Cla97C08G146330.1 (mRNA) Watermelon (97103) v2.5

Overview


Name	Cla97C08G146330.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Unknown protein
Location	Cla97Chr08: 4602984 .. 4603283 (+)
Sequence length	300
RNA-Seq Expression	Cla97C08G146330.1
Synteny	Cla97C08G146330.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGCAACTACAGGCAAAAGAATAAGACTCATTCATCCTTCTCCATCTTTAACTTCTTTAAATCAAAAAGAAGTAGGAAAGGAGATCCTTATGAGCATGCTACCAATTGGGAGGAGGTGTCGAGCACAAGTAAGGTGTGGCCGAGCGATGAGGACAAAGGCTTCCGTTGGGTTGCTGAGCCTGGTATCGATCAAAAGGCCAAAGATTACATCGATAGGATTTATAGGAATCATGTCTTTGAAACCGAGCGCCAAACGGTCACTATTCTTCCTAATGGACATAAGTCCAATGTATAA

mRNA sequence

ATGGGAGGCAACTACAGGCAAAAGAATAAGACTCATTCATCCTTCTCCATCTTTAACTTCTTTAAATCAAAAAGAAGTAGGAAAGGAGATCCTTATGAGCATGCTACCAATTGGGAGGAGGTGTCGAGCACAAGTAAGGTGTGGCCGAGCGATGAGGACAAAGGCTTCCGTTGGGTTGCTGAGCCTGGTATCGATCAAAAGGCCAAAGATTACATCGATAGGATTTATAGGAATCATGTCTTTGAAACCGAGCGCCAAACGGTCACTATTCTTCCTAATGGACATAAGTCCAATGTATAA

Coding sequence (CDS)

ATGGGAGGCAACTACAGGCAAAAGAATAAGACTCATTCATCCTTCTCCATCTTTAACTTCTTTAAATCAAAAAGAAGTAGGAAAGGAGATCCTTATGAGCATGCTACCAATTGGGAGGAGGTGTCGAGCACAAGTAAGGTGTGGCCGAGCGATGAGGACAAAGGCTTCCGTTGGGTTGCTGAGCCTGGTATCGATCAAAAGGCCAAAGATTACATCGATAGGATTTATAGGAATCATGTCTTTGAAACCGAGCGCCAAACGGTCACTATTCTTCCTAATGGACATAAGTCCAATGTATAA

Protein sequence

MGGNYRQKNKTHSSFSIFNFFKSKRSRKGDPYEHATNWEEVSSTSKVWPSDEDKGFRWVAEPGIDQKAKDYIDRIYRNHVFETERQTVTILPNGHKSNV

Homology

[Close]

BLAST of Cla97C08G146330.1 vs. NCBI nr
Match: KGN45873.1 (hypothetical protein Csa_005148 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 8.7e-39
Identity = 82/99 (82.83%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 1   MGGNYRQKNKTHSSFSIFNFFKSKRSRKGDPYEHATNWEEVSSTSKVWPSDEDKGFRWVA 60
           MGG++RQK KTHSSFSIF+FFKSKR RKGD YEH TNWE+V S+SKVWPSDEDKG+RWVA
Sbjct: 1   MGGSHRQK-KTHSSFSIFSFFKSKRGRKGDVYEHGTNWEDVPSSSKVWPSDEDKGYRWVA 60

Query: 61  EPGIDQKAKDYIDRIYRNHVFETERQTVTILPNGHKSNV 100
           EPGID+KAKDYIDRIY+N VFETERQTVTI PNG  SNV
Sbjct: 61  EPGIDRKAKDYIDRIYKNRVFETERQTVTIHPNGPNSNV 98

[Close]

BLAST of Cla97C08G146330.1 vs. NCBI nr
Match: KGN45870.1 (hypothetical protein Csa_004960 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 2.3e-31
Identity = 74/100 (74.00%), Postives = 84/100 (84.00%), Query Frame = 0


Query: 1   MGGNYRQKNKTHSSFSIFNFFKSKRSRKGDPYEHATNW-EEVSSTSKVWPSDEDKGFRWV 60
           MGGN RQK K+HSSFSIF+FFKSKR RKGD Y+H   W +E+  ++KVWPSDEDK   W+
Sbjct: 1   MGGN-RQK-KSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWI 60

Query: 61  AEPGIDQKAKDYIDRIYRNHVFETERQTVTILPNGHKSNV 100
           AEPGID+KAKDYIDRIYRN VFE+ERQTVTI PNG KSNV
Sbjct: 61  AEPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of Cla97C08G146330.1 vs. NCBI nr
Match: KAG6592306.1 (hypothetical protein SDJN03_14652, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 141.0 bits (354), Expect = 5.6e-30
Identity = 70/98 (71.43%), Postives = 80/98 (81.63%), Query Frame = 0


Query: 1  MGGNYRQKNKTHSSFSIFNFFKSKRSRKGDPYEHATNWEEVSSTSKVWPSDEDKGFRWVA 60
          MGGN R K K HSSFSIFNFFKSK+SRK D  +H++ W+E+  + KVWPSDEDK  RWVA
Sbjct: 1  MGGNNRSK-KAHSSFSIFNFFKSKKSRKEDHCDHSSCWDEMPRSGKVWPSDEDKTHRWVA 60

Query: 61 EPGIDQKAKDYIDRIYRNHVFETERQTVTILPNGHKSN 99
          EPGID+KAKDYIDRIYRN VFE+ERQTVT+  NG K N
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTLPANGIKLN 97

[Close]

BLAST of Cla97C08G146330.1 vs. NCBI nr
Match: KAA0035003.1 (hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343.1 hypothetical protein E5676_scaffold155G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 139.8 bits (351), Expect = 1.3e-29
Identity = 71/100 (71.00%), Postives = 82/100 (82.00%), Query Frame = 0


Query: 1   MGGNYRQKNKTHSSFSIFNFFKSKRSRKGDPYEHATN-WEEVSSTSKVWPSDEDKGFRWV 60
           MGGN RQK K+HSSFSIF+FFKS+R RKGD   H+ +  +E+  + KVWPSDEDK   WV
Sbjct: 1   MGGNNRQK-KSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWV 60

Query: 61  AEPGIDQKAKDYIDRIYRNHVFETERQTVTILPNGHKSNV 100
           AEPGID+KAKDYIDRIYRN VFE+ERQT+TI PNG KSNV
Sbjct: 61  AEPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99

[Close]

BLAST of Cla97C08G146330.1 vs. NCBI nr
Match: KAG6592308.1 (hypothetical protein SDJN03_14654, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.4 bits (350), Expect = 1.6e-29
Identity = 68/96 (70.83%), Postives = 79/96 (82.29%), Query Frame = 0


Query: 1  MGGNYRQKNKTHSSFSIFNFFKSKRSRKGDPYEHATNWEEVSSTSKVWPSDEDKGFRWVA 60
          MGGN R K K HSSFSIFNFFKS+RSRK D  +H+  W+E+  +SK+WPSDEDK  RWVA
Sbjct: 1  MGGNNRSK-KAHSSFSIFNFFKSRRSRKEDHCDHSGGWDEIPRSSKIWPSDEDKIHRWVA 60

Query: 61 EPGIDQKAKDYIDRIYRNHVFETERQTVTILPNGHK 97
          EPGID+KAKDYIDRIYRN VFE+ERQTVT+  +G K
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTLPASGTK 95

[Close]

BLAST of Cla97C08G146330.1 vs. ExPASy TrEMBL
Match: A0A0A0K8W0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.2e-39
Identity = 82/99 (82.83%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 1   MGGNYRQKNKTHSSFSIFNFFKSKRSRKGDPYEHATNWEEVSSTSKVWPSDEDKGFRWVA 60
           MGG++RQK KTHSSFSIF+FFKSKR RKGD YEH TNWE+V S+SKVWPSDEDKG+RWVA
Sbjct: 1   MGGSHRQK-KTHSSFSIFSFFKSKRGRKGDVYEHGTNWEDVPSSSKVWPSDEDKGYRWVA 60

Query: 61  EPGIDQKAKDYIDRIYRNHVFETERQTVTILPNGHKSNV 100
           EPGID+KAKDYIDRIY+N VFETERQTVTI PNG  SNV
Sbjct: 61  EPGIDRKAKDYIDRIYKNRVFETERQTVTIHPNGPNSNV 98

[Close]

BLAST of Cla97C08G146330.1 vs. ExPASy TrEMBL
Match: A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-31
Identity = 74/100 (74.00%), Postives = 84/100 (84.00%), Query Frame = 0


Query: 1   MGGNYRQKNKTHSSFSIFNFFKSKRSRKGDPYEHATNW-EEVSSTSKVWPSDEDKGFRWV 60
           MGGN RQK K+HSSFSIF+FFKSKR RKGD Y+H   W +E+  ++KVWPSDEDK   W+
Sbjct: 1   MGGN-RQK-KSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWI 60

Query: 61  AEPGIDQKAKDYIDRIYRNHVFETERQTVTILPNGHKSNV 100
           AEPGID+KAKDYIDRIYRN VFE+ERQTVTI PNG KSNV
Sbjct: 61  AEPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of Cla97C08G146330.1 vs. ExPASy TrEMBL
Match: A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.9e-31
Identity = 74/100 (74.00%), Postives = 84/100 (84.00%), Query Frame = 0


Query: 1   MGGNYRQKNKTHSSFSIFNFFKSKRSRKGDPYEHATNW-EEVSSTSKVWPSDEDKGFRWV 60
           MGGN RQK K+HSSFSIF+FFKS+R RKGD Y+H   W +E+  ++KVWPSDEDK   WV
Sbjct: 1   MGGN-RQK-KSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWV 60

Query: 61  AEPGIDQKAKDYIDRIYRNHVFETERQTVTILPNGHKSNV 100
           AEPGID+KAKDYIDRIYRN VFE+ERQTVTI PNG KSNV
Sbjct: 61  AEPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of Cla97C08G146330.1 vs. ExPASy TrEMBL
Match: A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 6.1e-30
Identity = 71/100 (71.00%), Postives = 82/100 (82.00%), Query Frame = 0


Query: 1   MGGNYRQKNKTHSSFSIFNFFKSKRSRKGDPYEHATN-WEEVSSTSKVWPSDEDKGFRWV 60
           MGGN RQK K+HSSFSIF+FFKS+R RKGD   H+ +  +E+  + KVWPSDEDK   WV
Sbjct: 1   MGGNNRQK-KSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWV 60

Query: 61  AEPGIDQKAKDYIDRIYRNHVFETERQTVTILPNGHKSNV 100
           AEPGID+KAKDYIDRIYRN VFE+ERQT+TI PNG KSNV
Sbjct: 61  AEPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99

[Close]

BLAST of Cla97C08G146330.1 vs. ExPASy TrEMBL
Match: A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.8e-29
Identity = 71/100 (71.00%), Postives = 81/100 (81.00%), Query Frame = 0


Query: 1   MGGNYRQKNKTHSSFSIFNFFKSKRSRKGDPYEHATN-WEEVSSTSKVWPSDEDKGFRWV 60
           MGGN RQK K H+SFSIF+FFKS+R RKGD   H+ +  +E+  + KVWPSDEDK   WV
Sbjct: 1   MGGNNRQK-KAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWV 60

Query: 61  AEPGIDQKAKDYIDRIYRNHVFETERQTVTILPNGHKSNV 100
           AEPGID+KAKDYIDRIYRN VFE+ERQTVTI PNG KSNV
Sbjct: 61  AEPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of Cla97C08G146330.1 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 6.7e-13
Identity = 42/91 (46.15%), Postives = 60/91 (65.93%), Query Frame = 0


Query: 1  MGGNYRQKNKTHSS--FSIFNFFKSKRSRKGDPYEHATNWEEVSSTSKVWPSDEDKGFRW 60
          MGG    KN++HSS  FS+F+FFK++RS +    E   +W++   T K   SDEDK + W
Sbjct: 1  MGG----KNRSHSSKRFSLFSFFKTRRSHR---VEADGSWDDFGYTRKAMASDEDKRY-W 60

Query: 61 VAEPGIDQKAKDYIDRIYRNHVFETERQTVT 90
          VAEPGID+KA  +I + +   V E+ERQT++
Sbjct: 61 VAEPGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of Cla97C08G146330.1 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-09
Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 33 EHATNWEEVSSTSKVWPSDEDKGFRWVAEPGIDQKAKDYIDRIYRNHVFETERQTVTILP 92
          E   +W++V  T K W SDEDK + WVAEPGID+KA  +I + + + V E+ERQT+    
Sbjct: 12 EADASWDDVIYTRKAWASDEDKRY-WVAEPGIDRKASAFIAKFHASRVSESERQTLPPCQ 71

Query: 93 NGH 96
          + H
Sbjct: 72 SHH 73

The following BLAST results are available for this feature:

BLAST of Cla97C08G146330.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45873.1	8.7e-39	82.83	hypothetical protein Csa_005148 [Cucumis sativus]	[more]
KGN45870.1	2.3e-31	74.00	hypothetical protein Csa_004960 [Cucumis sativus]	[more]
KAG6592306.1	5.6e-30	71.43	hypothetical protein SDJN03_14652, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0035003.1	1.3e-29	71.00	hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343...	[more]
KAG6592308.1	1.6e-29	70.83	hypothetical protein SDJN03_14654, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cla97C08G146330.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C08G146330.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8W0	4.2e-39	82.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1	[more]
A0A0A0K7Y2	1.1e-31	74.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0KBW1	1.9e-31	74.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1	[more]
A0A5A7SWT9	6.1e-30	71.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KAK6	1.8e-29	71.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1	[more]

BLAST of Cla97C08G146330.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05858.1	6.7e-13	46.15	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G26620.1	1.2e-09	46.03	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511:SF17	RIBOSOMAL PROTEIN S12	coord: 1..89
None	No IPR available	PANTHER	PTHR33511	OS06G0632400 PROTEIN	coord: 1..89

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C08G146330	Cla97C08G146330	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C08G146330.1-exon	Cla97C08G146330.1-exon-Cla97Chr08:4602984..4603283	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C08G146330.1-cds	Cla97C08G146330.1-cds-Cla97Chr08:4602984..4603283	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C08G146330.1	Cla97C08G146330.1-protein	polypeptide