Cla97C11G206490.1 (mRNA) Watermelon (97103) v2.5

Overview


Name	Cla97C11G206490.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	WD repeat-containing protein RUP2-like
Location	Cla97Chr11: 197091 .. 197447 (+)
Sequence length	357
RNA-Seq Expression	Cla97C11G206490.1
Synteny	Cla97C11G206490.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTTGTAGTCGGTGCATTAGGGTCAAAAGACGACACGGTGCAAGTATGGGACGCACGCTGCGACGGTGGGGACTGCGTGGCGGTGGTGCAGCCAAGTGGTACTGAGTCAGCTTTGTTGTGTGGAATTCAACCCGTACAATGGCAAGTTGGTGGGAGTTGGATGCGCGAATATGAAGCATACGGGGACGACCAGTACAAAATGGGGGAAGCAATTGTGGTATCCGAAGGGCACGCGAAAACAGTGATGTATGTGAAATTCATGGACAGAAGGACAATGGTGTCAACGAGTACAAAGGGAGGGACGATCGTGTCGACTCGTAGGAAAAGGAAAATGGTGGAAAAACATTGTTGA

mRNA sequence

ATGGATCTTGTAGTCGGTGCATTAGGGTCAAAAGACGACACGGTGCAAGTATGGGACGCACGCTGCGACGGTGGGGACTGCGTGGCGGTGGTGCAGCCAAGTGGTACTGAGTCAGCTTTGTTGTGTGGAATTCAACCCGTACAATGGCAAGTTGGTGGGAGTTGGATGCGCGAATATGAAGCATACGGGGACGACCAGTACAAAATGGGGGAAGCAATTGTGGTATCCGAAGGGCACGCGAAAACAGTGATGTATGTGAAATTCATGGACAGAAGGACAATGGTGTCAACGAGTACAAAGGGAGGGACGATCGTGTCGACTCGTAGGAAAAGGAAAATGGTGGAAAAACATTGTTGA

Coding sequence (CDS)

ATGGATCTTGTAGTCGGTGCATTAGGGTCAAAAGACGACACGGTGCAAGTATGGGACGCACGCTGCGACGGTGGGGACTGCGTGGCGGTGGTGCAGCCAAGTGGTACTGAGTCAGCTTTGTTGTGTGGAATTCAACCCGTACAATGGCAAGTTGGTGGGAGTTGGATGCGCGAATATGAAGCATACGGGGACGACCAGTACAAAATGGGGGAAGCAATTGTGGTATCCGAAGGGCACGCGAAAACAGTGATGTATGTGAAATTCATGGACAGAAGGACAATGGTGTCAACGAGTACAAAGGGAGGGACGATCGTGTCGACTCGTAGGAAAAGGAAAATGGTGGAAAAACATTGTTGA

Protein sequence

MDLVVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLCGIQPVQWQVGGSWMREYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTSTKGGTIVSTRRKRKMVEKHC

Homology

[Close]

BLAST of Cla97C11G206490.1 vs. NCBI nr
Match: XP_038887335.1 (WD repeat-containing protein RUP2-like [Benincasa hispida])

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-18
Identity = 56/102 (54.90%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 1   MDLVVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLC-GIQPVQWQVGGSWMREY 60
           +D VVGA GS D TVQVWD RCDGG+CVAVVQPS   S + C    P    +      + 
Sbjct: 167 VDPVVGASGSDDGTVQVWDTRCDGGECVAVVQPSVVRSPVCCVEFNPYGGALVAVGCADR 226

Query: 61  EAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTSTKG 102
           +AYG D+ KM E +VV EGH KTV YVKF+D  T+VS ST G
Sbjct: 227 KAYGYDRRKMREPVVVFEGHGKTVTYVKFVDGGTVVSASTDG 268

[Close]

BLAST of Cla97C11G206490.1 vs. NCBI nr
Match: XP_022971842.1 (WD repeat-containing protein RUP2-like [Cucurbita maxima])

HSP 1 Score: 101.3 bits (251), Expect = 5.9e-18
Identity = 56/102 (54.90%), Postives = 67/102 (65.69%), Query Frame = 0


Query: 1   MDLVVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLC-GIQPVQWQVGGSWMREY 60
           +D +VGA GS D TVQVWD RCDG DCVAVVQPS   S + C    P    +      + 
Sbjct: 140 VDPMVGASGSDDGTVQVWDTRCDGVDCVAVVQPSMVRSPVCCVEFNPYGGALVVVGCADR 199

Query: 61  EAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTSTKG 102
           +AYG D+ KM EA++V EGHAKTV YVKF+D  T+VS ST G
Sbjct: 200 KAYGYDRRKMTEAVMVFEGHAKTVTYVKFVDGGTIVSASTDG 241

[Close]

BLAST of Cla97C11G206490.1 vs. NCBI nr
Match: XP_022952662.1 (WD repeat-containing protein RUP2-like [Cucurbita moschata])

HSP 1 Score: 101.3 bits (251), Expect = 5.9e-18
Identity = 56/102 (54.90%), Postives = 67/102 (65.69%), Query Frame = 0


Query: 1   MDLVVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLC-GIQPVQWQVGGSWMREY 60
           +D +VGA GS D TVQVWD RCDG DCVAVVQPS   S + C    P    +      + 
Sbjct: 141 VDPMVGASGSDDGTVQVWDTRCDGVDCVAVVQPSVVRSPVCCVEFNPYGGALVVVGCADR 200

Query: 61  EAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTSTKG 102
           +AYG D+ KM EA++V EGHAKTV YVKF+D  T+VS ST G
Sbjct: 201 KAYGYDRRKMTEAVMVFEGHAKTVTYVKFVDGGTIVSASTDG 242

[Close]

BLAST of Cla97C11G206490.1 vs. NCBI nr
Match: KAG6571808.1 (WD repeat-containing protein RUP2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011503.1 WD repeat-containing protein RUP2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 101.3 bits (251), Expect = 5.9e-18
Identity = 56/102 (54.90%), Postives = 67/102 (65.69%), Query Frame = 0


Query: 1   MDLVVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLC-GIQPVQWQVGGSWMREY 60
           +D +VGA GS D TVQVWD RCDG DCVAVVQPS   S + C    P    +      + 
Sbjct: 141 VDPMVGASGSDDGTVQVWDTRCDGVDCVAVVQPSMVRSPVCCVEFNPYGGALVVVGCADR 200

Query: 61  EAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTSTKG 102
           +AYG D+ KM EA++V EGHAKTV YVKF+D  T+VS ST G
Sbjct: 201 KAYGYDRRKMTEAVMVFEGHAKTVTYVKFVDGGTIVSASTDG 242

[Close]

BLAST of Cla97C11G206490.1 vs. NCBI nr
Match: XP_023554180.1 (WD repeat-containing protein RUP2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 100.1 bits (248), Expect = 1.3e-17
Identity = 55/99 (55.56%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 4   VVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLC-GIQPVQWQVGGSWMREYEAY 63
           +VGA GS D TVQVWD RCDG DCVAVVQPS   S + C    P    +      + +AY
Sbjct: 144 MVGASGSDDGTVQVWDTRCDGVDCVAVVQPSMVRSPVCCVEFNPYGGALVVVGCADRKAY 203

Query: 64  GDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTSTKG 102
           G D+ KM EA++V EGHAKTV YVKF+D  T+VS ST G
Sbjct: 204 GYDRRKMTEAVMVFEGHAKTVTYVKFLDGGTIVSASTDG 242

[Close]

BLAST of Cla97C11G206490.1 vs. ExPASy Swiss-Prot
Match: Q9FFA7 (WD repeat-containing protein RUP2 OS=Arabidopsis thaliana OX=3702 GN=RUP2 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-09
Identity = 36/99 (36.36%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 5   VGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLCGIQ--PVQWQVGGSWMREYEAY 64
           VGA GS D T+QVWD RC   + V VV+P+G   + +C ++  P           + + Y
Sbjct: 161 VGASGSDDGTMQVWDPRCPPEESVGVVRPAGICRSAVCCVEFDPSGGPAVAVGCADRKGY 220

Query: 65  GDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTSTKG 102
             D  K+ +  +  +GH KTV YV+F+D  T+V+  T G
Sbjct: 221 VYDIRKLVDPALTLQGHTKTVSYVRFLDGGTVVTAGTDG 259

[Close]

BLAST of Cla97C11G206490.1 vs. ExPASy Swiss-Prot
Match: Q9LTJ6 (WD repeat-containing protein RUP1 OS=Arabidopsis thaliana OX=3702 GN=RUP1 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.2e-09
Identity = 39/102 (38.24%), Postives = 59/102 (57.84%), Query Frame = 0


Query: 4   VVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLCGIQPVQWQVGGSWM----REY 63
           ++GA GS D TVQ+WD R +GG     V+P G   A +C ++   +  GGS +     + 
Sbjct: 181 LIGASGSDDGTVQMWDPR-NGGTLEETVRPGG--GAAICSVEFDPF--GGSSIAVGCADR 240

Query: 64  EAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTSTKG 102
            AY  D  ++ + ++V +GH KTV Y +FMD  T+V+ ST G
Sbjct: 241 NAYVYDIRRLVDPLIVLDGHTKTVTYARFMDSHTIVTGSTDG 277

[Close]

BLAST of Cla97C11G206490.1 vs. ExPASy TrEMBL
Match: A0A6J1I327 (WD repeat-containing protein RUP2-like OS=Cucurbita maxima OX=3661 GN=LOC111470535 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.9e-18
Identity = 56/102 (54.90%), Postives = 67/102 (65.69%), Query Frame = 0


Query: 1   MDLVVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLC-GIQPVQWQVGGSWMREY 60
           +D +VGA GS D TVQVWD RCDG DCVAVVQPS   S + C    P    +      + 
Sbjct: 140 VDPMVGASGSDDGTVQVWDTRCDGVDCVAVVQPSMVRSPVCCVEFNPYGGALVVVGCADR 199

Query: 61  EAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTSTKG 102
           +AYG D+ KM EA++V EGHAKTV YVKF+D  T+VS ST G
Sbjct: 200 KAYGYDRRKMTEAVMVFEGHAKTVTYVKFVDGGTIVSASTDG 241

[Close]

BLAST of Cla97C11G206490.1 vs. ExPASy TrEMBL
Match: A0A6J1GKZ5 (WD repeat-containing protein RUP2-like OS=Cucurbita moschata OX=3662 GN=LOC111455289 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.9e-18
Identity = 56/102 (54.90%), Postives = 67/102 (65.69%), Query Frame = 0


Query: 1   MDLVVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLC-GIQPVQWQVGGSWMREY 60
           +D +VGA GS D TVQVWD RCDG DCVAVVQPS   S + C    P    +      + 
Sbjct: 141 VDPMVGASGSDDGTVQVWDTRCDGVDCVAVVQPSVVRSPVCCVEFNPYGGALVVVGCADR 200

Query: 61  EAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTSTKG 102
           +AYG D+ KM EA++V EGHAKTV YVKF+D  T+VS ST G
Sbjct: 201 KAYGYDRRKMTEAVMVFEGHAKTVTYVKFVDGGTIVSASTDG 242

[Close]

BLAST of Cla97C11G206490.1 vs. ExPASy TrEMBL
Match: A0A0A0LHK2 (Ubiquitin ligase protein cop1 OS=Cucumis sativus OX=3659 GN=Csa_3G914590 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.1e-17
Identity = 54/99 (54.55%), Postives = 64/99 (64.65%), Query Frame = 0


Query: 4   VVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLC-GIQPVQWQVGGSWMREYEAY 63
           VVGA GS D TVQVWD RC+ G+CVAVVQPS   SA+ C    P    +      + +AY
Sbjct: 168 VVGASGSDDGTVQVWDTRCESGECVAVVQPSVVRSAVCCVEFNPFGGGLVAVGCADRKAY 227

Query: 64  GDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTSTKG 102
           G D+ KM E +VV EGH KTV YVKF+D  T+VS ST G
Sbjct: 228 GYDRRKMREPVVVFEGHGKTVTYVKFVDGGTVVSASTDG 266

[Close]

BLAST of Cla97C11G206490.1 vs. ExPASy TrEMBL
Match: A0A5A7T553 (WD repeat-containing protein RUP2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G00140 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.1e-17
Identity = 53/99 (53.54%), Postives = 63/99 (63.64%), Query Frame = 0


Query: 4   VVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLC-GIQPVQWQVGGSWMREYEAY 63
           VVGA GS D TVQVWD RC+ G+CVAVVQPS   S + C    P    +      + +AY
Sbjct: 166 VVGASGSDDGTVQVWDTRCESGECVAVVQPSVVRSPVCCVEFNPYGGGLVAVGCADRKAY 225

Query: 64  GDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTSTKG 102
           G D+ KM E +VV EGH KTV YVKF+D  T+VS ST G
Sbjct: 226 GYDRRKMREPVVVFEGHGKTVTYVKFVDGGTVVSASTDG 264

[Close]

BLAST of Cla97C11G206490.1 vs. ExPASy TrEMBL
Match: W9S7H7 (E3 ubiquitin-protein ligase COP1 OS=Morus notabilis OX=981085 GN=L484_015775 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.0e-15
Identity = 44/100 (44.00%), Postives = 67/100 (67.00%), Query Frame = 0


Query: 4   VVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLCGIQ--PVQWQVGGSWMREYEA 63
           V+ A GS D T+Q+WD RCDGG+CVA V+PS T+++ +C ++  P    +      + +A
Sbjct: 187 VMAASGSDDGTMQMWDPRCDGGECVATVRPSATKTSSVCCVEFNPFGGPLVAVGCADRKA 246

Query: 64  YGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTSTKG 102
           YG D  K+ + +++ +GH KTV YV+F+D RTMVS+ T G
Sbjct: 247 YGYDVRKLSDPVLILDGHQKTVTYVRFLDDRTMVSSGTDG 286

[Close]

BLAST of Cla97C11G206490.1 vs. TAIR 10
Match: AT5G23730.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 7.5e-11
Identity = 36/99 (36.36%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 5   VGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLCGIQ--PVQWQVGGSWMREYEAY 64
           VGA GS D T+QVWD RC   + V VV+P+G   + +C ++  P           + + Y
Sbjct: 161 VGASGSDDGTMQVWDPRCPPEESVGVVRPAGICRSAVCCVEFDPSGGPAVAVGCADRKGY 220

Query: 65  GDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTSTKG 102
             D  K+ +  +  +GH KTV YV+F+D  T+V+  T G
Sbjct: 221 VYDIRKLVDPALTLQGHTKTVSYVRFLDGGTVVTAGTDG 259

[Close]

BLAST of Cla97C11G206490.1 vs. TAIR 10
Match: AT5G52250.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 62.0 bits (149), Expect = 3.7e-10
Identity = 39/102 (38.24%), Postives = 59/102 (57.84%), Query Frame = 0


Query: 4   VVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLCGIQPVQWQVGGSWM----REY 63
           ++GA GS D TVQ+WD R +GG     V+P G   A +C ++   +  GGS +     + 
Sbjct: 181 LIGASGSDDGTVQMWDPR-NGGTLEETVRPGG--GAAICSVEFDPF--GGSSIAVGCADR 240

Query: 64  EAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTSTKG 102
            AY  D  ++ + ++V +GH KTV Y +FMD  T+V+ ST G
Sbjct: 241 NAYVYDIRRLVDPLIVLDGHTKTVTYARFMDSHTIVTGSTDG 277

The following BLAST results are available for this feature:

BLAST of Cla97C11G206490.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887335.1	1.6e-18	54.90	WD repeat-containing protein RUP2-like [Benincasa hispida]	[more]
XP_022971842.1	5.9e-18	54.90	WD repeat-containing protein RUP2-like [Cucurbita maxima]	[more]
XP_022952662.1	5.9e-18	54.90	WD repeat-containing protein RUP2-like [Cucurbita moschata]	[more]
KAG6571808.1	5.9e-18	54.90	WD repeat-containing protein RUP2, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023554180.1	1.3e-17	55.56	WD repeat-containing protein RUP2-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cla97C11G206490.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FFA7	1.0e-09	36.36	WD repeat-containing protein RUP2 OS=Arabidopsis thaliana OX=3702 GN=RUP2 PE=1 S...	[more]
Q9LTJ6	5.2e-09	38.24	WD repeat-containing protein RUP1 OS=Arabidopsis thaliana OX=3702 GN=RUP1 PE=1 S...	[more]

BLAST of Cla97C11G206490.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I327	2.9e-18	54.90	WD repeat-containing protein RUP2-like OS=Cucurbita maxima OX=3661 GN=LOC1114705...	[more]
A0A6J1GKZ5	2.9e-18	54.90	WD repeat-containing protein RUP2-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A0A0LHK2	1.1e-17	54.55	Ubiquitin ligase protein cop1 OS=Cucumis sativus OX=3659 GN=Csa_3G914590 PE=4 SV...	[more]
A0A5A7T553	4.1e-17	53.54	WD repeat-containing protein RUP2-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
W9S7H7	1.0e-15	44.00	E3 ubiquitin-protein ligase COP1 OS=Morus notabilis OX=981085 GN=L484_015775 PE=...	[more]

BLAST of Cla97C11G206490.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23730.1	7.5e-11	36.36	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G52250.1	3.7e-10	38.24	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 4..115 e-value: 9.0E-7 score: 30.1
None	No IPR available	PANTHER	PTHR45389:SF1	WD REPEAT-CONTAINING PROTEIN RUP1	coord: 4..103
IPR044616	WD repeat-containing protein RUP1/2	PANTHER	PTHR45389	WD REPEAT-CONTAINING PROTEIN RUP1	coord: 4..103

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C11G206490	Cla97C11G206490	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C11G206490.1-exon	Cla97C11G206490.1-exon-Cla97Chr11:197091..197447	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C11G206490.1-cds	Cla97C11G206490.1-cds-Cla97Chr11:197091..197447	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C11G206490.1	Cla97C11G206490.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding