ClCG10G010370.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview
NameClCG10G010370.1
TypemRNA
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr10: 23095371 .. 23095661 (+)
Sequence length291
RNA-Seq ExpressionClCG10G010370.1
SyntenyClCG10G010370.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGCATGAAGAAGAACATTGGTTTGGCAGCGATGATGATGGTGATGATGCTTATGATTGCTACTGTGGCGGACTCAGCCTCTCCCACCGAGAAGACCGTGATCGAACTCATTACCAACCGGCGTGGCGCCAATTCTTTATTCCCAAGAAAAATGATGAAAAATGGCAGAGGAAATGGAGTTTGTCTCATACTAGGTTGGCCATGCAATCCAAGCTACGGCTGCGGCCCTTTCTCCGACAGCTGTGCTTGCTACACTGCCGGATTCTGTGGAGATTATGTAGTCTAA

mRNA sequence

ATGGAGAGCATGAAGAAGAACATTGGTTTGGCAGCGATGATGATGGTGATGATGCTTATGATTGCTACTGTGGCGGACTCAGCCTCTCCCACCGAGAAGACCGTGATCGAACTCATTACCAACCGGCGTGGCGCCAATTCTTTATTCCCAAGAAAAATGATGAAAAATGGCAGAGGAAATGGAGTTTGTCTCATACTAGGTTGGCCATGCAATCCAAGCTACGGCTGCGGCCCTTTCTCCGACAGCTGTGCTTGCTACACTGCCGGATTCTGTGGAGATTATGTAGTCTAA

Coding sequence (CDS)

ATGGAGAGCATGAAGAAGAACATTGGTTTGGCAGCGATGATGATGGTGATGATGCTTATGATTGCTACTGTGGCGGACTCAGCCTCTCCCACCGAGAAGACCGTGATCGAACTCATTACCAACCGGCGTGGCGCCAATTCTTTATTCCCAAGAAAAATGATGAAAAATGGCAGAGGAAATGGAGTTTGTCTCATACTAGGTTGGCCATGCAATCCAAGCTACGGCTGCGGCCCTTTCTCCGACAGCTGTGCTTGCTACACTGCCGGATTCTGTGGAGATTATGTAGTCTAA

Protein sequence

MESMKKNIGLAAMMMVMMLMIATVADSASPTEKTVIELITNRRGANSLFPRKMMKNGRGNGVCLILGWPCNPSYGCGPFSDSCACYTAGFCGDYVV
Homology
BLAST of ClCG10G010370.1 vs. NCBI nr
Match: KAA0044337.1 (hypothetical protein E6C27_scaffold46G00620 [Cucumis melo var. makuwa] >TYK29466.1 hypothetical protein E5676_scaffold655G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 142.5 bits (358), Expect = 1.9e-30
Identity = 70/95 (73.68%), Postives = 82/95 (86.32%), Query Frame = 0

Query: 1  MESMKKNIGLAAMMMVMMLMIATVADSASPTEKTVIELITNRRGANSLFPRKMMKNGRGN 60
          M+SM +NIG AA MMVMML+IATV +SASPTEK +I+L+T+   A S FPRKMM+NG+GN
Sbjct: 1  MKSMNRNIGAAATMMVMMLLIATVVESASPTEK-MIKLVTDHHAAGS-FPRKMMRNGKGN 60

Query: 61 GVCLILGWPCNPSYGCGPFSDSCACYTAGFCGDYV 96
          GVC I GWPCNP+YGCGPFSDSCACYTAG CGD+V
Sbjct: 61 GVCPITGWPCNPAYGCGPFSDSCACYTAGHCGDFV 93

BLAST of ClCG10G010370.1 vs. NCBI nr
Match: KGN52762.1 (hypothetical protein Csa_014579 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 6.7e-28
Identity = 72/98 (73.47%), Postives = 83/98 (84.69%), Query Frame = 0

Query: 1  MESMKKNIGLA-AMMMVMMLMIATVADSASPTEK-TVIELITNRRGANSLFPRKMMKNGR 60
          M+ M KNIGLA A MMVMML+IATV +SASPTEK T+IEL+TN   A+S FPRKMM+NG+
Sbjct: 1  MKRMDKNIGLAVATMMVMMLLIATVVESASPTEKITMIELVTNHHAASS-FPRKMMRNGK 60

Query: 61 GNGVCLILGWPCNPSY-GCGPFSDSCACYTAGFCGDYV 96
          GNGVC I+G PCNP Y GCGPFSD+CACYTAG CGD+V
Sbjct: 61 GNGVCPIIGRPCNPEYGGCGPFSDTCACYTAGHCGDFV 97

BLAST of ClCG10G010370.1 vs. NCBI nr
Match: KAA0044336.1 (hypothetical protein E6C27_scaffold46G00610 [Cucumis melo var. makuwa] >TYK29465.1 hypothetical protein E5676_scaffold655G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 3.7e-26
Identity = 63/93 (67.74%), Postives = 76/93 (81.72%), Query Frame = 0

Query: 4  MKKNIGLAAMMMVMMLMIATVADS-ASPTEKTVIELITNRRGANSLFPRKMMKNGRGNGV 63
          M KN+G  A MMVMML+IATV +S ASPTEK +IEL+T+   A+S FPRKMM+NG+GNGV
Sbjct: 1  MNKNMGAEATMMVMMLLIATVVESAASPTEKAMIELVTDHHAASS-FPRKMMRNGKGNGV 60

Query: 64 CLILGWPCNPSYGCGPFSDSCACYTAGFCGDYV 96
          C I GWPC P++GCGP S  CACYT+G+CGDYV
Sbjct: 61 CPIRGWPCIPAFGCGPLSGVCACYTSGYCGDYV 92

BLAST of ClCG10G010370.1 vs. NCBI nr
Match: KAA0044338.1 (hypothetical protein E6C27_scaffold46G00630 [Cucumis melo var. makuwa] >TYK29467.1 hypothetical protein E5676_scaffold655G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 3.1e-09
Identity = 46/100 (46.00%), Postives = 59/100 (59.00%), Query Frame = 0

Query: 1  MESMKKNIGLAAMMMVMML---MIATVADSASPTEKTVIELITNRRGANSLFPRK-MMKN 60
          MES K + GL+   +V+M+   MIAT+ADS   TE      + N  G +  FPRK +MKN
Sbjct: 1  MESKKNSTGLSVATVVVMMVVFMIATLADSTITTENVASGAVVN--GGSHAFPRKNIMKN 60

Query: 61 GRGNGVCLILGWPCNPSYGCGPFSDSCACYTAGFCGDYVV 97
          G  NGVCL+ G  C     C     +CACYTAG CGD+V+
Sbjct: 61 GDQNGVCLVKGKACKSHKDC---PSNCACYTAGHCGDWVL 95

BLAST of ClCG10G010370.1 vs. NCBI nr
Match: KGN52763.1 (hypothetical protein Csa_014543 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 3.8e-07
Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 0

Query: 1  MESMKKNIGLAAMMMVMML--MIATVADSAS-PTEKTVIELITNRRGANSLFPRK-MMKN 60
          MES KK+I   A ++V+M+  MIAT+ADSA+  TE     ++ +  G +  FPRK ++KN
Sbjct: 1  MESKKKSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVD--GGSHAFPRKNVVKN 60

Query: 61 GRGNGVCLILGWPCNPSYGCGPFSDSCACYTAGFCGDYVV 97
          G  NGVCL+ G  C     C      CACYTAG CGD+V+
Sbjct: 61 GE-NGVCLVKGKACKSHKDC---PSDCACYTAGHCGDWVL 94

BLAST of ClCG10G010370.1 vs. ExPASy TrEMBL
Match: A0A5D3E0N0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00620 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 9.1e-31
Identity = 70/95 (73.68%), Postives = 82/95 (86.32%), Query Frame = 0

Query: 1  MESMKKNIGLAAMMMVMMLMIATVADSASPTEKTVIELITNRRGANSLFPRKMMKNGRGN 60
          M+SM +NIG AA MMVMML+IATV +SASPTEK +I+L+T+   A S FPRKMM+NG+GN
Sbjct: 1  MKSMNRNIGAAATMMVMMLLIATVVESASPTEK-MIKLVTDHHAAGS-FPRKMMRNGKGN 60

Query: 61 GVCLILGWPCNPSYGCGPFSDSCACYTAGFCGDYV 96
          GVC I GWPCNP+YGCGPFSDSCACYTAG CGD+V
Sbjct: 61 GVCPITGWPCNPAYGCGPFSDSCACYTAGHCGDFV 93

BLAST of ClCG10G010370.1 vs. ExPASy TrEMBL
Match: A0A0A0KWE4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000820 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.2e-28
Identity = 72/98 (73.47%), Postives = 83/98 (84.69%), Query Frame = 0

Query: 1  MESMKKNIGLA-AMMMVMMLMIATVADSASPTEK-TVIELITNRRGANSLFPRKMMKNGR 60
          M+ M KNIGLA A MMVMML+IATV +SASPTEK T+IEL+TN   A+S FPRKMM+NG+
Sbjct: 1  MKRMDKNIGLAVATMMVMMLLIATVVESASPTEKITMIELVTNHHAASS-FPRKMMRNGK 60

Query: 61 GNGVCLILGWPCNPSY-GCGPFSDSCACYTAGFCGDYV 96
          GNGVC I+G PCNP Y GCGPFSD+CACYTAG CGD+V
Sbjct: 61 GNGVCPIIGRPCNPEYGGCGPFSDTCACYTAGHCGDFV 97

BLAST of ClCG10G010370.1 vs. ExPASy TrEMBL
Match: A0A5D3E254 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00610 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.8e-26
Identity = 63/93 (67.74%), Postives = 76/93 (81.72%), Query Frame = 0

Query: 4  MKKNIGLAAMMMVMMLMIATVADS-ASPTEKTVIELITNRRGANSLFPRKMMKNGRGNGV 63
          M KN+G  A MMVMML+IATV +S ASPTEK +IEL+T+   A+S FPRKMM+NG+GNGV
Sbjct: 1  MNKNMGAEATMMVMMLLIATVVESAASPTEKAMIELVTDHHAASS-FPRKMMRNGKGNGV 60

Query: 64 CLILGWPCNPSYGCGPFSDSCACYTAGFCGDYV 96
          C I GWPC P++GCGP S  CACYT+G+CGDYV
Sbjct: 61 CPIRGWPCIPAFGCGPLSGVCACYTSGYCGDYV 92

BLAST of ClCG10G010370.1 vs. ExPASy TrEMBL
Match: A0A5D3E009 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00630 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-09
Identity = 46/100 (46.00%), Postives = 59/100 (59.00%), Query Frame = 0

Query: 1  MESMKKNIGLAAMMMVMML---MIATVADSASPTEKTVIELITNRRGANSLFPRK-MMKN 60
          MES K + GL+   +V+M+   MIAT+ADS   TE      + N  G +  FPRK +MKN
Sbjct: 1  MESKKNSTGLSVATVVVMMVVFMIATLADSTITTENVASGAVVN--GGSHAFPRKNIMKN 60

Query: 61 GRGNGVCLILGWPCNPSYGCGPFSDSCACYTAGFCGDYVV 97
          G  NGVCL+ G  C     C     +CACYTAG CGD+V+
Sbjct: 61 GDQNGVCLVKGKACKSHKDC---PSNCACYTAGHCGDWVL 95

BLAST of ClCG10G010370.1 vs. ExPASy TrEMBL
Match: A0A0A0KT53 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000830 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-07
Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 0

Query: 1  MESMKKNIGLAAMMMVMML--MIATVADSAS-PTEKTVIELITNRRGANSLFPRK-MMKN 60
          MES KK+I   A ++V+M+  MIAT+ADSA+  TE     ++ +  G +  FPRK ++KN
Sbjct: 1  MESKKKSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVD--GGSHAFPRKNVVKN 60

Query: 61 GRGNGVCLILGWPCNPSYGCGPFSDSCACYTAGFCGDYVV 97
          G  NGVCL+ G  C     C      CACYTAG CGD+V+
Sbjct: 61 GE-NGVCLVKGKACKSHKDC---PSDCACYTAGHCGDWVL 94

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0044337.11.9e-3073.68hypothetical protein E6C27_scaffold46G00620 [Cucumis melo var. makuwa] >TYK29466... [more]
KGN52762.16.7e-2873.47hypothetical protein Csa_014579 [Cucumis sativus][more]
KAA0044336.13.7e-2667.74hypothetical protein E6C27_scaffold46G00610 [Cucumis melo var. makuwa] >TYK29465... [more]
KAA0044338.13.1e-0946.00hypothetical protein E6C27_scaffold46G00630 [Cucumis melo var. makuwa] >TYK29467... [more]
KGN52763.13.8e-0746.00hypothetical protein Csa_014543 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3E0N09.1e-3173.68Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KWE43.2e-2873.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000820 PE=4 SV=1[more]
A0A5D3E2541.8e-2667.74Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E0091.5e-0946.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KT531.8e-0746.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000830 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG10G010370ClCG10G010370gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG10G010370.1-exonClCG10G010370.1-exon-CG_Chr10:23095371..23095661exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG10G010370.1-cdsClCG10G010370.1-cds-CG_Chr10:23095371..23095661CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG10G010370.1ClCG10G010370.1-proteinpolypeptide