Clc00G02480.1 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc00G02480.1
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	30S ribosomal protein S2, chloroplastic
Location	ClcCtg023: 6439 .. 7113 (-)
Sequence length	675
RNA-Seq Expression	Clc00G02480.1
Synteny	Clc00G02480.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAACGTAAAGGTATTCATATTATCAATCTTACTAGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTTGATGCAGCAAGTAGGGGAAAACAATTCTTAATTGTTGGTACCAAAAATAAAGCAGCGGATTCAGTAGCCCGGGCAGCAACAAGGGCTCGGTGTCATTATGTTAATAAAAAATGGCTGGGGGGGATGTTAACAAATTGGTCTACTACAGAAACGAGACTTCATAAGTTCAGGGACTTGAGAACGGAACAAAAGACGGGGGGACTCAACCGTCTTCCGAAAAGGGATGCCGCTATGTTGAAGAGACAATTATCTCACTTGCAAACATATCTGGGCGGTATTAAATATATGACGGGGTTACCCGATATTGTAATAATCGTTGATCAGCAAGAAGAATATCGGGCTCTTCAAGAATGTATCACGTTAGGAATTCCAACTATTTGTTTAATTGATACAAATTGTGACCCCGATCTCGCAGATATTTCGATTCCAGCGAATGATGATGCTATAGCTTCAATCCGATTAATTCTTAACAAATTAGTATTTGCAATTTCTGAGGGTCGTTCTAGCTCTATACGAAATTCTTGA

mRNA sequence

ATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAACGTAAAGGTATTCATATTATCAATCTTACTAGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTTGATGCAGCAAGTAGGGGAAAACAATTCTTAATTGTTGGTACCAAAAATAAAGCAGCGGATTCAGTAGCCCGGGCAGCAACAAGGGCTCGGTGTCATTATGTTAATAAAAAATGGCTGGGGGGGATGTTAACAAATTGGTCTACTACAGAAACGAGACTTCATAAGTTCAGGGACTTGAGAACGGAACAAAAGACGGGGGGACTCAACCGTCTTCCGAAAAGGGATGCCGCTATGTTGAAGAGACAATTATCTCACTTGCAAACATATCTGGGCGGTATTAAATATATGACGGGGTTACCCGATATTGTAATAATCGTTGATCAGCAAGAAGAATATCGGGCTCTTCAAGAATGTATCACGTTAGGAATTCCAACTATTTGTTTAATTGATACAAATTGTGACCCCGATCTCGCAGATATTTCGATTCCAGCGAATGATGATGCTATAGCTTCAATCCGATTAATTCTTAACAAATTAGTATTTGCAATTTCTGAGGGTCGTTCTAGCTCTATACGAAATTCTTGA

Coding sequence (CDS)

ATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAACGTAAAGGTATTCATATTATCAATCTTACTAGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTTGATGCAGCAAGTAGGGGAAAACAATTCTTAATTGTTGGTACCAAAAATAAAGCAGCGGATTCAGTAGCCCGGGCAGCAACAAGGGCTCGGTGTCATTATGTTAATAAAAAATGGCTGGGGGGGATGTTAACAAATTGGTCTACTACAGAAACGAGACTTCATAAGTTCAGGGACTTGAGAACGGAACAAAAGACGGGGGGACTCAACCGTCTTCCGAAAAGGGATGCCGCTATGTTGAAGAGACAATTATCTCACTTGCAAACATATCTGGGCGGTATTAAATATATGACGGGGTTACCCGATATTGTAATAATCGTTGATCAGCAAGAAGAATATCGGGCTCTTCAAGAATGTATCACGTTAGGAATTCCAACTATTTGTTTAATTGATACAAATTGTGACCCCGATCTCGCAGATATTTCGATTCCAGCGAATGATGATGCTATAGCTTCAATCCGATTAATTCTTAACAAATTAGTATTTGCAATTTCTGAGGGTCGTTCTAGCTCTATACGAAATTCTTGA

Protein sequence

MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS

Homology

[Close]

BLAST of Clc00G02480.1 vs. NCBI nr
Match: YP_009317375.1 (ribosomal protein S2 [Coccinia grandis] >YP_009325978.1 ribosomal protein S2 [Citrullus lanatus] >YP_009348020.1 ribosomal protein S2 [Citrullus mucosospermus] >YP_009420783.1 ribosomal protein S2 [Citrullus colocynthis] >YP_009431546.1 ribosomal protein S2 [Citrullus amarus] >YP_009431631.1 ribosomal protein S2 [Citrullus rehmii] >YP_009447439.1 ribosomal protein S2 [Cucurbita maxima] >YP_009456135.1 ribosomal protein S2 [Lagenaria siceraria] >YP_009505069.1 ribosomal protein S2 [Cucurbita pepo] >YP_010131083.1 ribosomal protein S2 [Benincasa hispida] >ALO22031.1 ribosomal protein S2 [Cucurbita ecuadorensis] >ALO22147.1 ribosomal protein S2 [Cucurbita ficifolia] >ALO22201.1 ribosomal protein S2 [Cucurbita foetidissima] >ALO22335.1 ribosomal protein S2 [Cucurbita maxima subsp. andreana] >ALO22560.1 ribosomal protein S2 [Cucurbita pepo subsp. fraterna] >ALO22610.1 ribosomal protein S2 [Cucurbita pepo subsp. ovifera] >ALO22698.1 ribosomal protein S2 [Cucurbita pepo var. ozarkana] >ALO22796.1 ribosomal protein S2 [Cucurbita pepo subsp. pepo] >ALO22851.1 ribosomal protein S2 [Cucurbita pepo var. texana] >ALO22893.1 ribosomal protein S2 [Cucurbita pedatifolia] >APW82450.1 ribosomal protein S2 [Citrullus lanatus subsp. vulgaris] >QNM38520.1 ribosomal protein S2 [Lagenaria siceraria var. microcarpa] >QZL38670.1 ribosomal protein S2 [Citrullus ecirrhosus])

HSP 1 Score: 451.1 bits (1159), Expect = 5.8e-123
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR 120
           IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR
Sbjct: 73  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR 132

Query: 121 LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID 180
           LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID
Sbjct: 133 LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID 192

Query: 181 TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 225
           TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 193 TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]

BLAST of Clc00G02480.1 vs. NCBI nr
Match: YP_009751895.1 (ribosomal protein S2 [Cyclanthera pedata] >YP_009945406.1 ribosomal protein S2 [Sechium edule] >QIT04122.1 ribosomal protein S2 [Sechium edule] >QIT04713.1 ribosomal protein S2 [Cyclanthera pedata] >QOE55936.1 ribosomal protein S2 [Sechium edule] >QWQ50142.1 ribosomal protein S2 [Cyclanthera pedata])

HSP 1 Score: 451.1 bits (1159), Expect = 5.8e-123
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR 120
           IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR
Sbjct: 73  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR 132

Query: 121 LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID 180
           LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID
Sbjct: 133 LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID 192

Query: 181 TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 225
           TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 193 TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]

BLAST of Clc00G02480.1 vs. NCBI nr
Match: YP_009753078.1 (ribosomal protein S2 [Corallocarpus boehmii] >QIT06150.1 ribosomal protein S2 [Corallocarpus boehmii])

HSP 1 Score: 449.9 bits (1156), Expect = 1.3e-122
Identity = 223/224 (99.55%), Postives = 224/224 (100.00%), Query Frame = 0


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR 120
           IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR
Sbjct: 73  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR 132

Query: 121 LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID 180
           LPKRDAAM+KRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID
Sbjct: 133 LPKRDAAMVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID 192

Query: 181 TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 225
           TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 193 TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]

BLAST of Clc00G02480.1 vs. NCBI nr
Match: YP_009752316.1 (ribosomal protein S2 [Bryonia marmorata] >QIT04290.1 ribosomal protein S2 [Bryonia marmorata])

HSP 1 Score: 449.5 bits (1155), Expect = 1.7e-122
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR 120
           IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR
Sbjct: 73  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR 132

Query: 121 LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID 180
           LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID
Sbjct: 133 LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID 192

Query: 181 TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRN 224
           TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRN
Sbjct: 193 TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRN 235

[Close]

BLAST of Clc00G02480.1 vs. NCBI nr
Match: YP_009751979.1 (ribosomal protein S2 [Cionosicys macranthus] >QIT05220.1 ribosomal protein S2 [Cionosicys macranthus] >QZL38582.1 ribosomal protein S2 [Citrullus naudinianus])

HSP 1 Score: 449.1 bits (1154), Expect = 2.2e-122
Identity = 223/224 (99.55%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR 120
           IVGT NKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR
Sbjct: 73  IVGTNNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR 132

Query: 121 LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID 180
           LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID
Sbjct: 133 LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID 192

Query: 181 TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 225
           TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 193 TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]

BLAST of Clc00G02480.1 vs. ExPASy Swiss-Prot
Match: Q4VZP4 (30S ribosomal protein S2, chloroplastic OS=Cucumis sativus OX=3659 GN=rps2 PE=3 SV=1)

HSP 1 Score: 446.8 bits (1148), Expect = 1.4e-124
Identity = 221/224 (98.66%), Postives = 222/224 (99.11%), Query Frame = 0


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAA+RGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAATRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR 120
           IVGTKNKAADSVARAATR RCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR
Sbjct: 73  IVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR 132

Query: 121 LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID 180
           LPKRDAAM KRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID
Sbjct: 133 LPKRDAAMFKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID 192

Query: 181 TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 225
           TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 193 TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]

BLAST of Clc00G02480.1 vs. ExPASy Swiss-Prot
Match: Q49L09 (30S ribosomal protein S2, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rps2 PE=3 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 8.1e-120
Identity = 214/223 (95.96%), Postives = 216/223 (96.86%), Query Frame = 0


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLT+TARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTKTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR 120
           IVGTKNKAADSVARAA RARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQK G LNR
Sbjct: 73  IVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKAGRLNR 132

Query: 121 LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID 180
           LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY AL+ECITLGIPTICLID
Sbjct: 133 LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLID 192

Query: 181 TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRN 224
           TNCDPDLADISIPANDDAIASIRLILNKLVFAI EGRSS IRN
Sbjct: 193 TNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIRN 235

[Close]

BLAST of Clc00G02480.1 vs. ExPASy Swiss-Prot
Match: Q0ZJ31 (30S ribosomal protein S2, chloroplastic OS=Vitis vinifera OX=29760 GN=rps2 PE=3 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 1.1e-119
Identity = 214/223 (95.96%), Postives = 216/223 (96.86%), Query Frame = 0


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLTRTARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR 120
           IVGTKNKAADSVARAA +ARCHYVNKKWLGGM TNWSTTETRLHKFRDLRTEQKTG LNR
Sbjct: 73  IVGTKNKAADSVARAAIKARCHYVNKKWLGGMSTNWSTTETRLHKFRDLRTEQKTGRLNR 132

Query: 121 LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID 180
           LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY AL+ECITLGIPTICLID
Sbjct: 133 LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLID 192

Query: 181 TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRN 224
           TNCDPDLADISIPANDDAIASIRLILNKLVFAI EGRSS IRN
Sbjct: 193 TNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIRN 235

[Close]

BLAST of Clc00G02480.1 vs. ExPASy Swiss-Prot
Match: B1A924 (30S ribosomal protein S2, chloroplastic OS=Carica papaya OX=3649 GN=rps2 PE=3 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 2.0e-118
Identity = 212/224 (94.64%), Postives = 216/224 (96.43%), Query Frame = 0


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLTRTARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR 120
           IVGTKNKAADSVARAA RARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTG LNR
Sbjct: 73  IVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGRLNR 132

Query: 121 LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID 180
           LPKRDAA+LKRQLSHLQTYLGGIKYMTGLPDIVII+DQQEEY AL+ECITLGIPTI LID
Sbjct: 133 LPKRDAAVLKRQLSHLQTYLGGIKYMTGLPDIVIIIDQQEEYTALRECITLGIPTISLID 192

Query: 181 TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 225
           TNCDPDLADISIPANDDAIASIRLILNKLVFAI EG SS I+NS
Sbjct: 193 TNCDPDLADISIPANDDAIASIRLILNKLVFAICEGHSSYIQNS 236

[Close]

BLAST of Clc00G02480.1 vs. ExPASy Swiss-Prot
Match: Q1KXW9 (30S ribosomal protein S2, chloroplastic OS=Helianthus annuus OX=4232 GN=rps2 PE=3 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 2.6e-118
Identity = 211/223 (94.62%), Postives = 214/223 (95.96%), Query Frame = 0


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNP+MAPYISAKRKGIHI NLTRTARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPKMAPYISAKRKGIHITNLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR 120
           IVGTKNK ADSVA AA RARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGL+R
Sbjct: 73  IVGTKNKEADSVAWAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLSR 132

Query: 121 LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID 180
           LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQ EEY ALQECITLGIPTICLID
Sbjct: 133 LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQHEEYTALQECITLGIPTICLID 192

Query: 181 TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRN 224
           TNCDPDLADISIPANDDAI+SIRLILNKLVFAI EGRS  IRN
Sbjct: 193 TNCDPDLADISIPANDDAISSIRLILNKLVFAICEGRSGYIRN 235

[Close]

BLAST of Clc00G02480.1 vs. ExPASy TrEMBL
Match: A0A1P8LE54 (Ribosomal protein S2 OS=Citrullus mucosospermus OX=519315 GN=rps2 PE=3 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 2.8e-123
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR 120
           IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR
Sbjct: 73  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR 132

Query: 121 LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID 180
           LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID
Sbjct: 133 LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID 192

Query: 181 TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 225
           TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 193 TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]

BLAST of Clc00G02480.1 vs. ExPASy TrEMBL
Match: A0A2Z2CQF0 (30S ribosomal protein S2, chloroplastic OS=Coccinia grandis OX=387127 GN=rps2 PE=3 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 2.8e-123
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR 120
           IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR
Sbjct: 73  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR 132

Query: 121 LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID 180
           LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID
Sbjct: 133 LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID 192

Query: 181 TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 225
           TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 193 TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]

BLAST of Clc00G02480.1 vs. ExPASy TrEMBL
Match: X2F5D2 (30S ribosomal protein S2, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rps2 PE=3 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 2.8e-123
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR 120
           IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR
Sbjct: 73  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR 132

Query: 121 LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID 180
           LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID
Sbjct: 133 LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID 192

Query: 181 TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 225
           TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 193 TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]

BLAST of Clc00G02480.1 vs. ExPASy TrEMBL
Match: A0A1P8LEM9 (Ribosomal protein S2 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rps2 PE=3 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 2.8e-123
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR 120
           IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR
Sbjct: 73  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR 132

Query: 121 LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID 180
           LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID
Sbjct: 133 LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID 192

Query: 181 TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 225
           TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 193 TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]

BLAST of Clc00G02480.1 vs. ExPASy TrEMBL
Match: A0A7T3QNI8 (Ribosomal protein S2 OS=Benincasa hispida OX=102211 GN=rps2 PE=4 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 2.8e-123
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR 120
           IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR
Sbjct: 73  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR 132

Query: 121 LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID 180
           LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID
Sbjct: 133 LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID 192

Query: 181 TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 225
           TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 193 TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]

BLAST of Clc00G02480.1 vs. TAIR 10
Match: ATCG00160.1 (ribosomal protein S2 )

HSP 1 Score: 412.5 bits (1059), Expect = 2.1e-115
Identity = 205/224 (91.52%), Postives = 212/224 (94.64%), Query Frame = 0


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MM AGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMRAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR 120
           IVGTKNKAAD V+RAA RARCHYVNKKWLGGMLTNWSTTE RLHKFRDLRTEQKT G NR
Sbjct: 73  IVGTKNKAADLVSRAAIRARCHYVNKKWLGGMLTNWSTTEKRLHKFRDLRTEQKTEGFNR 132

Query: 121 LPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLID 180
           LPKRDAA+LKRQLS L+TYLGGIKYMTGLPDIVII+DQQEEY AL+ECITLGIPTI LID
Sbjct: 133 LPKRDAAVLKRQLSRLETYLGGIKYMTGLPDIVIILDQQEEYTALRECITLGIPTISLID 192

Query: 181 TNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 225
           TNC+PDLADISIPANDDAIASIR ILNKLVFAI EGRSS I+NS
Sbjct: 193 TNCNPDLADISIPANDDAIASIRFILNKLVFAICEGRSSYIQNS 236

The following BLAST results are available for this feature:

BLAST of Clc00G02480.1 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009317375.1	5.8e-123	100.00	ribosomal protein S2 [Coccinia grandis] >YP_009325978.1 ribosomal protein S2 [Ci...	[more]
YP_009751895.1	5.8e-123	100.00	ribosomal protein S2 [Cyclanthera pedata] >YP_009945406.1 ribosomal protein S2 [...	[more]
YP_009753078.1	1.3e-122	99.55	ribosomal protein S2 [Corallocarpus boehmii] >QIT06150.1 ribosomal protein S2 [C...	[more]
YP_009752316.1	1.7e-122	100.00	ribosomal protein S2 [Bryonia marmorata] >QIT04290.1 ribosomal protein S2 [Bryon...	[more]
YP_009751979.1	2.2e-122	99.55	ribosomal protein S2 [Cionosicys macranthus] >QIT05220.1 ribosomal protein S2 [C...	[more]

BLAST of Clc00G02480.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP4	1.4e-124	98.66	30S ribosomal protein S2, chloroplastic OS=Cucumis sativus OX=3659 GN=rps2 PE=3 ...	[more]
Q49L09	8.1e-120	95.96	30S ribosomal protein S2, chloroplastic OS=Eucalyptus globulus subsp. globulus O...	[more]
Q0ZJ31	1.1e-119	95.96	30S ribosomal protein S2, chloroplastic OS=Vitis vinifera OX=29760 GN=rps2 PE=3 ...	[more]
B1A924	2.0e-118	94.64	30S ribosomal protein S2, chloroplastic OS=Carica papaya OX=3649 GN=rps2 PE=3 SV...	[more]
Q1KXW9	2.6e-118	94.62	30S ribosomal protein S2, chloroplastic OS=Helianthus annuus OX=4232 GN=rps2 PE=...	[more]

BLAST of Clc00G02480.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1P8LE54	2.8e-123	100.00	Ribosomal protein S2 OS=Citrullus mucosospermus OX=519315 GN=rps2 PE=3 SV=1	[more]
A0A2Z2CQF0	2.8e-123	100.00	30S ribosomal protein S2, chloroplastic OS=Coccinia grandis OX=387127 GN=rps2 PE...	[more]
X2F5D2	2.8e-123	100.00	30S ribosomal protein S2, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rps2 P...	[more]
A0A1P8LEM9	2.8e-123	100.00	Ribosomal protein S2 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rps2 PE=3...	[more]
A0A7T3QNI8	2.8e-123	100.00	Ribosomal protein S2 OS=Benincasa hispida OX=102211 GN=rps2 PE=4 SV=1	[more]

BLAST of Clc00G02480.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00160.1	2.1e-115	91.52	ribosomal protein S2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001865	Ribosomal protein S2	PRINTS	PR00395	RIBOSOMALS2	coord: 167..178 score: 50.51 coord: 188..202 score: 55.28 coord: 79..96 score: 46.92 coord: 150..167 score: 39.83 coord: 29..38 score: 61.69
IPR001865	Ribosomal protein S2	PFAM	PF00318	Ribosomal_S2	coord: 1..216 e-value: 4.2E-80 score: 268.0
IPR001865	Ribosomal protein S2	CDD	cd01425	RPS2	coord: 1..215 e-value: 5.27533E-92 score: 266.37
IPR005706	Ribosomal protein S2, bacteria/mitochondria/plastid	TIGRFAM	TIGR01011	TIGR01011	coord: 1..218 e-value: 4.0E-79 score: 263.0
IPR005706	Ribosomal protein S2, bacteria/mitochondria/plastid	PANTHER	PTHR12534	30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR	coord: 1..218
IPR005706	Ribosomal protein S2, bacteria/mitochondria/plastid	HAMAP	MF_00291_B	Ribosomal_S2_B	coord: 1..217 score: 35.292294
None	No IPR available	GENE3D	1.10.287.610	Helix hairpin bin	coord: 94..144 e-value: 1.4E-25 score: 91.3
None	No IPR available	GENE3D	3.40.50.10490		coord: 1..224 e-value: 4.4E-77 score: 259.7
IPR018130	Ribosomal protein S2, conserved site	PROSITE	PS00963	RIBOSOMAL_S2_2	coord: 150..174
IPR023591	Ribosomal protein S2, flavodoxin-like domain superfamily	SUPERFAMILY	52313	Ribosomal protein S2	coord: 1..219

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc00G02480	Clc00G02480	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc00G02480.1-exon	Clc00G02480.1-exon-ClcCtg023:6439..7113	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc00G02480.1-cds	Clc00G02480.1-cds-ClcCtg023:6439..7113	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc00G02480.1	Clc00G02480.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003735	structural constituent of ribosome