Cla97C02G037540.1 (mRNA) Watermelon (97103) v2.5

Overview
NameCla97C02G037540.1
TypemRNA
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionUnknown protein
LocationCla97Chr02: 24627332 .. 24627757 (+)
Sequence length150
RNA-Seq ExpressionCla97C02G037540.1
SyntenyCla97C02G037540.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGAGCTTGGACGACGAACTGCTGCAAGTTTTAGGTACAACTCATTTGTCGGCTTGTATTTATCTTCTGCTTTATTTGAGTATTCTAATTTCTCACTTGGGGTTTTTTTTTCTTTTCTTATTTATTTATTTATTTTTTAAAGTAGTGGGGTATTGATTTCCTGTTTAATGGTTAGCTTTTTGGATGCGTTATTGGGTTGCTGCTTGTTTTTAAATACTCGTAGCTACATACAAGTTCTTTTTCTTTCTTTCTTTCTTTTTATGGGTGGAATTAGGTTTCTGAATCTTTTGTTGGTTGATTTTGGTGGTAGAGAGTGAAATGGTGGAGGGTTTAAAAAGTGGGGAGTCTCCTAATCAGTGGTTACCTGCTGAAGCCCTGCAAATTGAAGAAGATTCAAAAACTGTGGGGTTTTGGAGATTATAG

mRNA sequence

ATGCTGAGCTTGGACGACGAACTGCTGCAAGTTTTAGAGAGTGAAATGGTGGAGGGTTTAAAAAGTGGGGAGTCTCCTAATCAGTGGTTACCTGCTGAAGCCCTGCAAATTGAAGAAGATTCAAAAACTGTGGGGTTTTGGAGATTATAG

Coding sequence (CDS)

ATGCTGAGCTTGGACGACGAACTGCTGCAAGTTTTAGAGAGTGAAATGGTGGAGGGTTTAAAAAGTGGGGAGTCTCCTAATCAGTGGTTACCTGCTGAAGCCCTGCAAATTGAAGAAGATTCAAAAACTGTGGGGTTTTGGAGATTATAG

Protein sequence

MLSLDDELLQVLESEMVEGLKSGESPNQWLPAEALQIEEDSKTVGFWRL
Homology
[Close]
BLAST of Cla97C02G037540.1 vs. NCBI nr
Match: KGN61934.1 (hypothetical protein Csa_005978 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 1.8e-08
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 1  MLSLDDELLQVL-ESEMVEGLKSGESPNQWLPAEALQIEEDSKTVGF 47
          MLSLDDE LQVL ESEMVEG KSGES NQ LPAEA +IEEDSK+VGF
Sbjct: 1  MLSLDDEPLQVLVESEMVEGFKSGESLNQRLPAEAPEIEEDSKSVGF 47

[Close]
BLAST of Cla97C02G037540.1 vs. ExPASy TrEMBL
Match: A0A0A0LLN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G270760 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.5e-09
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 1  MLSLDDELLQVL-ESEMVEGLKSGESPNQWLPAEALQIEEDSKTVGF 47
          MLSLDDE LQVL ESEMVEG KSGES NQ LPAEA +IEEDSK+VGF
Sbjct: 1  MLSLDDEPLQVLVESEMVEGFKSGESLNQRLPAEAPEIEEDSKSVGF 47

The following BLAST results are available for this feature:
BLAST of Cla97C02G037540.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61934.11.8e-0882.98hypothetical protein Csa_005978 [Cucumis sativus][more]
BLAST of Cla97C02G037540.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cla97C02G037540.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLN38.5e-0982.98Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G270760 PE=4 SV=1[more]
BLAST of Cla97C02G037540.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla97C02G037540Cla97C02G037540gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C02G037540.1-exonCla97C02G037540.1-exon-Cla97Chr02:24627332..24627368exon
Cla97C02G037540.1-exonCla97C02G037540.1-exon-Cla97Chr02:24627645..24627757exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C02G037540.1-cdsCla97C02G037540.1-cds-Cla97Chr02:24627332..24627368CDS
Cla97C02G037540.1-cdsCla97C02G037540.1-cds-Cla97Chr02:24627645..24627757CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla97C02G037540.1Cla97C02G037540.1-proteinpolypeptide