Cla97C09G178180.1 (mRNA) Watermelon (97103) v2.5

Overview
NameCla97C09G178180.1
TypemRNA
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionCysteine-rich and transmembrane domain-containing protein A-like
LocationCla97Chr09: 30450333 .. 30450999 (+)
Sequence length372
RNA-Seq ExpressionCla97C09G178180.1
SyntenyCla97C09G178180.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGATCCCAAATATGCCTATCCCTATCCACCTCCTCAAGGTATGTTTTTTACCTATTTATTTATGTTTAAACGGTTGAGCTATATTCAAGTTGAGTTTTGTTTGATTTAGTATTTTGGGTGTTGTGAATATATTTATTTGCAGGAGGGCCCCTTGTGATGGCGCCACCGCAATACGCCGCCCCGCCGCCCAAAAAAAACCAGGCTTCTTGGAGGGATGGTATGCCAAAAAGCTTGTTATTTGTTGATAAACTCTAGCTTTGTTGAATGGCTTTGGTTTCTGCTTGCATATATCAAAACCAGGCTTCCAGGAACGGCATCTAGACGCTACAAACTTTAGACTACATCTTTGCTTTTCCTTGTATGTTTCTTAGTCTATGGCTAACAGAGGGTTTAATTTTGTGTTTTCAGCCTTACAGCTCTGTGTTGCTGCTGTCTTGATCTTGATGAGTGTTGCTGTGACGGCCCTTCCATTATCTGTATTACTTCATCTAACCTTTGCTTGCCTTTGTAGCTCTAAATTGGCTTTTTTACTTCATCATACAAAATTCAAGACTTGTTTTTCCTTCCTTGGGAGTGGTTTGATTTTGTGTGAGCTACAAGTCCATCCTAAGGTTTTATACTTTTCTTTAGACATCCAATTTGAAAGAAGAAGGTACAAGTGA

mRNA sequence

ATGAGTGATCCCAAATATGCCTATCCCTATCCACCTCCTCAAGGAGGGCCCCTTGTGATGGCGCCACCGCAATACGCCGCCCCGCCGCCCAAAAAAAACCAGGCTTCTTGGAGGGATGCCTTACAGCTCTGTGTTGCTGCTGTCTTGATCTTGATGAGTGTTGCTGTGACGGCCCTTCCATTATCTGTATTACTTCATCTAACCTTTGCTTGCCTTTGTAGCTCTAAATTGGCTTTTTTACTTCATCATACAAAATTCAAGACTTGTTTTTCCTTCCTTGGGAGTGGTTTGATTTTGTGTGAGCTACAAGTCCATCCTAAGGTTTTATACTTTTCTTTAGACATCCAATTTGAAAGAAGAAGGTACAAGTGA

Coding sequence (CDS)

ATGAGTGATCCCAAATATGCCTATCCCTATCCACCTCCTCAAGGAGGGCCCCTTGTGATGGCGCCACCGCAATACGCCGCCCCGCCGCCCAAAAAAAACCAGGCTTCTTGGAGGGATGCCTTACAGCTCTGTGTTGCTGCTGTCTTGATCTTGATGAGTGTTGCTGTGACGGCCCTTCCATTATCTGTATTACTTCATCTAACCTTTGCTTGCCTTTGTAGCTCTAAATTGGCTTTTTTACTTCATCATACAAAATTCAAGACTTGTTTTTCCTTCCTTGGGAGTGGTTTGATTTTGTGTGAGCTACAAGTCCATCCTAAGGTTTTATACTTTTCTTTAGACATCCAATTTGAAAGAAGAAGGTACAAGTGA

Protein sequence

MSDPKYAYPYPPPQGGPLVMAPPQYAAPPPKKNQASWRDALQLCVAAVLILMSVAVTALPLSVLLHLTFACLCSSKLAFLLHHTKFKTCFSFLGSGLILCELQVHPKVLYFSLDIQFERRRYK
Homology
BLAST of Cla97C09G178180.1 vs. NCBI nr
Match: KGN43811.1 (hypothetical protein Csa_017361 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 2.2e-07
Identity = 47/69 (68.12%), Postives = 51/69 (73.91%), Query Frame = 0

Query: 1  MSDPKYAYPYPPPQG----GPLVMAPPQYAAPPPKKNQASWRDALQLCVAAVLILMSVAV 60
          MSDPKYAYPYPPPQG    GP VMAPPQYAAPPP++     + ALQL  AAV  LM+ AV
Sbjct: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRR-----QPALQLYAAAV-SLMNAAV 60

Query: 61 TALPLSVLL 66
          T LPLS LL
Sbjct: 61 T-LPLSFLL 62

BLAST of Cla97C09G178180.1 vs. NCBI nr
Match: KAA0031406.1 (cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo var. makuwa] >TYK06857.1 cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-05
Identity = 55/114 (48.25%), Postives = 61/114 (53.51%), Query Frame = 0

Query: 1   MSDPKYAYPYPPPQG----GPLVMAPPQYAAPPPKKN------------QASWRD----- 60
           MSDPKYAYPYPPPQG    GP VMAPPQYAAPPPK+             +  W +     
Sbjct: 1   MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWFGFPVRLVWLNRGFNF 60

Query: 61  ---ALQLCVAAVLILMSVAVTALPLSVLL---------HLTFACLCSSKLAFLL 82
              ALQL  AAV  LM+ AVT LPLS LL          +   CL S   +FLL
Sbjct: 61  VFAALQLYAAAV-SLMNAAVT-LPLSFLLDAMRDFFIAFVAVNCLISFLFSFLL 112

BLAST of Cla97C09G178180.1 vs. NCBI nr
Match: KAG6571885.1 (hypothetical protein SDJN03_28613, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011569.1 hypothetical protein SDJN02_26475 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-04
Identity = 33/52 (63.46%), Postives = 37/52 (71.15%), Query Frame = 0

Query: 1  MSDPKYAYPYPPPQG----GPLVMAPPQYAAPPPKKNQASWRDALQLCVAAV 49
          MSDPKYAYPYPPP G    GP VMAPPQYAAPPPK+        L+ C+AA+
Sbjct: 1  MSDPKYAYPYPPPPGGYYQGPPVMAPPQYAAPPPKRQPG----FLEGCLAAL 48

BLAST of Cla97C09G178180.1 vs. NCBI nr
Match: KAG8497388.1 (hypothetical protein CXB51_008632 [Gossypium anomalum])

HSP 1 Score: 54.3 bits (129), Expect = 8.6e-04
Identity = 39/59 (66.10%), Postives = 42/59 (71.19%), Query Frame = 0

Query: 1  MSDPKYAYPYPPPQG---GPLVMAPPQYAAPPPKKNQASWRDALQLCVAAVLILMSVAV 57
          MSDPKYAYPY P QG   GP VMAPPQYAAPPP++        LQL VA VL LM+VAV
Sbjct: 1  MSDPKYAYPY-PAQGYYQGPPVMAPPQYAAPPPRR-----EPVLQLYVAVVL-LMNVAV 52

BLAST of Cla97C09G178180.1 vs. ExPASy TrEMBL
Match: A0A0A0K7L8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G069130 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-07
Identity = 47/69 (68.12%), Postives = 51/69 (73.91%), Query Frame = 0

Query: 1  MSDPKYAYPYPPPQG----GPLVMAPPQYAAPPPKKNQASWRDALQLCVAAVLILMSVAV 60
          MSDPKYAYPYPPPQG    GP VMAPPQYAAPPP++     + ALQL  AAV  LM+ AV
Sbjct: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRR-----QPALQLYAAAV-SLMNAAV 60

Query: 61 TALPLSVLL 66
          T LPLS LL
Sbjct: 61 T-LPLSFLL 62

BLAST of Cla97C09G178180.1 vs. ExPASy TrEMBL
Match: A0A5A7SN04 (Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001610 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 9.9e-06
Identity = 55/114 (48.25%), Postives = 61/114 (53.51%), Query Frame = 0

Query: 1   MSDPKYAYPYPPPQG----GPLVMAPPQYAAPPPKKN------------QASWRD----- 60
           MSDPKYAYPYPPPQG    GP VMAPPQYAAPPPK+             +  W +     
Sbjct: 1   MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWFGFPVRLVWLNRGFNF 60

Query: 61  ---ALQLCVAAVLILMSVAVTALPLSVLL---------HLTFACLCSSKLAFLL 82
              ALQL  AAV  LM+ AVT LPLS LL          +   CL S   +FLL
Sbjct: 61  VFAALQLYAAAV-SLMNAAVT-LPLSFLLDAMRDFFIAFVAVNCLISFLFSFLL 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN43811.12.2e-0768.12hypothetical protein Csa_017361 [Cucumis sativus][more]
KAA0031406.12.1e-0548.25cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo v... [more]
KAG6571885.11.3e-0463.46hypothetical protein SDJN03_28613, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG8497388.18.6e-0466.10hypothetical protein CXB51_008632 [Gossypium anomalum][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K7L81.1e-0768.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G069130 PE=4 SV=1[more]
A0A5A7SN049.9e-0648.25Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo... [more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla97C09G178180Cla97C09G178180gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C09G178180.1-exonCla97C09G178180.1-exon-Cla97Chr09:30450333..30450375exon
Cla97C09G178180.1-exonCla97C09G178180.1-exon-Cla97Chr09:30450480..30450554exon
Cla97C09G178180.1-exonCla97C09G178180.1-exon-Cla97Chr09:30450746..30450999exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C09G178180.1-cdsCla97C09G178180.1-cds-Cla97Chr09:30450333..30450375CDS
Cla97C09G178180.1-cdsCla97C09G178180.1-cds-Cla97Chr09:30450480..30450554CDS
Cla97C09G178180.1-cdsCla97C09G178180.1-cds-Cla97Chr09:30450746..30450999CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla97C09G178180.1Cla97C09G178180.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005886 plasma membrane