Cla97C08G161030.1 (mRNA) Watermelon (97103) v2.5

Overview


Name	Cla97C08G161030.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	NADH-ubiquinone reductase complex 1 MLRQ subunit
Location	Cla97Chr08: 27710847 .. 27711361 (+)
Sequence length	270
RNA-Seq Expression	Cla97C08G161030.1
Synteny	Cla97C08G161030.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCACCGCTAACAGATGGTTAAAGCCGGAGGTTTCTTTTTTATGCCTTTCATTTTCTATTACTTTCTGTTTGGCTGCTAAGAAAAAACATTAAGAAAACAACGAATTTACCATTCAAAACTTGATTTCCTTGAATACATATGCAGGTGTATCCTCTCTTTGCTGCAGTTGGTGTGGCTGTTGGCATCTGTGGGTTGCAGCTTTTTAGAAACATAACCACCAATCCTGAAGTCAGGTAAATATTTCAAGTTGTAGAAAAAAAATATGTTCAACATAATGTAGAAAAAAAAATGTAAATATTTTGATCAAGAGAAGAGAAGGGGTTAAAAAAAGTGTCCTGATTTGTTCTGAATGGAACATGATAGGGTTATCAAAGAGAAGAGAGCTGCTGGAGTGCTTGACAACTTTGAAGAAGGTGAGAAGTATGCAGAGCATGGTCTTAGGAAGTTCCTCAGAACAAGACCACCTCAGATTATGCCTTCCATCAACAAATTCTTCTCAGATCCAAACTAA

mRNA sequence

ATGCCCACCGCTAACAGATGGTTAAAGCCGGAGGTGTATCCTCTCTTTGCTGCAGTTGGTGTGGCTGTTGGCATCTGTGGGTTGCAGCTTTTTAGAAACATAACCACCAATCCTGAAGTCAGGGTTATCAAAGAGAAGAGAGCTGCTGGAGTGCTTGACAACTTTGAAGAAGGTGAGAAGTATGCAGAGCATGGTCTTAGGAAGTTCCTCAGAACAAGACCACCTCAGATTATGCCTTCCATCAACAAATTCTTCTCAGATCCAAACTAA

Coding sequence (CDS)

ATGCCCACCGCTAACAGATGGTTAAAGCCGGAGGTGTATCCTCTCTTTGCTGCAGTTGGTGTGGCTGTTGGCATCTGTGGGTTGCAGCTTTTTAGAAACATAACCACCAATCCTGAAGTCAGGGTTATCAAAGAGAAGAGAGCTGCTGGAGTGCTTGACAACTTTGAAGAAGGTGAGAAGTATGCAGAGCATGGTCTTAGGAAGTTCCTCAGAACAAGACCACCTCAGATTATGCCTTCCATCAACAAATTCTTCTCAGATCCAAACTAA

Protein sequence

MPTANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEKYAEHGLRKFLRTRPPQIMPSINKFFSDPN

Homology

[Close]

BLAST of Cla97C08G161030.1 vs. NCBI nr
Match: KAG6598267.1 (hypothetical protein SDJN03_08045, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 180.6 bits (457), Expect = 5.8e-42
Identity = 84/89 (94.38%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MPTANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEK 60
          MPTANRWLKPEVYPLFA VGVAVGICG+QL RNITTNPEVRV KE+RAAGVLDNFEEGEK
Sbjct: 1  MPTANRWLKPEVYPLFATVGVAVGICGMQLVRNITTNPEVRVTKERRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of Cla97C08G161030.1 vs. NCBI nr
Match: XP_038885463.1 (uncharacterized protein LOC120075838 [Benincasa hispida])

HSP 1 Score: 177.9 bits (450), Expect = 3.7e-41
Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MPTANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEK 60
          M +ANRWLKPEVYPLFAAVGVAVGICG+QL RNITTNPEVRVIKEKR AGVLDN+EEGEK
Sbjct: 1  MASANRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRTAGVLDNYEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of Cla97C08G161030.1 vs. NCBI nr
Match: XP_004142944.1 (uncharacterized protein LOC101222643 [Cucumis sativus] >KGN62359.1 hypothetical protein Csa_018775 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 4.9e-41
Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MPTANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEK 60
          M TANRWLKPEVYPLFA+VGVAVGIC +QL RNITTNPEVRVIKE+RAAGVLDNFEEGEK
Sbjct: 1  MATANRWLKPEVYPLFASVGVAVGICAMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of Cla97C08G161030.1 vs. NCBI nr
Match: XP_022961943.1 (uncharacterized protein LOC111462563 [Cucurbita moschata])

HSP 1 Score: 177.6 bits (449), Expect = 4.9e-41
Identity = 83/89 (93.26%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1  MPTANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEK 60
          M TANRWLKPEVYPLFA VGVAVGICG+QL RNITTNPEVRV KE+RAAGVLDNFEEGEK
Sbjct: 1  MATANRWLKPEVYPLFATVGVAVGICGMQLVRNITTNPEVRVTKERRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of Cla97C08G161030.1 vs. NCBI nr
Match: XP_016900034.1 (PREDICTED: uncharacterized protein LOC107990723 [Cucumis melo])

HSP 1 Score: 176.4 bits (446), Expect = 1.1e-40
Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MPTANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEK 60
          M TANRWLKPEVYPLFA+VGVAVGIC +QL RNITTNPEVRVIKE+RAAGVLDNFEEGEK
Sbjct: 1  MATANRWLKPEVYPLFASVGVAVGICVMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of Cla97C08G161030.1 vs. ExPASy TrEMBL
Match: A0A0A0LMX7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350420 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.4e-41
Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MPTANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEK 60
          M TANRWLKPEVYPLFA+VGVAVGIC +QL RNITTNPEVRVIKE+RAAGVLDNFEEGEK
Sbjct: 1  MATANRWLKPEVYPLFASVGVAVGICAMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of Cla97C08G161030.1 vs. ExPASy TrEMBL
Match: A0A6J1HDB5 (uncharacterized protein LOC111462563 OS=Cucurbita moschata OX=3662 GN=LOC111462563 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.4e-41
Identity = 83/89 (93.26%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1  MPTANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEK 60
          M TANRWLKPEVYPLFA VGVAVGICG+QL RNITTNPEVRV KE+RAAGVLDNFEEGEK
Sbjct: 1  MATANRWLKPEVYPLFATVGVAVGICGMQLVRNITTNPEVRVTKERRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of Cla97C08G161030.1 vs. ExPASy TrEMBL
Match: A0A1S4DVM4 (uncharacterized protein LOC107990723 OS=Cucumis melo OX=3656 GN=LOC107990723 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 5.3e-41
Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MPTANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEK 60
          M TANRWLKPEVYPLFA+VGVAVGIC +QL RNITTNPEVRVIKE+RAAGVLDNFEEGEK
Sbjct: 1  MATANRWLKPEVYPLFASVGVAVGICVMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of Cla97C08G161030.1 vs. ExPASy TrEMBL
Match: A0A6J1BUB6 (uncharacterized protein LOC111004829 OS=Momordica charantia OX=3673 GN=LOC111004829 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 9.0e-41
Identity = 83/89 (93.26%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 1  MPTANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEK 60
          M   NRWLKPEVYPLFAAVGVAVGICG+QL RNITTNPEVRVIKEKRAAGVLDNFEEGEK
Sbjct: 1  MAATNRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTR PQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRSPQIMPSINKFFSDPN 89

[Close]

BLAST of Cla97C08G161030.1 vs. ExPASy TrEMBL
Match: A0A6J1KE88 (uncharacterized protein LOC111492441 OS=Cucurbita maxima OX=3661 GN=LOC111492441 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.4e-38
Identity = 78/83 (93.98%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 7   WLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEKYAEHGL 66
           WLKPEVYPLFA VGVAVGICG+QL RNITTNPEVRV KE+RAAGVLDNFEEGEKYAEHGL
Sbjct: 25  WLKPEVYPLFATVGVAVGICGMQLVRNITTNPEVRVTKERRAAGVLDNFEEGEKYAEHGL 84

Query: 67  RKFLRTRPPQIMPSINKFFSDPN 90
           RKFLRTRPPQIMPSINKFFSDPN
Sbjct: 85  RKFLRTRPPQIMPSINKFFSDPN 107

[Close]

BLAST of Cla97C08G161030.1 vs. TAIR 10
Match: AT3G48140.1 (B12D protein )

HSP 1 Score: 133.3 bits (334), Expect = 9.9e-32
Identity = 60/85 (70.59%), Postives = 69/85 (81.18%), Query Frame = 0


Query: 4  ANRWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEKYAE 63
          A+RWL+PEVYPLFAA GVAVGIC   L RNIT NPEVR  KE RAAG+LDN  EGEKY E
Sbjct: 2  ASRWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKE 61

Query: 64 HGLRKFLRTRPPQIMPSINKFFSDP 89
          + LRKF+R + P+IMP +NKFF+DP
Sbjct: 62 NFLRKFVRNKKPEIMPGLNKFFTDP 86

[Close]

BLAST of Cla97C08G161030.1 vs. TAIR 10
Match: AT3G29970.1 (B12D protein )

HSP 1 Score: 105.5 bits (262), Expect = 2.2e-23
Identity = 45/81 (55.56%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 6  RWLKPEVYPLFAAVGVAVGICGLQLFRNITTNPEVRVIKEKRAAGVLDNFEEGEKYAEHG 65
          RW++PEVYPL  A+G    +   QL RN   NP+ R+ KE R  G+L+N +EGEKYA+H 
Sbjct: 3  RWVRPEVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQHN 62

Query: 66 LRKFLRTRPPQIMPSINKFFS 87
           RK+LRTR PQ+MPS+N+FFS
Sbjct: 63 FRKYLRTRQPQVMPSLNRFFS 83

The following BLAST results are available for this feature:

BLAST of Cla97C08G161030.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6598267.1	5.8e-42	94.38	hypothetical protein SDJN03_08045, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038885463.1	3.7e-41	93.26	uncharacterized protein LOC120075838 [Benincasa hispida]	[more]
XP_004142944.1	4.9e-41	93.26	uncharacterized protein LOC101222643 [Cucumis sativus] >KGN62359.1 hypothetical ...	[more]
XP_022961943.1	4.9e-41	93.26	uncharacterized protein LOC111462563 [Cucurbita moschata]	[more]
XP_016900034.1	1.1e-40	93.26	PREDICTED: uncharacterized protein LOC107990723 [Cucumis melo]	[more]

BLAST of Cla97C08G161030.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C08G161030.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMX7	2.4e-41	93.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350420 PE=4 SV=1	[more]
A0A6J1HDB5	2.4e-41	93.26	uncharacterized protein LOC111462563 OS=Cucurbita moschata OX=3662 GN=LOC1114625...	[more]
A0A1S4DVM4	5.3e-41	93.26	uncharacterized protein LOC107990723 OS=Cucumis melo OX=3656 GN=LOC107990723 PE=...	[more]
A0A6J1BUB6	9.0e-41	93.26	uncharacterized protein LOC111004829 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]
A0A6J1KE88	2.4e-38	93.98	uncharacterized protein LOC111492441 OS=Cucurbita maxima OX=3661 GN=LOC111492441...	[more]

BLAST of Cla97C08G161030.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48140.1	9.9e-32	70.59	B12D protein	[more]
AT3G29970.1	2.2e-23	55.56	B12D protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010530	NADH-ubiquinone reductase complex 1 MLRQ subunit	PFAM	PF06522	B12D	coord: 9..76 e-value: 3.3E-24 score: 84.4
None	No IPR available	PANTHER	PTHR33417	G-BOX BINDING PROTEIN	coord: 1..88
None	No IPR available	PANTHER	PTHR33417:SF13	OS07G0274700 PROTEIN	coord: 1..88

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C08G161030	Cla97C08G161030	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C08G161030.1-exon	Cla97C08G161030.1-exon-Cla97Chr08:27710847..27710879	exon
Cla97C08G161030.1-exon	Cla97C08G161030.1-exon-Cla97Chr08:27710995..27711083	exon
Cla97C08G161030.1-exon	Cla97C08G161030.1-exon-Cla97Chr08:27711214..27711361	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C08G161030.1-cds	Cla97C08G161030.1-cds-Cla97Chr08:27710847..27710879	CDS
Cla97C08G161030.1-cds	Cla97C08G161030.1-cds-Cla97Chr08:27710995..27711083	CDS
Cla97C08G161030.1-cds	Cla97C08G161030.1-cds-Cla97Chr08:27711214..27711361	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C08G161030.1	Cla97C08G161030.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane