Cla97C09G178360.2 (mRNA) Watermelon (97103) v2.5

Overview
NameCla97C09G178360.2
TypemRNA
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
LocationCla97Chr09: 30780415 .. 30782928 (-)
Sequence length1047
RNA-Seq ExpressionCla97C09G178360.2
SyntenyCla97C09G178360.2
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCTTCAGATTGCTATCGGTGAGGGCACAAGCACTGGCCTGGACTACTTAATTGGAGCGATGAGTTTTGAAGAAGGATCGAGTAGTGGAGTTTTAAGCTCGATAGCTATTCATGAGGTAAATCCTCAATATGAGATTTGGATCACAATGGACTAGCTTCTGCTTGGCTGGATATACAATTCGATGACCCCTGAAGTGGCAGTTTAAGTTATGGGTTGCGAATGTGCTAAAGACCTTTGGAACAGTATTCAAAGGTTGTTTGGTGTTCAGTCAAGGGTTGAAGAAGACGATCTTCGCCAAGTGTTTCAATCGACTCGAAAAGGTAACTAAAAAATGGAAGAATATTTATGTATTATGAAGACTAATTCTGATAACCTTGAGCAAGCCAGTAGTCTGGTCCCTATAAGTTCTTTGGTGTCATAGGTTTTATTAGGATTTGATGAAGAGTATAATGCAGTTATTGCAATGATTCAAGAGAAAGGAGCCATCTTGGTTTGATATGCAGTCTGAGCTTCTACTGTATGAAAAGCAGTTAGAGCATCAGACAACCTAGAAAAACTCAGTTGGATTTAATCATAATGCTATAGTCAATATGGCTAATACCAGGGGACCTCAAAACAATGGAGCTAATCAGAATGGACAGAAGCCTGGTAATGGTGGCAATCATAATTCAAATGGAGCACATAGAGGAGGTGGAAATTTCAGAGGCGTGGAAGAGGCAAAGGTAATAAACCTACATGCCAGGTATGTGGAAAAATAGGGCACACTACCTATTACTGTTACAACAAATATAATAAAGAATTTGCACCACCTAATGCCTTCCAGAATAAAGGAGGAAATTTTAATTCATCCCAAACCTGAAGAAATTCCTATAATCCTTCTGCTTTAGCCACCACTCAAGCTTCAAATGCATTTTTAGCCAGTCTTGAGATTGTTGCATATGCCAATTGGTATGCAGACAGTGGAGTATCAAACCATGTAACAACAGACTATAACAATCTGGTCAATGCCACTAAGTATGCAAGTAATGAATCTGTGGTTGTTGCTAATGGTGAGAGTCTTAATATTTCACATATAGGGGATGGTTGTCTGGTTGCTGGTGAAAATAAGTTGAAATTAGATAATATGTTGTGTGTACCTACTATAGCTAAAAATCTTGTGAGCATATCTAGACTTACTAAAGACAATAATGTGTTTATTAACTTTCATGATGGTTACTATCTTATTAAGGACAAGGGTATGAGCCAAACCATATGAAGGGGCAGTTTGAAGGTGGACTTTATCAGCTGAAGGAAGTAGGAGTCAGTTCAAAGAAGAGTTTCATTGGATGCTCCATACAGTTGTAGCCAGTGGGAAAAAATAAAAATTAGTTTGCCCTTGTGTTATCTAACTCATGTTCTTCTGTTAGTAAAAAGATGTCCAAGACAGTTTGGCATAGATGTCTTGGTCACCATTCTATGCGAATACTTGAATATGTTTTAAAAAGTTGTAGTCTCCCTTATGTTAATGAAAAAGTTGAGTTTTGTGATTCTTGTCGATATGGAAAAGCACACTCTGTTGCATTCCCTAACTCTAACTCAAGGGTTACTAAGTTGTTTGATGTTGTATACTGATTTGTGGGACCCCGCACCAATTCTGTTGTCTGAAGGCTATAGATATTATGTTACTTTTGTTGATGATTTTAATGGATCTATCCTCTACGATTAAAAAGCGATACTCTAGTAGCATACCAGCACTTCACCACTATGATTAAAACACAGTTTGAAGGGGTTGTCAAAGTGCTTCAATTTGACAATTGAGGTGAATATGTTCGAGTTCATCAATTCTGCAAACAACAGTGTACTATCTCAAGGTTTTCATGTCCTTATACATCTGCCCAAAATGGGATAGATGAACGTAAGCATAGACATCTGGTGGATTTGGTTTCACATTGCTTGCTCAAGCTTTCTTACGATTACATCTCTGGTGGGATGCATTCGTATATGCAACTTTTCTCATAAATGGTATGCCAACTCCGGTTCTAAGAGGTAAGTCTCCTATTGAAATTGTATCTAATAAGAAGCTGAACTTTTCAAATTTGAAGATATTTGGATGCGCATGTTTTCCTTGTCTGAGGCGGTATAATGATCATAAAATGAGCTACCGTACTGAGAAATGTGTTTATTTGGGGCCAAGTATATGTCACAAAGGATATAAATGCTTAAGTCAGTTAGGTAGAGTATTTATCTCTAGACATGTTGTATTTAATGAATATGATTTTCCATATAAGTCCAATTTTGCAGTGGACATGACAGCAACAACCAGTGCACAAAAGCCTTCACCAACTCAATGGCTATCTTTACCTCCCACTATAATAACATCACAACACAAAACCATCTTCCAAACCCCACCACTCCTATCCCAAACAATACAAGTGATCCTTACACTATAGACATACCTTTAACTCCAGAAAACAATCCTCAACCCTCACCTTCCAACCCTATTGAACAGAACCACCTTCTTCTAGCATGA

mRNA sequence

ATGTTTCTTCAGATTGCTATCGGTGAGGGCACAAGCACTGGCCTGGACTACTTAATTGGAGCGATGAGTTTTGAAGAAGGATCGAGTAGTGGAGTTTTAAGCTCGATAGCTATTCATGAGTTTAAGTTATGGGTTGCGAATGTGCTAAAGACCTTTGGAACAGTATTCAAAGGTTGTTTGGTGTTCAGTCAAGGGTTGAAGAAGACGATCTTCGCCAAGTGTTTCAATCGACTCGAAAAGAGAAAGGAGCCATCTTGGTTTGATATGCAGTCTGAGCTTCTACTGGGACCTCAAAACAATGGAGCTAATCAGAATGGACAGAAGCCTGGTAATGGTGGCAATCATAATTCAAATGGAGCACATAGAGGAGGTGGAAATTTCAGAGGCGTGGAAGAGGCAAAGGTAATAAACCTACATGCCAGAAATTCCTATAATCCTTCTGCTTTAGCCACCACTCAAGCTTCAAATGCATTTTTAGCCAGTCTTGAGATTGTTGCATATGCCAATTGGTATGCAGACAGTGGAGTATCAAACCATGTAACAACAGACTATAACAATCTGGTCAATGCCACTAAGTATGCAAGTAATGAATCTGTGGTTGTTGCTAATGGACAAGGGTATGAGCCAAACCATATGAAGGGGCAGTTTGAAGGTGGACTTTATCAGCTGAAGGAAGTAGGAATGAACGTAAGCATAGACATCTGGTGGATTTGGTTTCACATTGCTTGCTCAAGCTTTCTTACGATTACATCTCTGGTGGGATGCATTCGTATATGCAACTTTTCTCATAAATGGTATGCCAACTCCGGTTCTAAGAGTGGACATGACAGCAACAACCAGTGCACAAAAGCCTTCACCAACTCAATGGCTATCTTTACCTCCCACTATAATAACATCACAACACAAAACCATCTTCCAAACCCCACCACTCCTATCCCAAACAATACAAGTGATCCTTACACTATAGACATACCTTTAACTCCAGAAAACAATCCTCAACCCTCACCTTCCAACCCTATTGAACAGAACCACCTTCTTCTAGCATGA

Coding sequence (CDS)

ATGTTTCTTCAGATTGCTATCGGTGAGGGCACAAGCACTGGCCTGGACTACTTAATTGGAGCGATGAGTTTTGAAGAAGGATCGAGTAGTGGAGTTTTAAGCTCGATAGCTATTCATGAGTTTAAGTTATGGGTTGCGAATGTGCTAAAGACCTTTGGAACAGTATTCAAAGGTTGTTTGGTGTTCAGTCAAGGGTTGAAGAAGACGATCTTCGCCAAGTGTTTCAATCGACTCGAAAAGAGAAAGGAGCCATCTTGGTTTGATATGCAGTCTGAGCTTCTACTGGGACCTCAAAACAATGGAGCTAATCAGAATGGACAGAAGCCTGGTAATGGTGGCAATCATAATTCAAATGGAGCACATAGAGGAGGTGGAAATTTCAGAGGCGTGGAAGAGGCAAAGGTAATAAACCTACATGCCAGAAATTCCTATAATCCTTCTGCTTTAGCCACCACTCAAGCTTCAAATGCATTTTTAGCCAGTCTTGAGATTGTTGCATATGCCAATTGGTATGCAGACAGTGGAGTATCAAACCATGTAACAACAGACTATAACAATCTGGTCAATGCCACTAAGTATGCAAGTAATGAATCTGTGGTTGTTGCTAATGGACAAGGGTATGAGCCAAACCATATGAAGGGGCAGTTTGAAGGTGGACTTTATCAGCTGAAGGAAGTAGGAATGAACGTAAGCATAGACATCTGGTGGATTTGGTTTCACATTGCTTGCTCAAGCTTTCTTACGATTACATCTCTGGTGGGATGCATTCGTATATGCAACTTTTCTCATAAATGGTATGCCAACTCCGGTTCTAAGAGTGGACATGACAGCAACAACCAGTGCACAAAAGCCTTCACCAACTCAATGGCTATCTTTACCTCCCACTATAATAACATCACAACACAAAACCATCTTCCAAACCCCACCACTCCTATCCCAAACAATACAAGTGATCCTTACACTATAGACATACCTTTAACTCCAGAAAACAATCCTCAACCCTCACCTTCCAACCCTATTGAACAGAACCACCTTCTTCTAGCATGA

Protein sequence

MFLQIAIGEGTSTGLDYLIGAMSFEEGSSSGVLSSIAIHEFKLWVANVLKTFGTVFKGCLVFSQGLKKTIFAKCFNRLEKRKEPSWFDMQSELLLGPQNNGANQNGQKPGNGGNHNSNGAHRGGGNFRGVEEAKVINLHARNSYNPSALATTQASNAFLASLEIVAYANWYADSGVSNHVTTDYNNLVNATKYASNESVVVANGQGYEPNHMKGQFEGGLYQLKEVGMNVSIDIWWIWFHIACSSFLTITSLVGCIRICNFSHKWYANSGSKSGHDSNNQCTKAFTNSMAIFTSHYNNITTQNHLPNPTTPIPNNTSDPYTIDIPLTPENNPQPSPSNPIEQNHLLLA
Homology
BLAST of Cla97C09G178360.2 vs. NCBI nr
Match: XP_016901889.1 (PREDICTED: uncharacterized protein LOC107991455 [Cucumis melo])

HSP 1 Score: 62.4 bits (150), Expect = 9.0e-06
Identity = 39/76 (51.32%), Postives = 47/76 (61.84%), Query Frame = 0

Query: 142 NSY-NPSALATTQASNAFLASLEIVAYANWYADSGVSNHVTTDYNNLVNATKYASNESVV 201
           NSY NP+A  TTQ +N F A  EIV  +NWY DSG +N+VT DY NL N T+Y+S E   
Sbjct: 41  NSYQNPTAFVTTQNNNPF-AMQEIVVDSNWYVDSGATNYVTLDYLNLSNITEYSSIEHFS 100

Query: 202 VANGQGYEPNHMKGQF 217
           V NG   +  H  G F
Sbjct: 101 VGNGNKLQ-IHCVGNF 114

BLAST of Cla97C09G178360.2 vs. NCBI nr
Match: KAA0036141.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa] >TYK13500.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-05
Identity = 52/168 (30.95%), Postives = 76/168 (45.24%), Query Frame = 0

Query: 79  EKRKEPSWFDMQSELLLGPQNNGANQNGQKPGNGGNHNSNGAHRGGGNFRGVEEAKVINL 138
           +++ + SW DMQSELL+  +    +QN  K   G     + +++                
Sbjct: 90  QEKPDISWLDMQSELLIF-EKRLEHQNSNKKSKGHTFTPSNSNQ---------------- 149

Query: 139 HARNSYNPSALATTQASNAFLASLEIVAYANWYADSGVSNHVTTDYNNLVNATKYASNES 198
                 N +A  TT  SN+F+   E V  +NWY D+G +NHVT DY+NL N  KY+  E 
Sbjct: 150 ------NLTAFVTTYNSNSFVTP-ETVIDSNWYVDNGATNHVTADYSNLSNPLKYSGIEH 209

Query: 199 VVVANGQG---YEPNH---------------MKGQFEGGLYQLKEVGM 229
           V+V N Q    Y   H               M+G  + GLY L+ V +
Sbjct: 210 VIVGNAQDNNVYLEFHGDYCFVNNKDTGRTIMRGVLKDGLYHLESVAV 233

BLAST of Cla97C09G178360.2 vs. NCBI nr
Match: TYK02246.1 (uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 3.4e-05
Identity = 61/224 (27.23%), Postives = 98/224 (43.75%), Query Frame = 0

Query: 2   FLQIAIGEGTSTGLDYLIGAMSFEEGSSSGVLSSIAIH-EFKLWVANVLKTFGTVFKGCL 61
           F+   IGE  S     + G     +G+SS   ++  ++ +F  W+ + L   G ++    
Sbjct: 67  FITNQIGESQSE----IDGTAEATDGASSRSTATKTVNPKFDQWLTSYLLLLGWIYN--- 126

Query: 62  VFSQGLKKTIFAKCFNRLEKRKEPSWFDMQSELLLGPQNNGANQNGQKPGNGGNHNSNGA 121
             S   +     K FN  +   E +  D+     +    N AN + ++PGN   HNSN +
Sbjct: 127 --SMTAEVAFQLKGFNTAKDLWE-AIQDLFGNATVNMVQNRANNDARQPGNSYPHNSNSS 186

Query: 122 HRGGGNFRGVEEAKVINLHARNSYNPSALATTQASNAFLASLEIVAYANWYADSGVSNHV 181
           +  G         + + + A    N    A              V  +NWY DSG +NHV
Sbjct: 187 NGNGQQVVTTSITRAVVVVAEEEINQRVKA--------------VIDSNWYVDSGATNHV 246

Query: 182 TTDYNNLVNATKYASNESVVVANGQGYEPNHMKGQFEGGLYQLK 225
           T DY+NL NA++Y+  E V+V N Q    N++  +F G  Y +K
Sbjct: 247 TADYSNLSNASEYSGIEHVIVGNAQ---DNNVYLEFHGDHYFVK 263

BLAST of Cla97C09G178360.2 vs. NCBI nr
Match: RVW41150.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 59.3 bits (142), Expect = 7.6e-05
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 0

Query: 159 LASLEIVAYANWYADSGVSNHVTTDYNNLVNATKYASNESVVVANGQGYEPNHMKGQFEG 218
           +A+ E +   NWY DSG SNHVTT+ NNLV  T Y  NE V V N Q  +   ++G+ +G
Sbjct: 335 MATPENICDTNWYPDSGASNHVTTNANNLVEHTPYYGNEQVRVGNDQVSKIVVLEGKLKG 394

Query: 219 GLY 222
           GLY
Sbjct: 395 GLY 397

BLAST of Cla97C09G178360.2 vs. NCBI nr
Match: CAN60188.1 (hypothetical protein VITISV_002117 [Vitis vinifera])

HSP 1 Score: 59.3 bits (142), Expect = 7.6e-05
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 0

Query: 159 LASLEIVAYANWYADSGVSNHVTTDYNNLVNATKYASNESVVVANGQGYEPNHMKGQFEG 218
           +A+ E +   NWY DSG SNHVTT+ NNLV  T Y  NE V V N Q  +   ++G+ +G
Sbjct: 335 MATPENICDTNWYPDSGASNHVTTNANNLVEHTPYYGNEQVRVGNDQVSKIVVLEGKLKG 394

Query: 219 GLY 222
           GLY
Sbjct: 395 GLY 397

BLAST of Cla97C09G178360.2 vs. ExPASy TrEMBL
Match: A0A1S4E0Z3 (uncharacterized protein LOC107991455 OS=Cucumis melo OX=3656 GN=LOC107991455 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.3e-06
Identity = 39/76 (51.32%), Postives = 47/76 (61.84%), Query Frame = 0

Query: 142 NSY-NPSALATTQASNAFLASLEIVAYANWYADSGVSNHVTTDYNNLVNATKYASNESVV 201
           NSY NP+A  TTQ +N F A  EIV  +NWY DSG +N+VT DY NL N T+Y+S E   
Sbjct: 41  NSYQNPTAFVTTQNNNPF-AMQEIVVDSNWYVDSGATNYVTLDYLNLSNITEYSSIEHFS 100

Query: 202 VANGQGYEPNHMKGQF 217
           V NG   +  H  G F
Sbjct: 101 VGNGNKLQ-IHCVGNF 114

BLAST of Cla97C09G178360.2 vs. ExPASy TrEMBL
Match: A0A5D3CPY2 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold90G00160 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.7e-06
Identity = 52/168 (30.95%), Postives = 76/168 (45.24%), Query Frame = 0

Query: 79  EKRKEPSWFDMQSELLLGPQNNGANQNGQKPGNGGNHNSNGAHRGGGNFRGVEEAKVINL 138
           +++ + SW DMQSELL+  +    +QN  K   G     + +++                
Sbjct: 90  QEKPDISWLDMQSELLIF-EKRLEHQNSNKKSKGHTFTPSNSNQ---------------- 149

Query: 139 HARNSYNPSALATTQASNAFLASLEIVAYANWYADSGVSNHVTTDYNNLVNATKYASNES 198
                 N +A  TT  SN+F+   E V  +NWY D+G +NHVT DY+NL N  KY+  E 
Sbjct: 150 ------NLTAFVTTYNSNSFVTP-ETVIDSNWYVDNGATNHVTADYSNLSNPLKYSGIEH 209

Query: 199 VVVANGQG---YEPNH---------------MKGQFEGGLYQLKEVGM 229
           V+V N Q    Y   H               M+G  + GLY L+ V +
Sbjct: 210 VIVGNAQDNNVYLEFHGDYCFVNNKDTGRTIMRGVLKDGLYHLESVAV 233

BLAST of Cla97C09G178360.2 vs. ExPASy TrEMBL
Match: A0A5D3BVJ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00450 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-05
Identity = 61/224 (27.23%), Postives = 98/224 (43.75%), Query Frame = 0

Query: 2   FLQIAIGEGTSTGLDYLIGAMSFEEGSSSGVLSSIAIH-EFKLWVANVLKTFGTVFKGCL 61
           F+   IGE  S     + G     +G+SS   ++  ++ +F  W+ + L   G ++    
Sbjct: 67  FITNQIGESQSE----IDGTAEATDGASSRSTATKTVNPKFDQWLTSYLLLLGWIYN--- 126

Query: 62  VFSQGLKKTIFAKCFNRLEKRKEPSWFDMQSELLLGPQNNGANQNGQKPGNGGNHNSNGA 121
             S   +     K FN  +   E +  D+     +    N AN + ++PGN   HNSN +
Sbjct: 127 --SMTAEVAFQLKGFNTAKDLWE-AIQDLFGNATVNMVQNRANNDARQPGNSYPHNSNSS 186

Query: 122 HRGGGNFRGVEEAKVINLHARNSYNPSALATTQASNAFLASLEIVAYANWYADSGVSNHV 181
           +  G         + + + A    N    A              V  +NWY DSG +NHV
Sbjct: 187 NGNGQQVVTTSITRAVVVVAEEEINQRVKA--------------VIDSNWYVDSGATNHV 246

Query: 182 TTDYNNLVNATKYASNESVVVANGQGYEPNHMKGQFEGGLYQLK 225
           T DY+NL NA++Y+  E V+V N Q    N++  +F G  Y +K
Sbjct: 247 TADYSNLSNASEYSGIEHVIVGNAQ---DNNVYLEFHGDHYFVK 263

BLAST of Cla97C09G178360.2 vs. ExPASy TrEMBL
Match: A0A438E0F0 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2040 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-05
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 0

Query: 159 LASLEIVAYANWYADSGVSNHVTTDYNNLVNATKYASNESVVVANGQGYEPNHMKGQFEG 218
           +A+ E +   NWY DSG SNHVTT+ NNLV  T Y  NE V V N Q  +   ++G+ +G
Sbjct: 335 MATPENICDTNWYPDSGASNHVTTNANNLVEHTPYYGNEQVRVGNDQVSKIVVLEGKLKG 394

Query: 219 GLY 222
           GLY
Sbjct: 395 GLY 397

BLAST of Cla97C09G178360.2 vs. ExPASy TrEMBL
Match: A5AG09 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_002117 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-05
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 0

Query: 159 LASLEIVAYANWYADSGVSNHVTTDYNNLVNATKYASNESVVVANGQGYEPNHMKGQFEG 218
           +A+ E +   NWY DSG SNHVTT+ NNLV  T Y  NE V V N Q  +   ++G+ +G
Sbjct: 335 MATPENICDTNWYPDSGASNHVTTNANNLVEHTPYYGNEQVRVGNDQVSKIVVLEGKLKG 394

Query: 219 GLY 222
           GLY
Sbjct: 395 GLY 397

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_016901889.19.0e-0651.32PREDICTED: uncharacterized protein LOC107991455 [Cucumis melo][more]
KAA0036141.12.0e-0530.95retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]... [more]
TYK02246.13.4e-0527.23uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa][more]
RVW41150.17.6e-0549.21Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera][more]
CAN60188.17.6e-0549.21hypothetical protein VITISV_002117 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S4E0Z34.3e-0651.32uncharacterized protein LOC107991455 OS=Cucumis melo OX=3656 GN=LOC107991455 PE=... [more]
A0A5D3CPY29.7e-0630.95Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw... [more]
A0A5D3BVJ11.6e-0527.23Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A438E0F03.7e-0549.21Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... [more]
A5AG093.7e-0549.21Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 302..348
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..121
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 302..328

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla97C09G178360Cla97C09G178360gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C09G178360.2-exonCla97C09G178360.2-exon-Cla97Chr09:30780415..30780643exon
Cla97C09G178360.2-exonCla97C09G178360.2-exon-Cla97Chr09:30780899..30781035exon
Cla97C09G178360.2-exonCla97C09G178360.2-exon-Cla97Chr09:30781625..30781695exon
Cla97C09G178360.2-exonCla97C09G178360.2-exon-Cla97Chr09:30781875..30782062exon
Cla97C09G178360.2-exonCla97C09G178360.2-exon-Cla97Chr09:30782182..30782319exon
Cla97C09G178360.2-exonCla97C09G178360.2-exon-Cla97Chr09:30782407..30782450exon
Cla97C09G178360.2-exonCla97C09G178360.2-exon-Cla97Chr09:30782604..30782723exon
Cla97C09G178360.2-exonCla97C09G178360.2-exon-Cla97Chr09:30782809..30782928exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C09G178360.2-cdsCla97C09G178360.2-cds-Cla97Chr09:30780415..30780643CDS
Cla97C09G178360.2-cdsCla97C09G178360.2-cds-Cla97Chr09:30780899..30781035CDS
Cla97C09G178360.2-cdsCla97C09G178360.2-cds-Cla97Chr09:30781625..30781695CDS
Cla97C09G178360.2-cdsCla97C09G178360.2-cds-Cla97Chr09:30781875..30782062CDS
Cla97C09G178360.2-cdsCla97C09G178360.2-cds-Cla97Chr09:30782182..30782319CDS
Cla97C09G178360.2-cdsCla97C09G178360.2-cds-Cla97Chr09:30782407..30782450CDS
Cla97C09G178360.2-cdsCla97C09G178360.2-cds-Cla97Chr09:30782604..30782723CDS
Cla97C09G178360.2-cdsCla97C09G178360.2-cds-Cla97Chr09:30782809..30782928CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla97C09G178360.2Cla97C09G178360.2-proteinpolypeptide