGAAAGAAATTATTCCGTTAACCCAGTTACTAAGGGGACAAAATCTGAAGGAACAATAACACTGAGTTATTGACCATCCAGAGAAAGGATTCTGTTTACTTCTCATATGTAGGTCATCTTAAAGTTTCTAATGATTCGAAAGCCTAGTGCTTTTAGCCTTTGAAATGGAGCAGCCTGCAACCAATTTAAGTTGCCTTTTCCTTTGAGTATACTTGGGTTCATTGGGCCAAGATGAAAAGTTGTGTTACAATGAAATGTCGTTAAATTGCAGTGATATGGGCCTCTTCTATACTGCAAATAGTTATGTTGTGTTCTTGGTTTCTCTGATTTCTTGAGTGGTCTACAGTTTGCTTTCAAGGGTTTAAACTTAAAAGTTCTAATCAAATACTTGATTTAAAGTTTGAAGTTGTTAAACCATTACTACTTTGAGCCACCTTAGTATTTTGCCTTCGTCTTTCTGCCTTGAATGAACACATTTAGATAATGCAGTAGGATTCGGATTGACAACTATAAGAAACATTAATGAGAAGATTCTAAAGCATCTCAACTAACAGTACCAGACGTCATATCCCTTTTGGATAAATAGTTTTACATTGAAGCAAGATCAAGTCAAATTCTCCTTGTAATTGTGTGCACAAACTTTTGCTTGCTTTGGATATATCACCCATATTTTCTCAAATCCGACACTTCACGGGTGACCATCCCTTGTTAATTTGCCGTGGTGAATGGAAGAGCTGTCTGATCAACTAAAATGCTTTCATTAAAAGCTTAAACTTCACTATAATGCAACATATTTTTTTAGTGTAGTTGCTAACTGCACTGCAAGAAGTAAAGCAGAACAAGAAGATGAATTAACTATTTTCCATTGTAATGAATAGTTGATGGAATTACTCTGCTAAGTTGGTTTTATTTTTATGTAGAAGATGATTCCTGCAACCTATCATCCAACCCACAGTAGGACCCTTCCCCCACCAGATCAGGGTAAGCAAGAGAAGTTTTTCTTCATTACTATACTTTGTATCTTGATTCCTTTAGTAGTTATCCACTGTTGGCTTTAGTTTCCATCTCCTGCTGTTTACTCACGAAAGAGCCCGGTTGTTGATACCGTGTCACTGATTTTTCCTGCAGTTATAAATACAGAGGCCAAAAATATACTTATACGACACATTTATCAGCATACAGAAGAGAAGGTTAGTAAAAGAAAAATGGTATGCTTTGATATGAAATACCTTCTATACATGGGTGAGACCACTCACACATTCCTTGTGGACTTTCCCTGGTCTTTGTAATGACAGTCAAGAACAAAGAGACCTGCAGCCGAGCATCCCGTGCCCGAGCACGGAAGCAAGCAACCAAGAGCATCTACTACCAACACTTCAAATTGA

mRNA sequence

ATGGGGTCTATGCTCGGTGACTGCCGTCATATGACCCTCACAACTTCAGCCAATTCCGATCCTCTGATCCTTCAACTCCTTCCTAGGACTCGTCCAGTTCCCCCACCAGATCAGGAGGCTACAAAAAGAACGCAAAAGCTTCAAAATTCTAGTAGAATGGAGCCAGCAGGTTTATTCCAATCCTCCATGAGATTTTTCTCCGATCAAGAACTCTGCTACGCCGATATCCTCACTCCTCAAGAGGTTGTGGCCAGAATTCAAGTAGCTGTCCTCAACTTCCTCAGAATTCTCAGCTCCCCCACTCCAGCCATCTCAAATCTTCCTCTGATTGATCGAAGATCGAGCAATAGCCGAGTGAATCAAGGAATTTTAATGGATGCTTCATGGATTTTCCTTTCGCACTCCTTTTGTACGAGGTCTTTGATGAGAGCCAATGCTGCCAAGGCCTTTGTTAGAGTGTGGAAGCTGATGGAGATGTGCTCTCAGATTCTGATTCAGGATAAGCGAGTGACGCAGAGGGAGCTCTTCTACAAGCTACTCTGTAATTCACCTGCTTATTTTCCGACTCAGTTGCATGTCAATAGGACAGTTCAAGATGTTGTAGCCTTACTTCGATGTAGCCGTTACAGCCTTGGCATTATGGCATCTAGCAGGGGACTTGTTGCCGGCCGTCTACTGTTGCAGGCACATTGCGCTGCCTTTCTTATTGATTTGGAGCCAGAGCAAGAAGTTGTGGACTGTACTGCCTGTGGGTCTTCTGGATATGCCATTTCAGGTGACTTGGACTTGTTGCAGAAGTTGACTCTGAAGACTGATGCTCGGTACGTAATTGTAATTGAAAAGCATGCAATATTCCAGCGGTTGGCAGAGGATCACGTTTTCAATCACATTCCCAGTATTCTTATCACAGCCAAAGGATATCCAGACATAGCCACAAGGTACTTTCTTCACAGAATTAGCAAAACGTTTCCTCTTCTGCCAATATTCGGCCTTGTTGATTGGAACCCTGCGGGATTGGCTATATTATGCACCTTCAAGTATGGAAGTATAGGGATGGGCTTGGAGGCGTACAGATATGCTTGCAATGTTAAATGGTTGGGAGTACGAGGCGACGATTTACAACTGATACCACAAGAATCTCTGGTTCCACTCAAGCCCCGGGACCTACAAATTGCCAAAAGCTTGATGTCCTCAGAAATATTACAGGAGAATTATCGACAAGAGCTGACCTTAATGGTTGAGAGAGGGCAAAAGGCTGAACTTGAAGCTTTATACCACAATGGATTTGATTATTTGGAGAACTGCTTCAGCTATAAAGATACCCCAGATTTTACTGTTACCGTGCCAAAGAAGTTGTCATACTGCGGTGTCACCGGAGTCTTCATCGTCACTTTCATCAAAGGAAGTCTTTCTCCCTTGAAAGTAGCAGCCAGCAGCATTCTCATGGGGTCTATGCTCGGTGACCTGCCGTCATATGACCCTCACAACTTCAGCCAACTCCGACCCTCCGATCCTTCGACTCCTTCTAAGATGATTCCTGCAACCTATCATCCAACCCACAGTAGGACCCTTCCCCCACCAGATCAGGTTATAAATACAGAGGCCAAAAATATACTTATACGACACATTTATCAGCATACAGAAGAGAAGTCAAGAACAAAGAGACCTGCAGCCGAGCATCCCGTGCCCGAGCACGGAAGCAAGCAACCAAGAGCATCTACTACCAACACTTCAAATTGA

Coding sequence (CDS)

ATGGGGTCTATGCTCGGTGACTGCCGTCATATGACCCTCACAACTTCAGCCAATTCCGATCCTCTGATCCTTCAACTCCTTCCTAGGACTCGTCCAGTTCCCCCACCAGATCAGGAGGCTACAAAAAGAACGCAAAAGCTTCAAAATTCTAGTAGAATGGAGCCAGCAGGTTTATTCCAATCCTCCATGAGATTTTTCTCCGATCAAGAACTCTGCTACGCCGATATCCTCACTCCTCAAGAGGTTGTGGCCAGAATTCAAGTAGCTGTCCTCAACTTCCTCAGAATTCTCAGCTCCCCCACTCCAGCCATCTCAAATCTTCCTCTGATTGATCGAAGATCGAGCAATAGCCGAGTGAATCAAGGAATTTTAATGGATGCTTCATGGATTTTCCTTTCGCACTCCTTTTGTACGAGGTCTTTGATGAGAGCCAATGCTGCCAAGGCCTTTGTTAGAGTGTGGAAGCTGATGGAGATGTGCTCTCAGATTCTGATTCAGGATAAGCGAGTGACGCAGAGGGAGCTCTTCTACAAGCTACTCTGTAATTCACCTGCTTATTTTCCGACTCAGTTGCATGTCAATAGGACAGTTCAAGATGTTGTAGCCTTACTTCGATGTAGCCGTTACAGCCTTGGCATTATGGCATCTAGCAGGGGACTTGTTGCCGGCCGTCTACTGTTGCAGGCACATTGCGCTGCCTTTCTTATTGATTTGGAGCCAGAGCAAGAAGTTGTGGACTGTACTGCCTGTGGGTCTTCTGGATATGCCATTTCAGGTGACTTGGACTTGTTGCAGAAGTTGACTCTGAAGACTGATGCTCGGTACGTAATTGTAATTGAAAAGCATGCAATATTCCAGCGGTTGGCAGAGGATCACGTTTTCAATCACATTCCCAGTATTCTTATCACAGCCAAAGGATATCCAGACATAGCCACAAGGTACTTTCTTCACAGAATTAGCAAAACGTTTCCTCTTCTGCCAATATTCGGCCTTGTTGATTGGAACCCTGCGGGATTGGCTATATTATGCACCTTCAAGTATGGAAGTATAGGGATGGGCTTGGAGGCGTACAGATATGCTTGCAATGTTAAATGGTTGGGAGTACGAGGCGACGATTTACAACTGATACCACAAGAATCTCTGGTTCCACTCAAGCCCCGGGACCTACAAATTGCCAAAAGCTTGATGTCCTCAGAAATATTACAGGAGAATTATCGACAAGAGCTGACCTTAATGGTTGAGAGAGGGCAAAAGGCTGAACTTGAAGCTTTATACCACAATGGATTTGATTATTTGGAGAACTGCTTCAGCTATAAAGATACCCCAGATTTTACTGTTACCGTGCCAAAGAAGTTGTCATACTGCGGTGTCACCGGAGTCTTCATCGTCACTTTCATCAAAGGAAGTCTTTCTCCCTTGAAAGTAGCAGCCAGCAGCATTCTCATGGGGTCTATGCTCGGTGACCTGCCGTCATATGACCCTCACAACTTCAGCCAACTCCGACCCTCCGATCCTTCGACTCCTTCTAAGATGATTCCTGCAACCTATCATCCAACCCACAGTAGGACCCTTCCCCCACCAGATCAGGTTATAAATACAGAGGCCAAAAATATACTTATACGACACATTTATCAGCATACAGAAGAGAAGTCAAGAACAAAGAGACCTGCAGCCGAGCATCCCGTGCCCGAGCACGGAAGCAAGCAACCAAGAGCATCTACTACCAACACTTCAAATTGA

Protein sequence

MGSMLGDCRHMTLTTSANSDPLILQLLPRTRPVPPPDQEATKRTQKLQNSSRMEPAGLFQSSMRFFSDQELCYADILTPQEVVARIQVAVLNFLRILSSPTPAISNLPLIDRRSSNSRVNQGILMDASWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILIQDKRVTQRELFYKLLCNSPAYFPTQLHVNRTVQDVVALLRCSRYSLGIMASSRGLVAGRLLLQAHCAAFLIDLEPEQEVVDCTACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDHVFNHIPSILITAKGYPDIATRYFLHRISKTFPLLPIFGLVDWNPAGLAILCTFKYGSIGMGLEAYRYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSSEILQENYRQELTLMVERGQKAELEALYHNGFDYLENCFSYKDTPDFTVTVPKKLSYCGVTGVFIVTFIKGSLSPLKVAASSILMGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTEEKSRTKRPAAEHPVPEHGSKQPRASTTNTSN

Homology

[Close]

BLAST of Clc01G02460.1 vs. NCBI nr
Match: TYG57557.1 (hypothetical protein ES288_D08G152200v1 [Gossypium darwinii])

HSP 1 Score: 719.2 bits (1855), Expect = 2.9e-203
Identity = 364/518 (70.27%), Postives = 419/518 (80.89%), Query Frame = 0


Query: 58  LFQSSMRFFSDQELCYADILTPQEVVARIQVAVLNFLRILSSPTPAISNLPLIDRRSSNS 117
           L +SSM+FFSDQ+LC+ADIL P EV ARIQVAVLNFL+ILSSP PAIS+LPLI+R+SSNS
Sbjct: 4   LSKSSMKFFSDQQLCFADILLPHEVQARIQVAVLNFLKILSSPDPAISDLPLINRKSSNS 63

Query: 118 RVNQGILMDASWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILIQDKRVTQRELFY 177
           RV++GIL D SWIFLSHSFC+RSLM+ANA KAF+RVWK+MEMC + L Q+KRVTQRELFY
Sbjct: 64  RVSEGILTDVSWIFLSHSFCSRSLMKANATKAFIRVWKVMEMCFEFLTQEKRVTQRELFY 123

Query: 178 KLLCNSPAYFPTQLHVNRTVQDVVALLRCSRYSLGIMASSRGLVAGRLLLQAHCAAFLID 237
           KLLC+SP YF +QL VNRT+QDVVALLRCSRYSLGIMASS+GLVAGR+LLQ         
Sbjct: 124 KLLCDSPHYFSSQLQVNRTIQDVVALLRCSRYSLGIMASSKGLVAGRILLQ--------- 183

Query: 238 LEPEQEVVDCTACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDHVFNHI 297
            EP QE VDC+ACGSSGYAISGDL+LL+ L +KTDARY++V+EKHAIFQRLAEDHVFN I
Sbjct: 184 -EPNQEAVDCSACGSSGYAISGDLNLLESLIMKTDARYIVVVEKHAIFQRLAEDHVFNQI 243

Query: 298 PSILITAKGYPDIATRYFLHRISKTFPLLPIFGLVDWNPAGLAILCTFKYGSIGMGLEAY 357
           PSIL+TAKGYPDIATR+ LHR+S+ FP LPI  LVDWNPAGLAIL T+K+GSIGMGLEAY
Sbjct: 244 PSILLTAKGYPDIATRFLLHRMSRAFPDLPILALVDWNPAGLAILSTYKFGSIGMGLEAY 303

Query: 358 RYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSSEILQENYRQELTLMVERGQ 417
           RYACNVKWLG+RGDDLQLIPQ+SL PLKPRDLQIA+SL+SS  LQ+NYRQEL +M++ GQ
Sbjct: 304 RYACNVKWLGLRGDDLQLIPQQSLAPLKPRDLQIARSLISSTTLQDNYRQELAVMMQSGQ 363

Query: 418 KAELEALYHNGFDYLENCFSYKDTPDFTVTVPKKLSYCGVTGVFIVTFIKGSLSPLKVAA 477
           +AE+EALY NG+DYL    S+  +P                                   
Sbjct: 364 RAEIEALYFNGYDYLGQKPSFHSSP----------------------------------- 423

Query: 478 SSILMGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKN 537
               MGSMLG+LPS+DPHNFSQLRPSDPS PSKM+P+TY PTHSRTLPPPDQVI TEAKN
Sbjct: 424 ----MGSMLGNLPSFDPHNFSQLRPSDPSNPSKMVPSTYRPTHSRTLPPPDQVIATEAKN 472

Query: 538 ILIRHIYQHTEEKSRTKRPAAEHPVPEHGSKQPRASTT 576
           ILIR+IYQ  EEK R+K  A EH +PEHG KQ R ST+
Sbjct: 484 ILIRNIYQRAEEKLRSKHAATEHLIPEHGCKQTRPSTS 472

[Close]

BLAST of Clc01G02460.1 vs. NCBI nr
Match: KAG4134081.1 (hypothetical protein ERO13_D08G134500v2 [Gossypium hirsutum])

HSP 1 Score: 717.6 bits (1851), Expect = 8.5e-203
Identity = 365/518 (70.46%), Postives = 420/518 (81.08%), Query Frame = 0


Query: 58  LFQSSMRFFSDQELCYADILTPQEVVARIQVAVLNFLRILSSPTPAISNLPLIDRRSSNS 117
           L +SSM+FFSDQ+LC+ADIL P EV ARIQVAVLNFL+ILSSP PAIS+LPLI+R+SSNS
Sbjct: 4   LSKSSMKFFSDQQLCFADILLPHEVQARIQVAVLNFLKILSSPDPAISDLPLINRKSSNS 63

Query: 118 RVNQGILMDASWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILIQDKRVTQRELFY 177
           RV++GIL D SWIFLSHSFC+RSLM+ANA KAF+RVWK+MEMC + L Q+KRVTQRELFY
Sbjct: 64  RVSEGILTDVSWIFLSHSFCSRSLMKANATKAFIRVWKVMEMCFEFLTQEKRVTQRELFY 123

Query: 178 KLLCNSPAYFPTQLHVNRTVQDVVALLRCSRYSLGIMASSRGLVAGRLLLQAHCAAFLID 237
           KLLC+SP YF +QL VNRT+QDVVALLRCSRYSLGIMASS+GLVAGR+LLQ         
Sbjct: 124 KLLCDSPHYFSSQLQVNRTIQDVVALLRCSRYSLGIMASSKGLVAGRILLQ--------- 183

Query: 238 LEPEQEVVDCTACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDHVFNHI 297
            EP QE VDC+ACGSSGYAISGDL+LL+ L +KTDARY++V+EKHAIFQRLAEDHVFN I
Sbjct: 184 -EPNQEAVDCSACGSSGYAISGDLNLLESLIMKTDARYIVVVEKHAIFQRLAEDHVFNQI 243

Query: 298 PSILITAKGYPDIATRYFLHRISKTFPLLPIFGLVDWNPAGLAILCTFKYGSIGMGLEAY 357
           PSIL+TAKGYPDIATR+ LHR+S+ FP LPI  LVDWNPAGLAIL T+K+GSIGMGLEAY
Sbjct: 244 PSILLTAKGYPDIATRFLLHRMSRAFPDLPILALVDWNPAGLAILSTYKFGSIGMGLEAY 303

Query: 358 RYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSSEILQENYRQELTLMVERGQ 417
           RYACNVKWLG+RGDDLQLIPQ+SL PLKPRDLQIA+SL+SS  LQ+NYRQEL +M++ GQ
Sbjct: 304 RYACNVKWLGLRGDDLQLIPQQSLAPLKPRDLQIARSLISSTTLQDNYRQELAVMMQSGQ 363

Query: 418 KAELEALYHNGFDYLENCFSYKDTPDFTVTVPKKLSYCGVTGVFIVTFIKGSLSPLKVAA 477
           +AE+EALY NG+DYL                                      +  K + 
Sbjct: 364 RAEIEALYFNGYDYLG-------------------------------------AGQKPSF 423

Query: 478 SSILMGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKN 537
            S  MGSMLG+LPS+DPHNFSQLRPSDPS PSKM+P+TY PTHSRTLPPPDQVI TEAKN
Sbjct: 424 HSSPMGSMLGNLPSFDPHNFSQLRPSDPSNPSKMVPSTYRPTHSRTLPPPDQVIATEAKN 474

Query: 538 ILIRHIYQHTEEKSRTKRPAAEHPVPEHGSKQPRASTT 576
           ILIR+IYQ  EEK R+KR A EH +PEHG KQ R ST+
Sbjct: 484 ILIRNIYQRAEEKLRSKRAATEHLIPEHGCKQTRPSTS 474

[Close]

BLAST of Clc01G02460.1 vs. NCBI nr
Match: KAA0042721.1 (meiotic recombination protein SPO11-2 [Cucumis melo var. makuwa])

HSP 1 Score: 709.9 bits (1831), Expect = 1.8e-200
Identity = 352/381 (92.39%), Postives = 369/381 (96.85%), Query Frame = 0


Query: 53  MEPAGLFQSSMRFFSDQELCYADILTPQEVVARIQVAVLNFLRILSSPTPAISNLPLIDR 112
           MEPAGLF+SSMRFFSDQELCYADILTPQEVVARIQ+AVLNFLRIL+S +PAISNLPLIDR
Sbjct: 1   MEPAGLFESSMRFFSDQELCYADILTPQEVVARIQIAVLNFLRILNSSSPAISNLPLIDR 60

Query: 113 RSSNSRVNQGILMDASWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILIQDKRVTQ 172
           RSSNSRV+QGIL D SWIFLSHSFCTRSLMR NA+KAFVRVWKLMEMCSQILIQDKRVTQ
Sbjct: 61  RSSNSRVSQGILTDDSWIFLSHSFCTRSLMRPNASKAFVRVWKLMEMCSQILIQDKRVTQ 120

Query: 173 RELFYKLLCNSPAYFPTQLHVNRTVQDVVALLRCSRYSLGIMASSRGLVAGRLLLQAHCA 232
           RELFYKLLC+SPAYF TQLHVNRT+QDVVALL+CSRYSLGIMASSRGLVAGRLLLQAHC 
Sbjct: 121 RELFYKLLCDSPAYFSTQLHVNRTIQDVVALLQCSRYSLGIMASSRGLVAGRLLLQAHCT 180

Query: 233 AFLIDLEPEQEVVDCTACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDH 292
           AFLI LEPEQEVVDCTACGSSGY ISGDLDLL+ LTLKTDARY+IVIEKHAIFQRLA+D 
Sbjct: 181 AFLIGLEPEQEVVDCTACGSSGYPISGDLDLLKMLTLKTDARYIIVIEKHAIFQRLADDR 240

Query: 293 VFNHIPSILITAKGYPDIATRYFLHRISKTFPLLPIFGLVDWNPAGLAILCTFKYGSIGM 352
           VFNHIPSILITAKGYPD+ATRYFLH+I KTFP LP+FGLVDWNPAG+AILCTFKYGSIGM
Sbjct: 241 VFNHIPSILITAKGYPDLATRYFLHKIGKTFPHLPMFGLVDWNPAGMAILCTFKYGSIGM 300

Query: 353 GLEAYRYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSSEILQENYRQELTLM 412
           GLEAYRYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSS+ILQENYRQELTLM
Sbjct: 301 GLEAYRYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSSKILQENYRQELTLM 360

Query: 413 VERGQKAELEALYHNGFDYLE 434
           VERGQKAELEALYHNGFDYLE
Sbjct: 361 VERGQKAELEALYHNGFDYLE 381

[Close]

BLAST of Clc01G02460.1 vs. NCBI nr
Match: KAG7036015.1 (Meiotic recombination protein SPO11-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 693.7 bits (1789), Expect = 1.3e-195
Identity = 348/381 (91.34%), Postives = 363/381 (95.28%), Query Frame = 0


Query: 53  MEPAGLFQSSMRFFSDQELCYADILTPQEVVARIQVAVLNFLRILSSPTPAISNLPLIDR 112
           ME  GLF+SSMRFFSDQELCYADILTPQEV+ARIQVAVLNFLRILSS TPAISNLPLIDR
Sbjct: 1   METTGLFKSSMRFFSDQELCYADILTPQEVLARIQVAVLNFLRILSSSTPAISNLPLIDR 60

Query: 113 RSSNSRVNQGILMDASWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILIQDKRVTQ 172
            SSNSRVNQGIL D SWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQIL+Q+KRVTQ
Sbjct: 61  SSSNSRVNQGILTDESWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILLQEKRVTQ 120

Query: 173 RELFYKLLCNSPAYFPTQLHVNRTVQDVVALLRCSRYSLGIMASSRGLVAGRLLLQAHCA 232
           RELFYKLLC+SPAYFPTQLHVNRT+QDVVALLRCSR+SLG+MASSRGLVAGRLLLQAHC+
Sbjct: 121 RELFYKLLCDSPAYFPTQLHVNRTIQDVVALLRCSRFSLGVMASSRGLVAGRLLLQAHCS 180

Query: 233 AFLIDLEPEQEVVDCTACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDH 292
                 EPEQE VDC ACG+SGYAISGDLDLL+KLTLKTDARYVIVIEKHAIFQRLAED 
Sbjct: 181 ------EPEQETVDCAACGTSGYAISGDLDLLRKLTLKTDARYVIVIEKHAIFQRLAEDR 240

Query: 293 VFNHIPSILITAKGYPDIATRYFLHRISKTFPLLPIFGLVDWNPAGLAILCTFKYGSIGM 352
           VFNHIPSILITAKGYPD+ATRYFLHRISKTFP LPIFGLVDWNPAGLAILCTFKYGSIGM
Sbjct: 241 VFNHIPSILITAKGYPDMATRYFLHRISKTFPHLPIFGLVDWNPAGLAILCTFKYGSIGM 300

Query: 353 GLEAYRYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSSEILQENYRQELTLM 412
           GLEAYRYACNVKWLG+RGDD+QLIPQESLV LKPRDLQIAKSLMSSEILQENYR+ELTLM
Sbjct: 301 GLEAYRYACNVKWLGMRGDDVQLIPQESLVSLKPRDLQIAKSLMSSEILQENYREELTLM 360

Query: 413 VERGQKAELEALYHNGFDYLE 434
           VE GQKAELEALYHNGFDYLE
Sbjct: 361 VEGGQKAELEALYHNGFDYLE 375

[Close]

BLAST of Clc01G02460.1 vs. NCBI nr
Match: XP_038906472.1 (meiotic recombination protein SPO11-2 isoform X1 [Benincasa hispida] >XP_038906473.1 meiotic recombination protein SPO11-2 isoform X1 [Benincasa hispida] >XP_038906474.1 meiotic recombination protein SPO11-2 isoform X1 [Benincasa hispida] >XP_038906475.1 meiotic recombination protein SPO11-2 isoform X1 [Benincasa hispida] >XP_038906476.1 meiotic recombination protein SPO11-2 isoform X1 [Benincasa hispida])

HSP 1 Score: 690.6 bits (1781), Expect = 1.1e-194
Identity = 349/381 (91.60%), Postives = 361/381 (94.75%), Query Frame = 0


Query: 53  MEPAGLFQSSMRFFSDQELCYADILTPQEVVARIQVAVLNFLRILSSPTPAISNLPLIDR 112
           MEP GLF+SSMRFFSDQELCYADILTPQEVVARIQ+AVLNFLRIL+S TPAISNLPLIDR
Sbjct: 1   MEPTGLFKSSMRFFSDQELCYADILTPQEVVARIQIAVLNFLRILTSSTPAISNLPLIDR 60

Query: 113 RSSNSRVNQGILMDASWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILIQDKRVTQ 172
           RSSNSRVNQGIL D  WIFLSHSFCTRSLMR+NAAKAFVRVWKLMEMCSQILIQDKRVTQ
Sbjct: 61  RSSNSRVNQGILTDDLWIFLSHSFCTRSLMRSNAAKAFVRVWKLMEMCSQILIQDKRVTQ 120

Query: 173 RELFYKLLCNSPAYFPTQLHVNRTVQDVVALLRCSRYSLGIMASSRGLVAGRLLLQAHCA 232
           RELFYKLLC+SPAYFPTQLHVNRT+QDVVALL+CSR SLGIMASSRGLVAGRLLLQ    
Sbjct: 121 RELFYKLLCDSPAYFPTQLHVNRTIQDVVALLQCSRCSLGIMASSRGLVAGRLLLQ---- 180

Query: 233 AFLIDLEPEQEVVDCTACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDH 292
                 EPEQEVVDCTACGSSGYAISGDLDLLQKLTLKTDARY+IVIEKHAIFQRLAED 
Sbjct: 181 ------EPEQEVVDCTACGSSGYAISGDLDLLQKLTLKTDARYIIVIEKHAIFQRLAEDR 240

Query: 293 VFNHIPSILITAKGYPDIATRYFLHRISKTFPLLPIFGLVDWNPAGLAILCTFKYGSIGM 352
           +FNHIPSILITAKGYPD+ATR+FLHRISKTFP LPIFGLVDWNPAGLAILCTFKYGSIGM
Sbjct: 241 IFNHIPSILITAKGYPDLATRFFLHRISKTFPHLPIFGLVDWNPAGLAILCTFKYGSIGM 300

Query: 353 GLEAYRYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSSEILQENYRQELTLM 412
           GLEAYRYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSS+ILQE YRQELTLM
Sbjct: 301 GLEAYRYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSSKILQEKYRQELTLM 360

Query: 413 VERGQKAELEALYHNGFDYLE 434
           VE GQKAELEALYHNGFDYLE
Sbjct: 361 VEIGQKAELEALYHNGFDYLE 371

[Close]

BLAST of Clc01G02460.1 vs. ExPASy Swiss-Prot
Match: Q9M4A1 (Meiotic recombination protein SPO11-2 OS=Arabidopsis thaliana OX=3702 GN=SPO11-2 PE=1 SV=1)

HSP 1 Score: 541.2 bits (1393), Expect = 1.4e-152
Identity = 272/379 (71.77%), Postives = 320/379 (84.43%), Query Frame = 0


Query: 54  EPAGLFQSSMRFFSDQELCYADILTPQEVVARIQVAVLNFLRILSSPTPAISNLPLIDRR 113
           E +GL  SSM+FFSDQ L YADIL P E  ARI+V+VLN LRIL+SP PAIS+L LI+R+
Sbjct: 3   ESSGL--SSMKFFSDQHLSYADILLPHEARARIEVSVLNLLRILNSPDPAISDLSLINRK 62

Query: 114 SSNSRVNQGILMDASWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILIQDKRVTQR 173
            SNS +N+GIL D S+IFLS SF   SL  A  AKAFVRVWK+ME+C QIL+Q+KRVTQR
Sbjct: 63  RSNSCINKGILTDVSYIFLSTSFTKSSLTNAKTAKAFVRVWKVMEICFQILLQEKRVTQR 122

Query: 174 ELFYKLLCNSPAYFPTQLHVNRTVQDVVALLRCSRYSLGIMASSRGLVAGRLLLQAHCAA 233
           ELFYKLLC+SP YF +Q+ VNR+VQDVVALLRCSRYSLGIMASSRGLVAGRL LQ     
Sbjct: 123 ELFYKLLCDSPDYFSSQIEVNRSVQDVVALLRCSRYSLGIMASSRGLVAGRLFLQ----- 182

Query: 234 FLIDLEPEQEVVDCTACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDHV 293
                EP +E VDC+ACGSSG+AI+GDL+LL    ++TDARY+I++EKHAIF RL ED V
Sbjct: 183 -----EPGKEAVDCSACGSSGFAITGDLNLLDNTIMRTDARYIIIVEKHAIFHRLVEDRV 242

Query: 294 FNHIPSILITAKGYPDIATRYFLHRISKTFPLLPIFGLVDWNPAGLAILCTFKYGSIGMG 353
           FNHIP + ITAKGYPDIATR+FLHR+S TFP LPI  LVDWNPAGLAILCTFK+GSIGMG
Sbjct: 243 FNHIPCVFITAKGYPDIATRFFLHRMSTTFPDLPILVLVDWNPAGLAILCTFKFGSIGMG 302

Query: 354 LEAYRYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSSEILQENYRQELTLMV 413
           LEAYRYACNVKW+G+RGDDL LIP+ESLVPLKP+D QIAKSL+SS+ILQENY +EL+LMV
Sbjct: 303 LEAYRYACNVKWIGLRGDDLNLIPEESLVPLKPKDSQIAKSLLSSKILQENYIEELSLMV 362

Query: 414 ERGQKAELEALYHNGFDYL 433
           + G++AE+EALY +G++YL
Sbjct: 363 QTGKRAEIEALYCHGYNYL 369

[Close]

BLAST of Clc01G02460.1 vs. ExPASy Swiss-Prot
Match: Q5ZPI9 (Meiotic recombination protein SPO11-2 OS=Oryza sativa subsp. indica OX=39946 GN=SPO11-2 PE=1 SV=1)

HSP 1 Score: 473.4 bits (1217), Expect = 3.7e-132
Identity = 244/382 (63.87%), Postives = 301/382 (78.80%), Query Frame = 0


Query: 53  MEPAGLFQSSMRFFSDQELCYADILTPQEVVARIQVAVLNFLRILSSP-TPAISNLPLID 112
           M  AG+  +S+ F +D+ LC ADIL P EV ARI+VAVLNFL  L+ P  PAIS LPLI 
Sbjct: 1   MAEAGVAAASL-FGADRRLCSADILPPAEVRARIEVAVLNFLAALTDPAAPAISALPLIS 60

Query: 113 RRSSNSRVNQGILM-DASWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILIQDKRV 172
           R ++N  + + +L  D S ++LS++ C RSL RAN AKAFVRVWK+MEMC +IL + K V
Sbjct: 61  RGAANRGLRRALLRDDVSSVYLSYASCKRSLTRANDAKAFVRVWKVMEMCYKILGEGKLV 120

Query: 173 TQRELFYKLLCNSPAYFPTQLHVNRTVQDVVALLRCSRYSLGIMASSRGLVAGRLLLQAH 232
           T RELFY LL  SP YF  Q HVN+TVQDVV+LLRC+R SLGIMASSRG + GRL+LQ  
Sbjct: 121 TLRELFYTLLSESPTYFTCQRHVNQTVQDVVSLLRCTRQSLGIMASSRGALIGRLVLQG- 180

Query: 233 CAAFLIDLEPEQEVVDCTACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAE 292
                    PE+E VDC+  G SG+AI+GDL++L KL   +DARY+IV+EK AIFQRLAE
Sbjct: 181 ---------PEEEHVDCSILGPSGHAITGDLNVLSKLIFSSDARYIIVVEKDAIFQRLAE 240

Query: 293 DHVFNHIPSILITAKGYPDIATRYFLHRISKTFPLLPIFGLVDWNPAGLAILCTFKYGSI 352
           D +++H+P ILITAKGYPD+ATR+ LHR+S+T+P +PIF LVDWNPAGLAILCT+KYGSI
Sbjct: 241 DRIYSHLPCILITAKGYPDLATRFILHRLSQTYPNMPIFALVDWNPAGLAILCTYKYGSI 300

Query: 353 GMGLEAYRYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSSEILQENYRQELT 412
            MGLE+YRYACNVKWLG+RGDDLQLIPQ +   LKPRDLQIAKSL+SS+ LQ+ +R ELT
Sbjct: 301 SMGLESYRYACNVKWLGLRGDDLQLIPQSAYQELKPRDLQIAKSLLSSKFLQDKHRAELT 360

Query: 413 LMVERGQKAELEALYHNGFDYL 433
           LM+E G++AE+EALY +GFD+L
Sbjct: 361 LMLETGKRAEIEALYSHGFDFL 371

[Close]

BLAST of Clc01G02460.1 vs. ExPASy Swiss-Prot
Match: Q6ZD95 (Meiotic recombination protein SPO11-2 OS=Oryza sativa subsp. japonica OX=39947 GN=SPO11-2 PE=2 SV=1)

HSP 1 Score: 472.2 bits (1214), Expect = 8.2e-132
Identity = 243/382 (63.61%), Postives = 301/382 (78.80%), Query Frame = 0


Query: 53  MEPAGLFQSSMRFFSDQELCYADILTPQEVVARIQVAVLNFLRILSSP-TPAISNLPLID 112
           M  AG+  +S+ F +D+ LC ADIL P EV ARI+VAVLNFL  L+ P  PAIS LPLI 
Sbjct: 1   MAEAGVAAASL-FGADRRLCSADILPPAEVRARIEVAVLNFLAALTDPAAPAISALPLIS 60

Query: 113 RRSSNSRVNQGILM-DASWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILIQDKRV 172
           R ++N  + + +L  D S ++LS++ C RSL RAN AKAFVRVWK+MEMC +IL + K V
Sbjct: 61  RGAANRGLRRALLRDDVSSVYLSYASCKRSLTRANDAKAFVRVWKVMEMCYKILGEGKLV 120

Query: 173 TQRELFYKLLCNSPAYFPTQLHVNRTVQDVVALLRCSRYSLGIMASSRGLVAGRLLLQAH 232
           T RELFY LL  SP YF  Q HVN+TVQDVV+LLRC+R SLGIMASSRG + GRL++Q  
Sbjct: 121 TLRELFYTLLSESPTYFTCQRHVNQTVQDVVSLLRCTRQSLGIMASSRGALIGRLVVQG- 180

Query: 233 CAAFLIDLEPEQEVVDCTACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAE 292
                    PE+E VDC+  G SG+AI+GDL++L KL   +DARY+IV+EK AIFQRLAE
Sbjct: 181 ---------PEEEHVDCSILGPSGHAITGDLNVLSKLIFSSDARYIIVVEKDAIFQRLAE 240

Query: 293 DHVFNHIPSILITAKGYPDIATRYFLHRISKTFPLLPIFGLVDWNPAGLAILCTFKYGSI 352
           D +++H+P ILITAKGYPD+ATR+ LHR+S+T+P +PIF LVDWNPAGLAILCT+KYGSI
Sbjct: 241 DRIYSHLPCILITAKGYPDLATRFILHRLSQTYPNMPIFALVDWNPAGLAILCTYKYGSI 300

Query: 353 GMGLEAYRYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSSEILQENYRQELT 412
            MGLE+YRYACNVKWLG+RGDDLQLIPQ +   LKPRDLQIAKSL+SS+ LQ+ +R ELT
Sbjct: 301 SMGLESYRYACNVKWLGLRGDDLQLIPQSAYQELKPRDLQIAKSLLSSKFLQDKHRAELT 360

Query: 413 LMVERGQKAELEALYHNGFDYL 433
           LM+E G++AE+EALY +GFD+L
Sbjct: 361 LMLETGKRAEIEALYSHGFDFL 371

[Close]

BLAST of Clc01G02460.1 vs. ExPASy Swiss-Prot
Match: Q9LZ03 (DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana OX=3702 GN=TOP6A PE=1 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.3e-41
Identity = 101/327 (30.89%), Postives = 175/327 (53.52%), Query Frame = 0


Query: 115 SNSRVNQGILMDASWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILIQDKRVTQRE 174
           S +  NQ  + +   I L      R     ++ +      +++ +  Q+ +++  VT+R+
Sbjct: 108 SRAASNQLYVPELDRIVLKDKSTLRPFASVSSVRKTTITTRILALIHQLCLRNIHVTKRD 167

Query: 175 LFYKLLCNSPAYFPTQLHVNRTVQDVVALLRCSRYSLGIMASSRGLVAGRLLLQAHCAAF 234
           LFY         F  Q   +  + DV  +L C+R SL ++A+ +G+V GRL+        
Sbjct: 168 LFY----TDVKLFQDQTQSDAVLDDVSCMLGCTRSSLNVIAAEKGVVVGRLI-------- 227

Query: 235 LIDLEPEQEVVDCTACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDHVF 294
                   +++DCT  G  G AI  ++D +    +++DA +++++EK A + RLAED  +
Sbjct: 228 ---FSDNGDMIDCTKMGMGGKAIPPNIDRVG--DMQSDAMFILLVEKDAAYMRLAEDRFY 287

Query: 295 NHIPSILITAKGYPDIATRYFLHRISKTFPLLPIFGLVDWNPAGLAILCTFKYGSIGMGL 354
           N  P I++TAKG PD+ATR FL ++      LP+  LVD +P GL IL  +  GS  M  
Sbjct: 288 NRFPCIIVTAKGQPDVATRLFLRKMKMELK-LPVLALVDSDPYGLKILSVYGCGSKNMSY 347

Query: 355 EAYRYAC-NVKWLGVRGDDLQ--LIPQESLVPLKPRDLQIAKSLMSSEILQEN--YRQEL 414
           ++      ++KWLG+R  DL    IP++  +P+  +D++  K ++  + +++N  + +EL
Sbjct: 348 DSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDMLEEDFVKKNPGWVEEL 407

Query: 415 TLMVERGQKAELEALYHNGFDYLENCF 437
            LMV+  QKAE++AL   GF YL   +
Sbjct: 408 NLMVKTKQKAEIQALSSFGFQYLSEVY 416

[Close]

BLAST of Clc01G02460.1 vs. ExPASy Swiss-Prot
Match: A2XFC1 (DNA topoisomerase 6 subunit A3 OS=Oryza sativa subsp. indica OX=39946 GN=TOP6A3 PE=1 SV=2)

HSP 1 Score: 169.9 bits (429), Expect = 8.7e-41
Identity = 107/327 (32.72%), Postives = 170/327 (51.99%), Query Frame = 0


Query: 115 SNSRVNQGILMDASWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILIQDKRVTQRE 174
           S +  NQ  L D   I L      R       A+      +++ +   +L +   VT+R+
Sbjct: 123 SRAASNQVYLPDLDRIVLVRRESARPFANVATARKATITARVLSLVHAVLRRGIHVTKRD 182

Query: 175 LFYKLLCNSPAYFPTQLHVNRTVQDVVALLRCSRYSLGIMASSRGLVAGRLLLQAHCAAF 234
           LFY         F  Q   +  + DV  +L C+R SL ++AS +G+V GRL         
Sbjct: 183 LFY----TDVKLFGDQAQSDAVLDDVSCMLGCTRSSLHVVASEKGVVVGRL--------- 242

Query: 235 LIDLEPEQEVVDCTACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDHVF 294
                 + + +DCT  G  G AI  ++D +    +++DA +++++EK A F RLAED  +
Sbjct: 243 --TFADDGDRIDCTRMGVGGKAIPPNIDRVS--GIESDALFILLVEKDAAFMRLAEDRFY 302

Query: 295 NHIPSILITAKGYPDIATRYFLHRISKTFPLLPIFGLVDWNPAGLAILCTFKYGSIGMGL 354
           N  P I++TAKG PD+ATR FL R+ K    LP+  LVD +P GL IL  +  GS  M  
Sbjct: 303 NRFPCIILTAKGQPDVATRLFLRRL-KVELKLPVLALVDSDPYGLKILSVYMCGSKNMSY 362

Query: 355 EAYRYAC-NVKWLGVRGDDLQ--LIPQESLVPLKPRDLQIAKSLMSSEILQEN--YRQEL 414
           ++      ++KWLGVR  DL    +P++  +P+   D+++ K L+  + +++N  + +EL
Sbjct: 363 DSANLTTPDIKWLGVRPSDLDKYRVPEQCRLPMTDHDIKVGKELLEEDFVKQNEGWVKEL 422

Query: 415 TLMVERGQKAELEALYHNGFDYLENCF 437
             M+   QKAE++AL   GF YL   +
Sbjct: 423 ETMLRTRQKAEIQALSSFGFQYLTEVY 431

[Close]

BLAST of Clc01G02460.1 vs. ExPASy TrEMBL
Match: A0A5D2BK52 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D08G152200v1 PE=3 SV=1)

HSP 1 Score: 719.2 bits (1855), Expect = 1.4e-203
Identity = 364/518 (70.27%), Postives = 419/518 (80.89%), Query Frame = 0


Query: 58  LFQSSMRFFSDQELCYADILTPQEVVARIQVAVLNFLRILSSPTPAISNLPLIDRRSSNS 117
           L +SSM+FFSDQ+LC+ADIL P EV ARIQVAVLNFL+ILSSP PAIS+LPLI+R+SSNS
Sbjct: 4   LSKSSMKFFSDQQLCFADILLPHEVQARIQVAVLNFLKILSSPDPAISDLPLINRKSSNS 63

Query: 118 RVNQGILMDASWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILIQDKRVTQRELFY 177
           RV++GIL D SWIFLSHSFC+RSLM+ANA KAF+RVWK+MEMC + L Q+KRVTQRELFY
Sbjct: 64  RVSEGILTDVSWIFLSHSFCSRSLMKANATKAFIRVWKVMEMCFEFLTQEKRVTQRELFY 123

Query: 178 KLLCNSPAYFPTQLHVNRTVQDVVALLRCSRYSLGIMASSRGLVAGRLLLQAHCAAFLID 237
           KLLC+SP YF +QL VNRT+QDVVALLRCSRYSLGIMASS+GLVAGR+LLQ         
Sbjct: 124 KLLCDSPHYFSSQLQVNRTIQDVVALLRCSRYSLGIMASSKGLVAGRILLQ--------- 183

Query: 238 LEPEQEVVDCTACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDHVFNHI 297
            EP QE VDC+ACGSSGYAISGDL+LL+ L +KTDARY++V+EKHAIFQRLAEDHVFN I
Sbjct: 184 -EPNQEAVDCSACGSSGYAISGDLNLLESLIMKTDARYIVVVEKHAIFQRLAEDHVFNQI 243

Query: 298 PSILITAKGYPDIATRYFLHRISKTFPLLPIFGLVDWNPAGLAILCTFKYGSIGMGLEAY 357
           PSIL+TAKGYPDIATR+ LHR+S+ FP LPI  LVDWNPAGLAIL T+K+GSIGMGLEAY
Sbjct: 244 PSILLTAKGYPDIATRFLLHRMSRAFPDLPILALVDWNPAGLAILSTYKFGSIGMGLEAY 303

Query: 358 RYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSSEILQENYRQELTLMVERGQ 417
           RYACNVKWLG+RGDDLQLIPQ+SL PLKPRDLQIA+SL+SS  LQ+NYRQEL +M++ GQ
Sbjct: 304 RYACNVKWLGLRGDDLQLIPQQSLAPLKPRDLQIARSLISSTTLQDNYRQELAVMMQSGQ 363

Query: 418 KAELEALYHNGFDYLENCFSYKDTPDFTVTVPKKLSYCGVTGVFIVTFIKGSLSPLKVAA 477
           +AE+EALY NG+DYL    S+  +P                                   
Sbjct: 364 RAEIEALYFNGYDYLGQKPSFHSSP----------------------------------- 423

Query: 478 SSILMGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKN 537
               MGSMLG+LPS+DPHNFSQLRPSDPS PSKM+P+TY PTHSRTLPPPDQVI TEAKN
Sbjct: 424 ----MGSMLGNLPSFDPHNFSQLRPSDPSNPSKMVPSTYRPTHSRTLPPPDQVIATEAKN 472

Query: 538 ILIRHIYQHTEEKSRTKRPAAEHPVPEHGSKQPRASTT 576
           ILIR+IYQ  EEK R+K  A EH +PEHG KQ R ST+
Sbjct: 484 ILIRNIYQRAEEKLRSKHAATEHLIPEHGCKQTRPSTS 472

[Close]

BLAST of Clc01G02460.1 vs. ExPASy TrEMBL
Match: A0A5A7TMD5 (Meiotic recombination protein SPO11-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G002190 PE=3 SV=1)

HSP 1 Score: 709.9 bits (1831), Expect = 8.6e-201
Identity = 352/381 (92.39%), Postives = 369/381 (96.85%), Query Frame = 0


Query: 53  MEPAGLFQSSMRFFSDQELCYADILTPQEVVARIQVAVLNFLRILSSPTPAISNLPLIDR 112
           MEPAGLF+SSMRFFSDQELCYADILTPQEVVARIQ+AVLNFLRIL+S +PAISNLPLIDR
Sbjct: 1   MEPAGLFESSMRFFSDQELCYADILTPQEVVARIQIAVLNFLRILNSSSPAISNLPLIDR 60

Query: 113 RSSNSRVNQGILMDASWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILIQDKRVTQ 172
           RSSNSRV+QGIL D SWIFLSHSFCTRSLMR NA+KAFVRVWKLMEMCSQILIQDKRVTQ
Sbjct: 61  RSSNSRVSQGILTDDSWIFLSHSFCTRSLMRPNASKAFVRVWKLMEMCSQILIQDKRVTQ 120

Query: 173 RELFYKLLCNSPAYFPTQLHVNRTVQDVVALLRCSRYSLGIMASSRGLVAGRLLLQAHCA 232
           RELFYKLLC+SPAYF TQLHVNRT+QDVVALL+CSRYSLGIMASSRGLVAGRLLLQAHC 
Sbjct: 121 RELFYKLLCDSPAYFSTQLHVNRTIQDVVALLQCSRYSLGIMASSRGLVAGRLLLQAHCT 180

Query: 233 AFLIDLEPEQEVVDCTACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDH 292
           AFLI LEPEQEVVDCTACGSSGY ISGDLDLL+ LTLKTDARY+IVIEKHAIFQRLA+D 
Sbjct: 181 AFLIGLEPEQEVVDCTACGSSGYPISGDLDLLKMLTLKTDARYIIVIEKHAIFQRLADDR 240

Query: 293 VFNHIPSILITAKGYPDIATRYFLHRISKTFPLLPIFGLVDWNPAGLAILCTFKYGSIGM 352
           VFNHIPSILITAKGYPD+ATRYFLH+I KTFP LP+FGLVDWNPAG+AILCTFKYGSIGM
Sbjct: 241 VFNHIPSILITAKGYPDLATRYFLHKIGKTFPHLPMFGLVDWNPAGMAILCTFKYGSIGM 300

Query: 353 GLEAYRYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSSEILQENYRQELTLM 412
           GLEAYRYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSS+ILQENYRQELTLM
Sbjct: 301 GLEAYRYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSSKILQENYRQELTLM 360

Query: 413 VERGQKAELEALYHNGFDYLE 434
           VERGQKAELEALYHNGFDYLE
Sbjct: 361 VERGQKAELEALYHNGFDYLE 381

[Close]

BLAST of Clc01G02460.1 vs. ExPASy TrEMBL
Match: A0A1S3AUC6 (meiotic recombination protein SPO11-2 OS=Cucumis melo OX=3656 GN=LOC103482788 PE=3 SV=1)

HSP 1 Score: 686.4 bits (1770), Expect = 1.0e-193
Identity = 345/381 (90.55%), Postives = 361/381 (94.75%), Query Frame = 0


Query: 53  MEPAGLFQSSMRFFSDQELCYADILTPQEVVARIQVAVLNFLRILSSPTPAISNLPLIDR 112
           MEPAGLF+SSMRFFSDQELCYADILTPQEVVARIQ+AVLNFLRIL+S +PAISNLPLIDR
Sbjct: 1   MEPAGLFESSMRFFSDQELCYADILTPQEVVARIQIAVLNFLRILNSSSPAISNLPLIDR 60

Query: 113 RSSNSRVNQGILMDASWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILIQDKRVTQ 172
           RSSNSRV+QGIL D SWIFLSHSFCTRSLMR NA+KAFVRVWKLMEMCSQILIQDKRVTQ
Sbjct: 61  RSSNSRVSQGILTDDSWIFLSHSFCTRSLMRPNASKAFVRVWKLMEMCSQILIQDKRVTQ 120

Query: 173 RELFYKLLCNSPAYFPTQLHVNRTVQDVVALLRCSRYSLGIMASSRGLVAGRLLLQAHCA 232
           RELFYKLLC+SPAYF TQLHVNRT+QDVVALL+CSRYSLGIMASSRGLVAGRLLLQ    
Sbjct: 121 RELFYKLLCDSPAYFSTQLHVNRTIQDVVALLQCSRYSLGIMASSRGLVAGRLLLQ---- 180

Query: 233 AFLIDLEPEQEVVDCTACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDH 292
                 EPEQEVVDCTACGSSGY ISGDLDLL+ LTLKTDARY+IVIEKHAIFQRLA+D 
Sbjct: 181 ------EPEQEVVDCTACGSSGYPISGDLDLLKMLTLKTDARYIIVIEKHAIFQRLADDR 240

Query: 293 VFNHIPSILITAKGYPDIATRYFLHRISKTFPLLPIFGLVDWNPAGLAILCTFKYGSIGM 352
           VFNHIPSILITAKGYPD+ATRYFLH+I KTFP LP+FGLVDWNPAGLAILCTFKYGSIGM
Sbjct: 241 VFNHIPSILITAKGYPDLATRYFLHKIGKTFPHLPMFGLVDWNPAGLAILCTFKYGSIGM 300

Query: 353 GLEAYRYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSSEILQENYRQELTLM 412
           GLEAYRYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSS+ILQENYRQELTLM
Sbjct: 301 GLEAYRYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSSKILQENYRQELTLM 360

Query: 413 VERGQKAELEALYHNGFDYLE 434
           VERGQKAELEALYHNGFDYLE
Sbjct: 361 VERGQKAELEALYHNGFDYLE 371

[Close]

BLAST of Clc01G02460.1 vs. ExPASy TrEMBL
Match: A0A6J1H3X3 (meiotic recombination protein SPO11-2 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459771 PE=3 SV=1)

HSP 1 Score: 683.7 bits (1763), Expect = 6.6e-193
Identity = 345/381 (90.55%), Postives = 358/381 (93.96%), Query Frame = 0


Query: 53  MEPAGLFQSSMRFFSDQELCYADILTPQEVVARIQVAVLNFLRILSSPTPAISNLPLIDR 112
           ME  GLF+SSMRFFSDQELCYADILTPQEV+ARIQVAVLNFLRILSS TPAISNLPLIDR
Sbjct: 1   METTGLFKSSMRFFSDQELCYADILTPQEVLARIQVAVLNFLRILSSSTPAISNLPLIDR 60

Query: 113 RSSNSRVNQGILMDASWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILIQDKRVTQ 172
            SSNSRVNQGIL D SWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQIL+Q+KRVTQ
Sbjct: 61  SSSNSRVNQGILTDESWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILLQEKRVTQ 120

Query: 173 RELFYKLLCNSPAYFPTQLHVNRTVQDVVALLRCSRYSLGIMASSRGLVAGRLLLQAHCA 232
           RELFYKL C+SPAYFPTQLHVNRT+QDVVALLRCSR+SLG+MASSRGLVAGRLLLQ    
Sbjct: 121 RELFYKLFCDSPAYFPTQLHVNRTIQDVVALLRCSRFSLGVMASSRGLVAGRLLLQ---- 180

Query: 233 AFLIDLEPEQEVVDCTACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDH 292
                 EPEQE VDC ACG+SGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAED 
Sbjct: 181 ------EPEQETVDCAACGTSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDR 240

Query: 293 VFNHIPSILITAKGYPDIATRYFLHRISKTFPLLPIFGLVDWNPAGLAILCTFKYGSIGM 352
           VFNHIPSILITAKGYPD+ATRYFLHRISKTFP LPIFGLVDWNPAGLAILCTFKYGSIGM
Sbjct: 241 VFNHIPSILITAKGYPDMATRYFLHRISKTFPHLPIFGLVDWNPAGLAILCTFKYGSIGM 300

Query: 353 GLEAYRYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSSEILQENYRQELTLM 412
           GLEAYRYACNVKWLG+RGDD+QLIPQESLV LKPRDLQIAKSLMSSEILQENYR+ELTLM
Sbjct: 301 GLEAYRYACNVKWLGMRGDDVQLIPQESLVSLKPRDLQIAKSLMSSEILQENYREELTLM 360

Query: 413 VERGQKAELEALYHNGFDYLE 434
           VE GQKAELEALYHNGFDYLE
Sbjct: 361 VEGGQKAELEALYHNGFDYLE 371

[Close]

BLAST of Clc01G02460.1 vs. ExPASy TrEMBL
Match: A0A0A0KNU2 (TP6A_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G152220 PE=3 SV=1)

HSP 1 Score: 677.9 bits (1748), Expect = 3.6e-191
Identity = 342/381 (89.76%), Postives = 358/381 (93.96%), Query Frame = 0


Query: 53  MEPAGLFQSSMRFFSDQELCYADILTPQEVVARIQVAVLNFLRILSSPTPAISNLPLIDR 112
           MEPAGLF+SSMRFFSDQELCYADILTPQEVVARIQVAVLNFLRIL+S +PAISNLPLIDR
Sbjct: 1   MEPAGLFESSMRFFSDQELCYADILTPQEVVARIQVAVLNFLRILNSSSPAISNLPLIDR 60

Query: 113 RSSNSRVNQGILMDASWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILIQDKRVTQ 172
           RSSNSRV+QGIL D SWIFLSHSFCTRSLMR NA+KAFVRVWKLMEMCSQILIQDK+VTQ
Sbjct: 61  RSSNSRVSQGILTDDSWIFLSHSFCTRSLMRPNASKAFVRVWKLMEMCSQILIQDKKVTQ 120

Query: 173 RELFYKLLCNSPAYFPTQLHVNRTVQDVVALLRCSRYSLGIMASSRGLVAGRLLLQAHCA 232
           RELFYKLLC+SP YF TQLHVNRT+QDVVALL+CSRYSLGIMASSRGLVAGRLLLQ    
Sbjct: 121 RELFYKLLCDSPVYFSTQLHVNRTIQDVVALLQCSRYSLGIMASSRGLVAGRLLLQ---- 180

Query: 233 AFLIDLEPEQEVVDCTACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDH 292
                 EPEQEVVDCTACGSSGY ISGDLDLLQ LTLKTDARY+IVIEKHAIFQRLA+D 
Sbjct: 181 ------EPEQEVVDCTACGSSGYPISGDLDLLQTLTLKTDARYIIVIEKHAIFQRLADDR 240

Query: 293 VFNHIPSILITAKGYPDIATRYFLHRISKTFPLLPIFGLVDWNPAGLAILCTFKYGSIGM 352
           VFN IPSILITAKGYPD+ATRYFLH+I KTF  LP+FGLVDWNPAGLAILCTFKYGSIGM
Sbjct: 241 VFNRIPSILITAKGYPDLATRYFLHKICKTFSHLPMFGLVDWNPAGLAILCTFKYGSIGM 300

Query: 353 GLEAYRYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSSEILQENYRQELTLM 412
           GLEAYRYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSL+SS+ILQENYRQELTLM
Sbjct: 301 GLEAYRYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLLSSKILQENYRQELTLM 360

Query: 413 VERGQKAELEALYHNGFDYLE 434
           VERGQKAELEALYHNGFDYLE
Sbjct: 361 VERGQKAELEALYHNGFDYLE 371

[Close]

BLAST of Clc01G02460.1 vs. TAIR 10
Match: AT1G63990.1 (sporulation 11-2 )

HSP 1 Score: 541.2 bits (1393), Expect = 1.0e-153
Identity = 272/379 (71.77%), Postives = 320/379 (84.43%), Query Frame = 0


Query: 54  EPAGLFQSSMRFFSDQELCYADILTPQEVVARIQVAVLNFLRILSSPTPAISNLPLIDRR 113
           E +GL  SSM+FFSDQ L YADIL P E  ARI+V+VLN LRIL+SP PAIS+L LI+R+
Sbjct: 3   ESSGL--SSMKFFSDQHLSYADILLPHEARARIEVSVLNLLRILNSPDPAISDLSLINRK 62

Query: 114 SSNSRVNQGILMDASWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILIQDKRVTQR 173
            SNS +N+GIL D S+IFLS SF   SL  A  AKAFVRVWK+ME+C QIL+Q+KRVTQR
Sbjct: 63  RSNSCINKGILTDVSYIFLSTSFTKSSLTNAKTAKAFVRVWKVMEICFQILLQEKRVTQR 122

Query: 174 ELFYKLLCNSPAYFPTQLHVNRTVQDVVALLRCSRYSLGIMASSRGLVAGRLLLQAHCAA 233
           ELFYKLLC+SP YF +Q+ VNR+VQDVVALLRCSRYSLGIMASSRGLVAGRL LQ     
Sbjct: 123 ELFYKLLCDSPDYFSSQIEVNRSVQDVVALLRCSRYSLGIMASSRGLVAGRLFLQ----- 182

Query: 234 FLIDLEPEQEVVDCTACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDHV 293
                EP +E VDC+ACGSSG+AI+GDL+LL    ++TDARY+I++EKHAIF RL ED V
Sbjct: 183 -----EPGKEAVDCSACGSSGFAITGDLNLLDNTIMRTDARYIIIVEKHAIFHRLVEDRV 242

Query: 294 FNHIPSILITAKGYPDIATRYFLHRISKTFPLLPIFGLVDWNPAGLAILCTFKYGSIGMG 353
           FNHIP + ITAKGYPDIATR+FLHR+S TFP LPI  LVDWNPAGLAILCTFK+GSIGMG
Sbjct: 243 FNHIPCVFITAKGYPDIATRFFLHRMSTTFPDLPILVLVDWNPAGLAILCTFKFGSIGMG 302

Query: 354 LEAYRYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSSEILQENYRQELTLMV 413
           LEAYRYACNVKW+G+RGDDL LIP+ESLVPLKP+D QIAKSL+SS+ILQENY +EL+LMV
Sbjct: 303 LEAYRYACNVKWIGLRGDDLNLIPEESLVPLKPKDSQIAKSLLSSKILQENYIEELSLMV 362

Query: 414 ERGQKAELEALYHNGFDYL 433
           + G++AE+EALY +G++YL
Sbjct: 363 QTGKRAEIEALYCHGYNYL 369

[Close]

BLAST of Clc01G02460.1 vs. TAIR 10
Match: AT5G02820.1 (Spo11/DNA topoisomerase VI, subunit A protein )

HSP 1 Score: 172.6 bits (436), Expect = 9.5e-43
Identity = 101/327 (30.89%), Postives = 175/327 (53.52%), Query Frame = 0


Query: 115 SNSRVNQGILMDASWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILIQDKRVTQRE 174
           S +  NQ  + +   I L      R     ++ +      +++ +  Q+ +++  VT+R+
Sbjct: 108 SRAASNQLYVPELDRIVLKDKSTLRPFASVSSVRKTTITTRILALIHQLCLRNIHVTKRD 167

Query: 175 LFYKLLCNSPAYFPTQLHVNRTVQDVVALLRCSRYSLGIMASSRGLVAGRLLLQAHCAAF 234
           LFY         F  Q   +  + DV  +L C+R SL ++A+ +G+V GRL+        
Sbjct: 168 LFY----TDVKLFQDQTQSDAVLDDVSCMLGCTRSSLNVIAAEKGVVVGRLI-------- 227

Query: 235 LIDLEPEQEVVDCTACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDHVF 294
                   +++DCT  G  G AI  ++D +    +++DA +++++EK A + RLAED  +
Sbjct: 228 ---FSDNGDMIDCTKMGMGGKAIPPNIDRVG--DMQSDAMFILLVEKDAAYMRLAEDRFY 287

Query: 295 NHIPSILITAKGYPDIATRYFLHRISKTFPLLPIFGLVDWNPAGLAILCTFKYGSIGMGL 354
           N  P I++TAKG PD+ATR FL ++      LP+  LVD +P GL IL  +  GS  M  
Sbjct: 288 NRFPCIIVTAKGQPDVATRLFLRKMKMELK-LPVLALVDSDPYGLKILSVYGCGSKNMSY 347

Query: 355 EAYRYAC-NVKWLGVRGDDLQ--LIPQESLVPLKPRDLQIAKSLMSSEILQEN--YRQEL 414
           ++      ++KWLG+R  DL    IP++  +P+  +D++  K ++  + +++N  + +EL
Sbjct: 348 DSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDMLEEDFVKKNPGWVEEL 407

Query: 415 TLMVERGQKAELEALYHNGFDYLENCF 437
            LMV+  QKAE++AL   GF YL   +
Sbjct: 408 NLMVKTKQKAEIQALSSFGFQYLSEVY 416

[Close]

BLAST of Clc01G02460.1 vs. TAIR 10
Match: AT5G41560.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin ligase, Det1/DDB1-complexing (InterPro:IPR018276); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 133.7 bits (335), Expect = 4.9e-31
Identity = 66/97 (68.04%), Postives = 77/97 (79.38%), Query Frame = 0


Query: 482 MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIR 541
           M S+LGDLPS+DPHNFSQ RPSDPS PSKM+P TY PTH+RTLPPPDQVI TE KNILIR
Sbjct: 1   MASILGDLPSFDPHNFSQHRPSDPSNPSKMVPTTYRPTHNRTLPPPDQVITTEVKNILIR 60

Query: 542 HIYQHTEEKSRTKRPAAEHPVPEHGSKQPRASTTNTS 579
             YQ  EEK R KRPA +H   EH +K  RA+++++S
Sbjct: 61  SFYQRAEEKLRPKRPATDHLAAEHVNKHFRAASSSSS 97

[Close]

BLAST of Clc01G02460.1 vs. TAIR 10
Match: AT3G13170.1 (Spo11/DNA topoisomerase VI, subunit A protein )

HSP 1 Score: 131.7 bits (330), Expect = 1.9e-30
Identity = 86/289 (29.76%), Postives = 157/289 (54.33%), Query Frame = 0


Query: 155 KLMEMCSQILIQDKRVTQRELFYKLLCNSPAYFPTQLHVNRTVQDVVALLRCSRYSLGIM 214
           +++ +  Q+L +++  ++R+++Y      P+ F  Q  V+R + D+  L +CSRY+L ++
Sbjct: 81  RVLLIVQQLLQENRHASKRDIYYM----HPSAFKAQSIVDRAIGDICILFQCSRYNLNVV 140

Query: 215 ASSRGLVAGRLLLQAHCAAFLIDLEPEQEVVDCTACGSSGYAISGDLDLLQKLTLKTDAR 274
           +   GLV G L  +     F           DC    ++ Y +   ++ ++ +   + A 
Sbjct: 141 SVGNGLVMGWLKFREAGRKF-----------DCLNSLNTAYPVPVLVEEVEDIV--SLAE 200

Query: 275 YVIVIEKHAIFQRLAEDHVFNHIPSILITAKGYPDIATRYFLHRISKTFPLLPIFGLVDW 334
           Y++V+EK  +FQRLA D        I+IT +GYPD++TR FL  + +    LP+  LVD 
Sbjct: 201 YILVVEKETVFQRLANDMFCKTNRCIVITGRGYPDVSTRRFLRLLMEKLH-LPVHCLVDC 260

Query: 335 NPAGLAILCTFKYGSIGMG--LEAYRYACNVKWLGVRGDDLQL--IPQESLVPLKPRDLQ 394
           +P G  IL T+++GS+ M   +E+ R A ++KWLG    D ++  +P++ L+PL   D +
Sbjct: 261 DPYGFEILATYRFGSMQMAYDIESLR-APDMKWLGAFPSDSEVYSVPKQCLLPLTEEDKK 320

Query: 395 IAKSLMSSEILQE---NYRQELTLMVERGQKAELEALYHNGFDYLENCF 437
             ++++    L+     +R EL  M++RG K E+EAL  +   +L   +
Sbjct: 321 RTEAMLLRCYLKREMPQWRLELETMLKRGVKFEIEALSVHSLSFLSEVY 350

The following BLAST results are available for this feature:

BLAST of Clc01G02460.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYG57557.1	2.9e-203	70.27	hypothetical protein ES288_D08G152200v1 [Gossypium darwinii]	[more]
KAG4134081.1	8.5e-203	70.46	hypothetical protein ERO13_D08G134500v2 [Gossypium hirsutum]	[more]
KAA0042721.1	1.8e-200	92.39	meiotic recombination protein SPO11-2 [Cucumis melo var. makuwa]	[more]
KAG7036015.1	1.3e-195	91.34	Meiotic recombination protein SPO11-2 [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_038906472.1	1.1e-194	91.60	meiotic recombination protein SPO11-2 isoform X1 [Benincasa hispida] >XP_0389064...	[more]

BLAST of Clc01G02460.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M4A1	1.4e-152	71.77	Meiotic recombination protein SPO11-2 OS=Arabidopsis thaliana OX=3702 GN=SPO11-2...	[more]
Q5ZPI9	3.7e-132	63.87	Meiotic recombination protein SPO11-2 OS=Oryza sativa subsp. indica OX=39946 GN=...	[more]
Q6ZD95	8.2e-132	63.61	Meiotic recombination protein SPO11-2 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q9LZ03	1.3e-41	30.89	DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana OX=3702 GN=TOP6A PE=1 SV=1	[more]
A2XFC1	8.7e-41	32.72	DNA topoisomerase 6 subunit A3 OS=Oryza sativa subsp. indica OX=39946 GN=TOP6A3 ...	[more]

BLAST of Clc01G02460.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D2BK52	1.4e-203	70.27	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D08G152200v1 PE=...	[more]
A0A5A7TMD5	8.6e-201	92.39	Meiotic recombination protein SPO11-2 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3AUC6	1.0e-193	90.55	meiotic recombination protein SPO11-2 OS=Cucumis melo OX=3656 GN=LOC103482788 PE...	[more]
A0A6J1H3X3	6.6e-193	90.55	meiotic recombination protein SPO11-2 isoform X1 OS=Cucurbita moschata OX=3662 G...	[more]
A0A0A0KNU2	3.6e-191	89.76	TP6A_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G152220 PE=3...	[more]

BLAST of Clc01G02460.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G63990.1	1.0e-153	71.77	sporulation 11-2	[more]
AT5G02820.1	9.5e-43	30.89	Spo11/DNA topoisomerase VI, subunit A protein	[more]
AT5G41560.1	4.9e-31	68.04	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT3G13170.1	1.9e-30	29.76	Spo11/DNA topoisomerase VI, subunit A protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002815	Spo11/DNA topoisomerase VI subunit A	PRINTS	PR01550	TOP6AFAMILY	coord: 276..293 score: 44.1 coord: 333..349 score: 48.53 coord: 190..207 score: 22.92 coord: 208..223 score: 45.31 coord: 300..321 score: 42.33
IPR002815	Spo11/DNA topoisomerase VI subunit A	PANTHER	PTHR10848	MEIOTIC RECOMBINATION PROTEIN SPO11	coord: 68..434
IPR013049	Spo11/DNA topoisomerase VI, subunit A, N-terminal	PFAM	PF04406	TP6A_N	coord: 148..213 e-value: 8.2E-15 score: 54.6
IPR018276	DET1- and DDB1-associated protein 1, N-terminal	PFAM	PF10172	DDA1	coord: 484..549 e-value: 1.1E-27 score: 96.0
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 70..216 e-value: 1.6E-21 score: 78.6
None	No IPR available	GENE3D	3.40.1360.10		coord: 218..440 e-value: 2.5E-59 score: 202.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 545..579
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 545..566
None	No IPR available	PANTHER	PTHR10848:SF0	MEIOTIC RECOMBINATION PROTEIN SPO11	coord: 68..434
IPR034136	Topoisomerase 6 subunit A/Spo11, TOPRIM domain	CDD	cd00223	TOPRIM_TopoIIB_SPO	coord: 274..431 e-value: 6.51143E-60 score: 194.396
IPR036078	Spo11/DNA topoisomerase VI subunit A superfamily	SUPERFAMILY	56726	DNA topoisomerase IV, alpha subunit	coord: 147..433

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc01G02460	Clc01G02460	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc01G02460.1-exon	Clc01G02460.1-exon-ClcChr01:2172125..2172207	exon
Clc01G02460.1-exon	Clc01G02460.1-exon-ClcChr01:2173886..2173917	exon
Clc01G02460.1-exon	Clc01G02460.1-exon-ClcChr01:2174074..2174201	exon
Clc01G02460.1-exon	Clc01G02460.1-exon-ClcChr01:2174281..2174364	exon
Clc01G02460.1-exon	Clc01G02460.1-exon-ClcChr01:2174461..2174590	exon
Clc01G02460.1-exon	Clc01G02460.1-exon-ClcChr01:2174697..2174834	exon
Clc01G02460.1-exon	Clc01G02460.1-exon-ClcChr01:2174924..2175042	exon
Clc01G02460.1-exon	Clc01G02460.1-exon-ClcChr01:2175273..2175401	exon
Clc01G02460.1-exon	Clc01G02460.1-exon-ClcChr01:2175518..2175612	exon
Clc01G02460.1-exon	Clc01G02460.1-exon-ClcChr01:2175699..2175761	exon
Clc01G02460.1-exon	Clc01G02460.1-exon-ClcChr01:2175835..2175911	exon
Clc01G02460.1-exon	Clc01G02460.1-exon-ClcChr01:2175990..2176117	exon
Clc01G02460.1-exon	Clc01G02460.1-exon-ClcChr01:2176202..2176296	exon
Clc01G02460.1-exon	Clc01G02460.1-exon-ClcChr01:2176497..2176522	exon
Clc01G02460.1-exon	Clc01G02460.1-exon-ClcChr01:2176656..2176761	exon
Clc01G02460.1-exon	Clc01G02460.1-exon-ClcChr01:2179222..2179315	exon
Clc01G02460.1-exon	Clc01G02460.1-exon-ClcChr01:2180879..2180939	exon
Clc01G02460.1-exon	Clc01G02460.1-exon-ClcChr01:2181087..2181148	exon
Clc01G02460.1-exon	Clc01G02460.1-exon-ClcChr01:2181254..2181343	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc01G02460.1-cds	Clc01G02460.1-cds-ClcChr01:2172125..2172207	CDS
Clc01G02460.1-cds	Clc01G02460.1-cds-ClcChr01:2173886..2173917	CDS
Clc01G02460.1-cds	Clc01G02460.1-cds-ClcChr01:2174074..2174201	CDS
Clc01G02460.1-cds	Clc01G02460.1-cds-ClcChr01:2174281..2174364	CDS
Clc01G02460.1-cds	Clc01G02460.1-cds-ClcChr01:2174461..2174590	CDS
Clc01G02460.1-cds	Clc01G02460.1-cds-ClcChr01:2174697..2174834	CDS
Clc01G02460.1-cds	Clc01G02460.1-cds-ClcChr01:2174924..2175042	CDS
Clc01G02460.1-cds	Clc01G02460.1-cds-ClcChr01:2175273..2175401	CDS
Clc01G02460.1-cds	Clc01G02460.1-cds-ClcChr01:2175518..2175612	CDS
Clc01G02460.1-cds	Clc01G02460.1-cds-ClcChr01:2175699..2175761	CDS
Clc01G02460.1-cds	Clc01G02460.1-cds-ClcChr01:2175835..2175911	CDS
Clc01G02460.1-cds	Clc01G02460.1-cds-ClcChr01:2175990..2176117	CDS
Clc01G02460.1-cds	Clc01G02460.1-cds-ClcChr01:2176202..2176296	CDS
Clc01G02460.1-cds	Clc01G02460.1-cds-ClcChr01:2176497..2176522	CDS
Clc01G02460.1-cds	Clc01G02460.1-cds-ClcChr01:2176656..2176761	CDS
Clc01G02460.1-cds	Clc01G02460.1-cds-ClcChr01:2179222..2179315	CDS
Clc01G02460.1-cds	Clc01G02460.1-cds-ClcChr01:2180879..2180939	CDS
Clc01G02460.1-cds	Clc01G02460.1-cds-ClcChr01:2181087..2181148	CDS
Clc01G02460.1-cds	Clc01G02460.1-cds-ClcChr01:2181254..2181343	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc01G02460.1	Clc01G02460.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:0042138	meiotic DNA double-strand break formation
biological_process	GO:0051026	chiasma assembly
biological_process	GO:0009553	embryo sac development
biological_process	GO:0000706	meiotic DNA double-strand break processing
biological_process	GO:0009555	pollen development
biological_process	GO:0048316	seed development
cellular_component	GO:0005694	chromosome
cellular_component	GO:0000228	nuclear chromosome
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0046872	metal ion binding