Cla97C11G214140.1 (mRNA) Watermelon (97103) v2.5

Overview
NameCla97C11G214140.1
TypemRNA
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionProtein Ycf2
LocationCla97Chr11: 7670193 .. 7673011 (-)
Sequence length1188
RNA-Seq ExpressionCla97C11G214140.1
SyntenyCla97C11G214140.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAGACTTCCGTATGCGGGCACAAGCACCTGAGCAACAAGAGCCTGATATTGTGAGTAACTCTGGACCTGAGTCAAAAAAATCAGCTACACGAAGCCCTCCTGTCAGAAAAAAAAGCCCAAGGCCCGGCTATACATACATTTTCAAAAAAAAATTGTCCAAGGCTAATTCTTTTAGGTCTTTCTTCACAATAATTATGCTGATAATTATGATGCAGAAAATGCCAATTCAAATTAAATGTATTGAAAACGATGTTACTGTATGGATCGGAATTAAAAATCCCCCCAGGACCAAGAAATTACCCGACCCCGTATATCTGTAACAGTCACAATTGTATTGTTGAAACTTGCTTGAACATGAATAACGCCCTTTGGTATTCTACGCGTACTTTTACGTGAGCTAATACGTCCATTTTTACGTGAACCGATTCTTGGTATGGGTTTTGCCATATTTTACCATCTCATAAATCTAAGTCAGAGATATATGGATATATCCATTTCATGTCAAAACGGATCCTTTAATTGATTTTTATGTGTATATTGTGGGTGGCCTTTAGGGGTCCTTTTTTTATAAAGATTATCCTTGTCTTTTTTTATGTCTAGGATTGGAACAAATTACCATAATTCGTCTCCGCCTACGGATCAGGCGACATTTTTCACAAATTTTCCGAATGGAGGCCCTTATTTTCATATTTGTCATTCCTTACCTTAATTCCGAATCTACTTATTGGAAGAAAATAAGTTTCTTTAAATTTTCTATTTCGAATTGTATCCCTACAAAAAAAGAATATTGCCCGTGAAAAGACTACTTCACCTAATCCTTTGTTTCGTAGTCTCTAAATTATACGCCCTTTGGTTCTGGTTGAATCGTAACAACTTACTGAAAGTTTGACTCTCTATGACCTAGTATATGGATAAAACTATGTCGAATCCTTCCTGAAACGTAAACTAGAATTGGATCCTCATTATCTAAACAAACCCAAAACATACCATTGGTAAGTGATTCAGTAATTAAACCTTCAGAACTCCTTTTTTGTTCTTTCATTCCAGATGAAACATCTTTCAAAGTATCAATTAATGAAGGGGGAGTGGTATTAGAAACCTACCTCTTCTCTTTTTTTTTTTTTTTACAAATAGGGAAGTTCTGTGTATAATTCGAATATCATAAAGATTACCATATATAACACAAAATTTCGCCGCCGATTCCCTGTAGTCGAGCTTCTCGGTCTGTCATTATACCCCGAGAAGTAGAAAGAATTACAATGCCCATTCCGCCTAAAATTCTAGGAATTTGTTGATAGTTAGAATATATTCGGAGACCAGGTCGACTGATTTGTTTTAAATTTAAAATCGTTTTATATGGTCCTTTCCTATTTCTTCTATGTCGTAGGGTTAAAACCCAAAAATCCTTGTTGCTTTCCCGATGTTTCCGTACGTTTTCAATAAAACCTTCTCGTAAAAGTATTTTAACAATGTTTTCGGTGATGTTAGTAGATGGTATTCGAACCATTCCTTTTCTATTCATGTCAGCATTGCGAATAGAGGTTATTATGTTAGCAATAGTGTCCTTACCCATGATAAACAAAATTATTGGTTACTTTAAATTTTGATCTAATCAACAGTCTTTTTTATTAAATAGTTATGAATTTAAAAAGGTATATACGTGATACACAATCTACTAATTAATTTCATTCAAATACTATAACTATCTCACGGTCTCATCTTATAATACTTCAGGTGCTAATGAAATTCATGAATGGGCAATCCGAGAGGCCTCAAAAGCGATTCGCTTATGAATCTCCTATTGAAGAGTTATACTATGATCGCTCAGTGGTCCCCATGGAGAAGCATTCAGCCCTTGGAATTTCATAATGACTCTCAGACTTTGCAGAAGCGTCGAGCCTCCCCATCAGTTGGCATAAAAGTAAACTCTTCCTTTCCAGGAAAGGAGTTGACAGGCACTTTATTTCGGGCATTCTTGATCTGAATAAGTCAGCCCATATTCTATATTCACGACTTGCTCAAACAAGAGAAAGAAACAAACATAAAATTCTTTAGAGATATTACAATATGTTCCCTATGGTAACTGGGTTCATGAATTATGGTCAACAAACAGTACGTCTCTGGAACTTTTAGGCTAATTAAAAGCCAAAACAAAAGAAAAATATCGGCACTGCGGTCAACAAACAAAGGAAATTAAAACACTCCCTTCTTTCCTTTTTTGTTATTTAAGCGAAAATGATGAAAACCAGATCGAGCCGTCACTCTTGCGCTTCACCTGTCATACCCTGACTACACGGAACGAGACAATTCGATTGGCTTCACTCCTTCTGGTAATGGGACAAGTTCCCATGTCTCATTCTTCTTTAAGGTTCAGGCAGAAATCTCCTCTTTCATCGCATTCTCCCACTCTTTCAGGCCCTATTCGCAAACTGATCCTAAGTAATCGTTGTTGTTCATTGGATTCCGGAGGAACTACTTCGTTAGGATTGGGAAATTGCTGCGATTCTTCCTGAATAGCCTGGATTCTCCCGTCGAGAGTCGCTTTGAAAGTCTTACCTAAACTAGCCAATTGAAAGGATCTTCTGATCAATCCAGAGATCATTTCGATTCCATTAGTAATGAGGATTCGGAATATCACACATTGATCAATCAAAGAGAGATTCAACAACTAAAAGAAAGATCGATTCTTTGGGATCCTTCCTTTCTTCAAACGGAACGAACAGAGATAGAATCAGACCGATTCCCTAAATGCTTTTCTGGATATTCCTCAATGTCCCGGCTATTCACGGATCATTTAAGCTTACTTCTTGGGTAG

mRNA sequence

ATGCTAGACTTCCGTATGCGGGCACAAGCACCTGAGCAACAAGAGCCTGATATTGTGAGTAACTCTGGACCTGAGTCAAAAAAATCAGCTACACGAAGCCCTCCTGTCAGAAAAAAAAGCCCAAGGCCCGGCTATACATACATTTTCAAAAAAAAATTGTCCAAGGCTAATTCTTTTAGGTCTTTCTTCACAATAATTATGCTGATAATTATGATGCAGAAAATGCCAATTCAAATTAAATGTATTGAAAACGATGTTACTGTATGGATCGGAATTAAAAATCCCCCCAGGACCAAGAAATTACCCGACCCCGTATATCTAATTGGATCCTCATTATCTAAACAAACCCAAAACATACCATTGGTAAGTGATTCAGTAATTAAACCTTCAGAACTCCTTTTTTGTTCTTTCATTCCAGATGAAACATCTTTCAAAGGAAGTTCTGTGTATAATTCGAATATCATAAAGATTACCATATATAACACAAAATTTCGCCGCCGATTCCCTGTAGTCGAGCTTCTCGGTCTGTCATTATACCCCGAGAAGGTTAAAACCCAAAAATCCTTGTTGCTTTCCCGATGTTTCCGTACGTTTTCAATAAAACCTTCTCGTAAAAGTATTTTAACAATGTTTTCGGTGATGTTAGTAGATGGTATTCGAACCATTCCTTTTCTATTCATGTCAGCATTGCGAATAGAGGTTATTATGTTAGCAATAGTGTCCTTACCCATGATAAACAAAATTATTGATCGAGCCGTCACTCTTGCGCTTCACCTGTCATACCCTGACTACACGGAACGAGACAATTCGATTGGCTTCACTCCTTCTGGTAATGGGACAAGTTCCCATGTCTCATTCTTCTTTAAGGTTCAGGCAGAAATCTCCTCTTTCATCGCATTCTCCCACTCTTTCAGGCCCTATTCGCAAACTGATCCTAACCAATTGAAAGGATCTTCTGATCAATCCAGAGATCATTTCGATTCCATTAGTAATGAGGATTCGGAATATCACACATTGATCAATCAAAGAGAGATTCAACAACTAAAAGAAAGATCGATTCTTTGGGATCCTTCCTTTCTTCAAACGGAACGAACAGAGATAGAATCAGACCGATTCCCTAAATGCTTTTCTGGATATTCCTCAATGTCCCGGCTATTCACGGATCATTTAAGCTTACTTCTTGGGTAG

Coding sequence (CDS)

ATGCTAGACTTCCGTATGCGGGCACAAGCACCTGAGCAACAAGAGCCTGATATTGTGAGTAACTCTGGACCTGAGTCAAAAAAATCAGCTACACGAAGCCCTCCTGTCAGAAAAAAAAGCCCAAGGCCCGGCTATACATACATTTTCAAAAAAAAATTGTCCAAGGCTAATTCTTTTAGGTCTTTCTTCACAATAATTATGCTGATAATTATGATGCAGAAAATGCCAATTCAAATTAAATGTATTGAAAACGATGTTACTGTATGGATCGGAATTAAAAATCCCCCCAGGACCAAGAAATTACCCGACCCCGTATATCTAATTGGATCCTCATTATCTAAACAAACCCAAAACATACCATTGGTAAGTGATTCAGTAATTAAACCTTCAGAACTCCTTTTTTGTTCTTTCATTCCAGATGAAACATCTTTCAAAGGAAGTTCTGTGTATAATTCGAATATCATAAAGATTACCATATATAACACAAAATTTCGCCGCCGATTCCCTGTAGTCGAGCTTCTCGGTCTGTCATTATACCCCGAGAAGGTTAAAACCCAAAAATCCTTGTTGCTTTCCCGATGTTTCCGTACGTTTTCAATAAAACCTTCTCGTAAAAGTATTTTAACAATGTTTTCGGTGATGTTAGTAGATGGTATTCGAACCATTCCTTTTCTATTCATGTCAGCATTGCGAATAGAGGTTATTATGTTAGCAATAGTGTCCTTACCCATGATAAACAAAATTATTGATCGAGCCGTCACTCTTGCGCTTCACCTGTCATACCCTGACTACACGGAACGAGACAATTCGATTGGCTTCACTCCTTCTGGTAATGGGACAAGTTCCCATGTCTCATTCTTCTTTAAGGTTCAGGCAGAAATCTCCTCTTTCATCGCATTCTCCCACTCTTTCAGGCCCTATTCGCAAACTGATCCTAACCAATTGAAAGGATCTTCTGATCAATCCAGAGATCATTTCGATTCCATTAGTAATGAGGATTCGGAATATCACACATTGATCAATCAAAGAGAGATTCAACAACTAAAAGAAAGATCGATTCTTTGGGATCCTTCCTTTCTTCAAACGGAACGAACAGAGATAGAATCAGACCGATTCCCTAAATGCTTTTCTGGATATTCCTCAATGTCCCGGCTATTCACGGATCATTTAAGCTTACTTCTTGGGTAG

Protein sequence

MLDFRMRAQAPEQQEPDIVSNSGPESKKSATRSPPVRKKSPRPGYTYIFKKKLSKANSFRSFFTIIMLIIMMQKMPIQIKCIENDVTVWIGIKNPPRTKKLPDPVYLIGSSLSKQTQNIPLVSDSVIKPSELLFCSFIPDETSFKGSSVYNSNIIKITIYNTKFRRRFPVVELLGLSLYPEKVKTQKSLLLSRCFRTFSIKPSRKSILTMFSVMLVDGIRTIPFLFMSALRIEVIMLAIVSLPMINKIIDRAVTLALHLSYPDYTERDNSIGFTPSGNGTSSHVSFFFKVQAEISSFIAFSHSFRPYSQTDPNQLKGSSDQSRDHFDSISNEDSEYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFTDHLSLLLG
Homology
[Close]
BLAST of Cla97C11G214140.1 vs. NCBI nr
Match: ATV96702.1 (hypothetical chloroplast RF21 [Couroupita guianensis])

HSP 1 Score: 156.4 bits (394), Expect = 5.2e-34
Identity = 84/104 (80.77%), Postives = 90/104 (86.54%), Query Frame = 0 

Query: 286 FFFKVQAEISSFIAFSHSFRPYSQ-TDPNQLKGSSDQSRDHFDSISNEDSEYHTLINQRE 345
           FF KV+  +SS I +  +   + Q TD NQLKGSSDQSRDHFDSISNEDSEYHTLINQRE
Sbjct: 364 FFSKVR-NVSSNIQYDSTKSSFVQVTDSNQLKGSSDQSRDHFDSISNEDSEYHTLINQRE 423

Query: 346 IQQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFTD 389
           IQQLKERSILWDPSFLQTERTEIESDRFPKC SGYSSMSRLFT+
Sbjct: 424 IQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTE 466

[Close]
BLAST of Cla97C11G214140.1 vs. NCBI nr
Match: ATV96723.1 (hypothetical chloroplast RF21 [Couroupita guianensis])

HSP 1 Score: 156.4 bits (394), Expect = 5.2e-34
Identity = 84/104 (80.77%), Postives = 90/104 (86.54%), Query Frame = 0 

Query: 286 FFFKVQAEISSFIAFSHSFRPYSQ-TDPNQLKGSSDQSRDHFDSISNEDSEYHTLINQRE 345
           FF KV+  +SS I +  +   + Q TD NQLKGSSDQSRDHFDSISNEDSEYHTLINQRE
Sbjct: 364 FFSKVR-NVSSNIQYDSTKSSFVQVTDSNQLKGSSDQSRDHFDSISNEDSEYHTLINQRE 423

Query: 346 IQQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFTD 389
           IQQLKERSILWDPSFLQTERTEIESDRFPKC SGYSSMSRLFT+
Sbjct: 424 IQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTE 466

[Close]
BLAST of Cla97C11G214140.1 vs. NCBI nr
Match: QIT04093.1 (Ycf2 protein [Luffa aegyptiaca] >QIT04110.1 Ycf2 protein [Luffa aegyptiaca] >QKX48604.1 hypothetical chloroplast RF21 [Luffa aegyptiaca] >QKX48623.1 hypothetical chloroplast RF21 [Luffa aegyptiaca])

HSP 1 Score: 154.8 bits (390), Expect = 1.5e-33
Identity = 82/103 (79.61%), Postives = 87/103 (84.47%), Query Frame = 0 

Query: 286 FFFKVQAEISSFIAFSHSFRPYSQTDPNQLKGSSDQSRDHFDSISNEDSEYHTLINQREI 345
           FF KV+  +S+    S        TD +QLKGSSDQSRDHFDSISNEDSEYHTLINQREI
Sbjct: 360 FFSKVRNVLSNIQYDSTRSSFVQVTDSSQLKGSSDQSRDHFDSISNEDSEYHTLINQREI 419

Query: 346 QQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFTD 389
           QQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFT+
Sbjct: 420 QQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFTE 462

[Close]
BLAST of Cla97C11G214140.1 vs. NCBI nr
Match: YP_010131137.1 (hypothetical protein RF2 [Benincasa hispida] >YP_010131154.1 hypothetical protein RF2 [Benincasa hispida] >QPZ75785.1 hypothetical protein RF2 [Benincasa hispida] >QPZ75802.1 hypothetical protein RF2 [Benincasa hispida] >QSQ72354.1 Ycf2 protein [Benincasa hispida] >QSQ72372.1 Ycf2 protein [Benincasa hispida])

HSP 1 Score: 154.8 bits (390), Expect = 1.5e-33
Identity = 82/103 (79.61%), Postives = 87/103 (84.47%), Query Frame = 0 

Query: 286 FFFKVQAEISSFIAFSHSFRPYSQTDPNQLKGSSDQSRDHFDSISNEDSEYHTLINQREI 345
           FF KV+  +S+    S        TD +QLKGSSDQSRDHFDSISNEDSEYHTLINQREI
Sbjct: 360 FFSKVRNVLSNIQYDSTRSSFVQVTDSSQLKGSSDQSRDHFDSISNEDSEYHTLINQREI 419

Query: 346 QQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFTD 389
           QQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFT+
Sbjct: 420 QQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFTE 462

[Close]
BLAST of Cla97C11G214140.1 vs. NCBI nr
Match: YP_009752033.1 (Ycf2 protein [Cionosicys macranthus] >YP_009752051.1 Ycf2 protein [Cionosicys macranthus] >QIT05274.1 Ycf2 protein [Cionosicys macranthus] >QIT05292.1 Ycf2 protein [Cionosicys macranthus])

HSP 1 Score: 154.8 bits (390), Expect = 1.5e-33
Identity = 82/103 (79.61%), Postives = 87/103 (84.47%), Query Frame = 0 

Query: 286 FFFKVQAEISSFIAFSHSFRPYSQTDPNQLKGSSDQSRDHFDSISNEDSEYHTLINQREI 345
           FF KV+  +S+    S        TD +QLKGSSDQSRDHFDSISNEDSEYHTLINQREI
Sbjct: 360 FFSKVRNVLSNIQYDSTRSSFVQVTDSSQLKGSSDQSRDHFDSISNEDSEYHTLINQREI 419

Query: 346 QQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFTD 389
           QQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFT+
Sbjct: 420 QQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFTE 462

[Close]
BLAST of Cla97C11G214140.1 vs. ExPASy Swiss-Prot
Match: Q09FP8 (Protein Ycf2 OS=Nandina domestica OX=41776 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.4e-36
Identity = 83/105 (79.05%), Postives = 91/105 (86.67%), Query Frame = 0 

Query: 285 SFFFKVQAEISSFIAFSHSFRPYSQ-TDPNQLKGSSDQSRDHFDSISNEDSEYHTLINQR 344
           SFF KV+  +SS + +  +   + Q TD +QLKGSSDQSRDHFDSISNEDSEYHTLINQR
Sbjct: 371 SFFSKVR-NVSSNMQYDSTRSIFVQVTDSSQLKGSSDQSRDHFDSISNEDSEYHTLINQR 430

Query: 345 EIQQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFTD 389
           EIQQLKERSILWDPSFLQTERTEIESDRFPKC SGYSSMSRLFT+
Sbjct: 431 EIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTE 474

[Close]
BLAST of Cla97C11G214140.1 vs. ExPASy Swiss-Prot
Match: Q06GT4 (Protein Ycf2 OS=Drimys granadensis OX=224735 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 7.5e-36
Identity = 83/104 (79.81%), Postives = 89/104 (85.58%), Query Frame = 0 

Query: 286 FFFKVQAEISSFIAFSHSFRPYSQ-TDPNQLKGSSDQSRDHFDSISNEDSEYHTLINQRE 345
           FF KVQ  +SS I +  +   + Q TD +QLKGSSDQSRDHFDSISNEDSEYHTLINQ E
Sbjct: 369 FFSKVQ-NVSSNIQYDSTRSIFVQVTDSSQLKGSSDQSRDHFDSISNEDSEYHTLINQTE 428

Query: 346 IQQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFTD 389
           IQQLKERSILWDPSFLQTERTEIESDRFPKC SGYSSMSRLFT+
Sbjct: 429 IQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTE 471

[Close]
BLAST of Cla97C11G214140.1 vs. ExPASy Swiss-Prot
Match: Q14F97 (Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 9.8e-36
Identity = 81/103 (78.64%), Postives = 86/103 (83.50%), Query Frame = 0 

Query: 287 FFKVQAEISSFIAFSHSFRPYSQ-TDPNQLKGSSDQSRDHFDSISNEDSEYHTLINQREI 346
           FF     ISS I +  +   + Q  D +QLKGSSDQSRDHFDSISNEDSEYHTLINQREI
Sbjct: 364 FFSKARNISSNIQYDSTRSSFLQGRDSSQLKGSSDQSRDHFDSISNEDSEYHTLINQREI 423

Query: 347 QQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFTD 389
           QQLKERSILWDPSFLQTERTEIESDRFPKC SGYSSMSRLFT+
Sbjct: 424 QQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTE 466

[Close]
BLAST of Cla97C11G214140.1 vs. ExPASy Swiss-Prot
Match: A4GYV4 (Protein Ycf2 OS=Populus trichocarpa OX=3694 GN=ycf2-1 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 9.8e-36
Identity = 81/103 (78.64%), Postives = 86/103 (83.50%), Query Frame = 0 

Query: 287 FFKVQAEISSFIAFSHSFRPYSQ-TDPNQLKGSSDQSRDHFDSISNEDSEYHTLINQREI 346
           FF     ISS I +  +   + Q  D +QLKGSSDQSRDHFDSISNEDSEYHTLINQREI
Sbjct: 364 FFSKARNISSNIQYDSTRSSFVQGRDSSQLKGSSDQSRDHFDSISNEDSEYHTLINQREI 423

Query: 347 QQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFTD 389
           QQLKERSILWDPSFLQTERTEIESDRFPKC SGYSSMSRLFT+
Sbjct: 424 QQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTE 466

[Close]
BLAST of Cla97C11G214140.1 vs. ExPASy Swiss-Prot
Match: A0ZZ78 (Protein Ycf2 OS=Gossypium barbadense OX=3634 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.9e-35
Identity = 82/104 (78.85%), Postives = 88/104 (84.62%), Query Frame = 0 

Query: 286 FFFKVQAEISSFIAFSHSFRPYSQ-TDPNQLKGSSDQSRDHFDSISNEDSEYHTLINQRE 345
           FF KV+  +SS I +  +   + Q TD  QLKGSSDQSRD FDSISNEDSEYHTLINQRE
Sbjct: 364 FFSKVR-NVSSNIQYDSTRSSFVQVTDSRQLKGSSDQSRDRFDSISNEDSEYHTLINQRE 423

Query: 346 IQQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFTD 389
           IQQLKERSILWDPSFLQTERTEIESDRFPKC SGYSSMSRLFT+
Sbjct: 424 IQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTE 466

[Close]
BLAST of Cla97C11G214140.1 vs. ExPASy TrEMBL
Match: A0A2H4NTR8 (Protein Ycf2 OS=Couroupita guianensis OX=66684 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.5e-34
Identity = 84/104 (80.77%), Postives = 90/104 (86.54%), Query Frame = 0 

Query: 286 FFFKVQAEISSFIAFSHSFRPYSQ-TDPNQLKGSSDQSRDHFDSISNEDSEYHTLINQRE 345
           FF KV+  +SS I +  +   + Q TD NQLKGSSDQSRDHFDSISNEDSEYHTLINQRE
Sbjct: 364 FFSKVR-NVSSNIQYDSTKSSFVQVTDSNQLKGSSDQSRDHFDSISNEDSEYHTLINQRE 423

Query: 346 IQQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFTD 389
           IQQLKERSILWDPSFLQTERTEIESDRFPKC SGYSSMSRLFT+
Sbjct: 424 IQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTE 466

[Close]
BLAST of Cla97C11G214140.1 vs. ExPASy TrEMBL
Match: A0A2H4NTS8 (Protein Ycf2 OS=Couroupita guianensis OX=66684 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.5e-34
Identity = 84/104 (80.77%), Postives = 90/104 (86.54%), Query Frame = 0 

Query: 286 FFFKVQAEISSFIAFSHSFRPYSQ-TDPNQLKGSSDQSRDHFDSISNEDSEYHTLINQRE 345
           FF KV+  +SS I +  +   + Q TD NQLKGSSDQSRDHFDSISNEDSEYHTLINQRE
Sbjct: 364 FFSKVR-NVSSNIQYDSTKSSFVQVTDSNQLKGSSDQSRDHFDSISNEDSEYHTLINQRE 423

Query: 346 IQQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFTD 389
           IQQLKERSILWDPSFLQTERTEIESDRFPKC SGYSSMSRLFT+
Sbjct: 424 IQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTE 466

[Close]
BLAST of Cla97C11G214140.1 vs. ExPASy TrEMBL
Match: A0A2H4T233 (Protein Ycf2 OS=Cucurbita maxima OX=3661 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 7.3e-34
Identity = 82/103 (79.61%), Postives = 87/103 (84.47%), Query Frame = 0 

Query: 286 FFFKVQAEISSFIAFSHSFRPYSQTDPNQLKGSSDQSRDHFDSISNEDSEYHTLINQREI 345
           FF KV+  +S+    S        TD +QLKGSSDQSRDHFDSISNEDSEYHTLINQREI
Sbjct: 360 FFSKVRNVLSNIQYDSTRSSFVQVTDSSQLKGSSDQSRDHFDSISNEDSEYHTLINQREI 419

Query: 346 QQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFTD 389
           QQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFT+
Sbjct: 420 QQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFTE 462

[Close]
BLAST of Cla97C11G214140.1 vs. ExPASy TrEMBL
Match: A0A249RYX8 (Protein Ycf2 OS=Cucumis melo var. momordica OX=2034244 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 7.3e-34
Identity = 82/103 (79.61%), Postives = 87/103 (84.47%), Query Frame = 0 

Query: 286 FFFKVQAEISSFIAFSHSFRPYSQTDPNQLKGSSDQSRDHFDSISNEDSEYHTLINQREI 345
           FF KV+  +S+    S        TD +QLKGSSDQSRDHFDSISNEDSEYHTLINQREI
Sbjct: 360 FFSKVRNVLSNIQYDSTRSSFVQVTDSSQLKGSSDQSRDHFDSISNEDSEYHTLINQREI 419

Query: 346 QQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFTD 389
           QQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFT+
Sbjct: 420 QQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFTE 462

[Close]
BLAST of Cla97C11G214140.1 vs. ExPASy TrEMBL
Match: A0A6H0ET42 (Protein Ycf2 OS=Trichosanthes kirilowii OX=3677 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 7.3e-34
Identity = 82/103 (79.61%), Postives = 87/103 (84.47%), Query Frame = 0 

Query: 286 FFFKVQAEISSFIAFSHSFRPYSQTDPNQLKGSSDQSRDHFDSISNEDSEYHTLINQREI 345
           FF KV+  +S+    S        TD +QLKGSSDQSRDHFDSISNEDSEYHTLINQREI
Sbjct: 360 FFSKVRNVLSNIQYDSTRSSFVQVTDSSQLKGSSDQSRDHFDSISNEDSEYHTLINQREI 419

Query: 346 QQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFTD 389
           QQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFT+
Sbjct: 420 QQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFTE 462

[Close]
BLAST of Cla97C11G214140.1 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 121.3 bits (303), Expect = 1.7e-27
Identity = 73/106 (68.87%), Postives = 81/106 (76.42%), Query Frame = 0 

Query: 286 FFFKVQAEISSFIAFSHSFRPYSQ-TDPNQLKGSSDQSRDHFDSISNEDSE--YHTLINQ 345
           FF KV+  +SS I +  +   + Q TD +QL GSSDQ  D FDSISNEDSE  YHTLINQ
Sbjct: 364 FFSKVR-NVSSNIQYDSTRSSFVQVTDSSQLNGSSDQFIDPFDSISNEDSEYHYHTLINQ 423

Query: 346 REIQQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFTD 389
           REIQQLKERSIL DPSF+QTE  EIESDRFPK  SGYSSM RLFT+
Sbjct: 424 REIQQLKERSILLDPSFIQTEGREIESDRFPKYLSGYSSMPRLFTE 468

[Close]
BLAST of Cla97C11G214140.1 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 121.3 bits (303), Expect = 1.7e-27
Identity = 73/106 (68.87%), Postives = 81/106 (76.42%), Query Frame = 0 

Query: 286 FFFKVQAEISSFIAFSHSFRPYSQ-TDPNQLKGSSDQSRDHFDSISNEDSE--YHTLINQ 345
           FF KV+  +SS I +  +   + Q TD +QL GSSDQ  D FDSISNEDSE  YHTLINQ
Sbjct: 364 FFSKVR-NVSSNIQYDSTRSSFVQVTDSSQLNGSSDQFIDPFDSISNEDSEYHYHTLINQ 423

Query: 346 REIQQLKERSILWDPSFLQTERTEIESDRFPKCFSGYSSMSRLFTD 389
           REIQQLKERSIL DPSF+QTE  EIESDRFPK  SGYSSM RLFT+
Sbjct: 424 REIQQLKERSILLDPSFIQTEGREIESDRFPKYLSGYSSMPRLFTE 468

The following BLAST results are available for this feature:
BLAST of Cla97C11G214140.1 vs. NCBI nr
Match NameE-valueIdentityDescription
ATV96702.15.2e-3480.77hypothetical chloroplast RF21 [Couroupita guianensis][more]
ATV96723.15.2e-3480.77hypothetical chloroplast RF21 [Couroupita guianensis][more]
QIT04093.11.5e-3379.61Ycf2 protein [Luffa aegyptiaca] >QIT04110.1 Ycf2 protein [Luffa aegyptiaca] >QKX... [more]
YP_010131137.11.5e-3379.61hypothetical protein RF2 [Benincasa hispida] >YP_010131154.1 hypothetical protei... [more]
YP_009752033.11.5e-3379.61Ycf2 protein [Cionosicys macranthus] >YP_009752051.1 Ycf2 protein [Cionosicys ma... [more]
BLAST of Cla97C11G214140.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q09FP84.4e-3679.05Protein Ycf2 OS=Nandina domestica OX=41776 GN=ycf2-A PE=3 SV=1[more]
Q06GT47.5e-3679.81Protein Ycf2 OS=Drimys granadensis OX=224735 GN=ycf2-A PE=3 SV=1[more]
Q14F979.8e-3678.64Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1[more]
A4GYV49.8e-3678.64Protein Ycf2 OS=Populus trichocarpa OX=3694 GN=ycf2-1 PE=3 SV=1[more]
A0ZZ782.9e-3578.85Protein Ycf2 OS=Gossypium barbadense OX=3634 GN=ycf2-A PE=3 SV=1[more]
BLAST of Cla97C11G214140.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2H4NTR82.5e-3480.77Protein Ycf2 OS=Couroupita guianensis OX=66684 GN=ycf2 PE=3 SV=1[more]
A0A2H4NTS82.5e-3480.77Protein Ycf2 OS=Couroupita guianensis OX=66684 GN=ycf2 PE=3 SV=1[more]
A0A2H4T2337.3e-3479.61Protein Ycf2 OS=Cucurbita maxima OX=3661 GN=ycf2 PE=3 SV=1[more]
A0A249RYX87.3e-3479.61Protein Ycf2 OS=Cucumis melo var. momordica OX=2034244 GN=ycf2 PE=3 SV=1[more]
A0A6H0ET427.3e-3479.61Protein Ycf2 OS=Trichosanthes kirilowii OX=3677 GN=ycf2 PE=3 SV=1[more]
BLAST of Cla97C11G214140.1 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00860.11.7e-2768.87Chloroplast Ycf2;ATPase, AAA type, core [more]
ATCG01280.11.7e-2768.87Chloroplast Ycf2;ATPase, AAA type, core [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008543Uncharacterised protein family Ycf2PFAMPF05695DUF825coord: 286..388
e-value: 1.2E-44
score: 152.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43
NoneNo IPR availablePANTHERPTHR33078:SF69BNAA06G19310D PROTEINcoord: 286..388
NoneNo IPR availablePANTHERPTHR33078PROTEIN YCF2-RELATEDcoord: 286..388

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla97C11G214140Cla97C11G214140gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C11G214140.1-exonCla97C11G214140.1-exon-Cla97Chr11:7670193..7670442exon
Cla97C11G214140.1-exonCla97C11G214140.1-exon-Cla97Chr11:7670569..7670758exon
Cla97C11G214140.1-exonCla97C11G214140.1-exon-Cla97Chr11:7671418..7671620exon
Cla97C11G214140.1-exonCla97C11G214140.1-exon-Cla97Chr11:7671764..7671873exon
Cla97C11G214140.1-exonCla97C11G214140.1-exon-Cla97Chr11:7671944..7672058exon
Cla97C11G214140.1-exonCla97C11G214140.1-exon-Cla97Chr11:7672692..7673011exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C11G214140.1-cdsCla97C11G214140.1-cds-Cla97Chr11:7670193..7670442CDS
Cla97C11G214140.1-cdsCla97C11G214140.1-cds-Cla97Chr11:7670569..7670758CDS
Cla97C11G214140.1-cdsCla97C11G214140.1-cds-Cla97Chr11:7671418..7671620CDS
Cla97C11G214140.1-cdsCla97C11G214140.1-cds-Cla97Chr11:7671764..7671873CDS
Cla97C11G214140.1-cdsCla97C11G214140.1-cds-Cla97Chr11:7671944..7672058CDS
Cla97C11G214140.1-cdsCla97C11G214140.1-cds-Cla97Chr11:7672692..7673011CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla97C11G214140.1Cla97C11G214140.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005524 ATP binding
molecular_function GO:0016887 ATP hydrolysis activity