ClCG08G013950.1 (mRNA) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAACTCTTCTTCTTCTTCTTCTTCTTCTCCTCCTCTCTCCAACCAACTTCACCTCCTTGGGAAAGTCGAGGTTTTTAAACTCCATGGTCGGGATAAAGCTTCCCGGAATGTCCTCCTTATTGTCGGAAAATACTTTCCAGGTAACGAAATTGAATTACCTTTTTTGTTCTTCAAAAACAGAGTGTGTGTGTGACTGTGTGTTGATTCATCTCTGTTTTACCTGTTTTGGTTTCAGCTCGGTTTGTGAGCAGTCAGGCCGTGAATGTCTATTTGAAGGATAAGATTTTCCCCTTCCTCAAAGATGGGCCTTTCACGGTGGTGTACATTCACACTGATGTTCATTGGACAGAGAATTTCCCTGGAGTTTCCAATCTCAAGGCAATCTATGAGGCCATTCCAATCACCATTAAGAACAACATTGAAGCTGTTTATTTTCTCCACCCCGGCTTGCAAGCCCGTGTGTTTTTCGCCACCGTCGGCCGCCTCATGCTCGACACCGAGTAAGCATTCTTCCTCCCCTGTTATTGGAATTTCCCATTGCATAAATAGGCAAAAAGATCAAATCTTTATGGTGGGGTTCTTGTATTTTGTTTGCCTTGCAGGTTGTATAACAAGGTGAAATATGTGAAAAGAGTGGAGTTTCTATGGGAATATGTTAGAAGGAAAGAAATGGAGTTACCGCAGTTTGTGTATGATCATGATGAGAAATTGGAGTTTTGTCCTGTGATGGACTCTGAATTAGAGAATGATTATCTCAGGCTCTTCTCCCCCTCGCCATCTGTGGATTCTGCAGTTTCTACGTACTCCATGAGGTGTTTTGCATGATGATGAAGACTCAAAGATGAGGTTGGGATACAGAGGTCTTTTTGGGTTTTGTTGTAGGAGTTTTTTTTGGTAGTAATGGCAGAAAATATTGCATGTGTTGTAGATTTTCTGTAGGCAAAGTTAAAAGGTTTATGAGCTTTCCTTGTGAAGAAAGTAAACAGTTAATACTTTACAGGAGAAGCAGTGGATAGGTTTAAATGAAGTTACTCTGTAATAAAATATATGTTCATGTCAGATTTCTAATTGACAAGGG ATGAACTCTTCTTCTTCTTCTTCTTCTTCTCCTCCTCTCTCCAACCAACTTCACCTCCTTGGGAAAGTCGAGGTTTTTAAACTCCATGGTCGGGATAAAGCTTCCCGGAATGTCCTCCTTATTGTCGGAAAATACTTTCCAGCTCGGTTTGTGAGCAGTCAGGCCGTGAATGTCTATTTGAAGGATAAGATTTTCCCCTTCCTCAAAGATGGGCCTTTCACGGTGGTGTACATTCACACTGATGTTCATTGGACAGAGAATTTCCCTGGAGTTTCCAATCTCAAGGCAATCTATGAGGCCATTCCAATCACCATTAAGAACAACATTGAAGCTGTTTATTTTCTCCACCCCGGCTTGCAAGCCCGTGTGTTTTTCGCCACCGTCGGCCGCCTCATGCTCGACACCGAGTTGTATAACAAGGTGAAATATGTGAAAAGAGTGGAGTTTCTATGGGAATATGTTAGAAGGAAAGAAATGGAGTTACCGCAGTTTGTGTATGATCATGATGAGAAATTGGAGTTTTGTCCTGTGATGGACTCTGAATTAGAGAATGATTATCTCAGGCTCTTCTCCCCCTCGCCATCTGTGGATTCTGCAGTTTCTACGTACTCCATGAGGTGTTTTGCATGATGATGAAGACTCAAAGATGAGGTTGGGATACAGAGGTCTTTTTGGGTTTTGTTGTAGGAGTTTTTTTTGGTAGTAATGGCAGAAAATATTGCATGTGTTGTAGATTTTCTGTAGGCAAAGTTAAAAGGTTTATGAGCTTTCCTTGTGAAGAAAGTAAACAGTTAATACTTTACAGGAGAAGCAGTGGATAGGTTTAAATGAAGTTACTCTGTAATAAAATATATGTTCATGTCAGATTTCTAATTGACAAGGG ATGAACTCTTCTTCTTCTTCTTCTTCTTCTCCTCCTCTCTCCAACCAACTTCACCTCCTTGGGAAAGTCGAGGTTTTTAAACTCCATGGTCGGGATAAAGCTTCCCGGAATGTCCTCCTTATTGTCGGAAAATACTTTCCAGCTCGGTTTGTGAGCAGTCAGGCCGTGAATGTCTATTTGAAGGATAAGATTTTCCCCTTCCTCAAAGATGGGCCTTTCACGGTGGTGTACATTCACACTGATGTTCATTGGACAGAGAATTTCCCTGGAGTTTCCAATCTCAAGGCAATCTATGAGGCCATTCCAATCACCATTAAGAACAACATTGAAGCTGTTTATTTTCTCCACCCCGGCTTGCAAGCCCGTGTGTTTTTCGCCACCGTCGGCCGCCTCATGCTCGACACCGAGTTGTATAACAAGGTGAAATATGTGAAAAGAGTGGAGTTTCTATGGGAATATGTTAGAAGGAAAGAAATGGAGTTACCGCAGTTTGTGTATGATCATGATGAGAAATTGGAGTTTTGTCCTGTGATGGACTCTGAATTAGAGAATGATTATCTCAGGCTCTTCTCCCCCTCGCCATCTGTGGATTCTGCAGTTTCTACGTACTCCATGAGGTGTTTTGCATGA MNSSSSSSSSPPLSNQLHLLGKVEVFKLHGRDKASRNVLLIVGKYFPARFVSSQAVNVYLKDKIFPFLKDGPFTVVYIHTDVHWTENFPGVSNLKAIYEAIPITIKNNIEAVYFLHPGLQARVFFATVGRLMLDTELYNKVKYVKRVEFLWEYVRRKEMELPQFVYDHDEKLEFCPVMDSELENDYLRLFSPSPSVDSAVSTYSMRCFA Homology
BLAST of ClCG08G013950.1 vs. NCBI nr
Match: XP_038884815.1 (ganglioside-induced differentiation-associated protein 2-like [Benincasa hispida]) HSP 1 Score: 392.1 bits (1006), Expect = 3.0e-105 Identity = 193/203 (95.07%), Postives = 198/203 (97.54%), Query Frame = 0
BLAST of ClCG08G013950.1 vs. NCBI nr
Match: XP_016899965.1 (PREDICTED: ganglioside-induced differentiation-associated protein 2-like [Cucumis melo]) HSP 1 Score: 379.0 bits (972), Expect = 2.6e-101 Identity = 188/209 (89.95%), Postives = 197/209 (94.26%), Query Frame = 0
BLAST of ClCG08G013950.1 vs. NCBI nr
Match: XP_031737047.1 (ganglioside-induced differentiation-associated-protein 2-like [Cucumis sativus] >KGN62279.1 hypothetical protein Csa_018770 [Cucumis sativus]) HSP 1 Score: 378.3 bits (970), Expect = 4.4e-101 Identity = 184/205 (89.76%), Postives = 195/205 (95.12%), Query Frame = 0
BLAST of ClCG08G013950.1 vs. NCBI nr
Match: KAA0064859.1 (ganglioside-induced differentiation-associated protein 2-like [Cucumis melo var. makuwa]) HSP 1 Score: 377.1 bits (967), Expect = 9.9e-101 Identity = 187/209 (89.47%), Postives = 196/209 (93.78%), Query Frame = 0
BLAST of ClCG08G013950.1 vs. NCBI nr
Match: KAG6598524.1 (Protein GDAP2-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 363.2 bits (931), Expect = 1.5e-96 Identity = 179/208 (86.06%), Postives = 195/208 (93.75%), Query Frame = 0
BLAST of ClCG08G013950.1 vs. ExPASy Swiss-Prot
Match: Q7JUR6 (Protein GDAP2 homolog OS=Drosophila melanogaster OX=7227 GN=Gdap2 PE=2 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 2.6e-11 Identity = 39/143 (27.27%), Postives = 76/143 (53.15%), Query Frame = 0
BLAST of ClCG08G013950.1 vs. ExPASy Swiss-Prot
Match: Q292F9 (Protein GDAP2 homolog OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=GA15091 PE=3 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 2.6e-11 Identity = 39/143 (27.27%), Postives = 76/143 (53.15%), Query Frame = 0
BLAST of ClCG08G013950.1 vs. ExPASy Swiss-Prot
Match: A7T167 (Protein GDAP2 homolog OS=Nematostella vectensis OX=45351 GN=gdap2 PE=3 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 9.2e-09 Identity = 41/147 (27.89%), Postives = 79/147 (53.74%), Query Frame = 0
BLAST of ClCG08G013950.1 vs. ExPASy TrEMBL
Match: A0A1S4DW79 (ganglioside-induced differentiation-associated protein 2-like OS=Cucumis melo OX=3656 GN=LOC107990288 PE=4 SV=1) HSP 1 Score: 379.0 bits (972), Expect = 1.3e-101 Identity = 188/209 (89.95%), Postives = 197/209 (94.26%), Query Frame = 0
BLAST of ClCG08G013950.1 vs. ExPASy TrEMBL
Match: A0A0A0LML6 (CRAL-TRIO domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G348170 PE=4 SV=1) HSP 1 Score: 378.3 bits (970), Expect = 2.1e-101 Identity = 184/205 (89.76%), Postives = 195/205 (95.12%), Query Frame = 0
BLAST of ClCG08G013950.1 vs. ExPASy TrEMBL
Match: A0A5A7VHB1 (Ganglioside-induced differentiation-associated protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001720 PE=4 SV=1) HSP 1 Score: 377.1 bits (967), Expect = 4.8e-101 Identity = 187/209 (89.47%), Postives = 196/209 (93.78%), Query Frame = 0
BLAST of ClCG08G013950.1 vs. ExPASy TrEMBL
Match: A0A6J1KC43 (protein GDAP2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111491951 PE=4 SV=1) HSP 1 Score: 356.3 bits (913), Expect = 8.7e-95 Identity = 177/210 (84.29%), Postives = 193/210 (91.90%), Query Frame = 0
BLAST of ClCG08G013950.1 vs. ExPASy TrEMBL
Match: A0A6J1CST5 (uncharacterized protein LOC111013979 OS=Momordica charantia OX=3673 GN=LOC111013979 PE=4 SV=1) HSP 1 Score: 342.0 bits (876), Expect = 1.7e-90 Identity = 168/207 (81.16%), Postives = 186/207 (89.86%), Query Frame = 0
BLAST of ClCG08G013950.1 vs. TAIR 10
Match: AT4G35750.1 (SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein ) HSP 1 Score: 233.4 bits (594), Expect = 1.6e-61 Identity = 104/194 (53.61%), Postives = 151/194 (77.84%), Query Frame = 0
BLAST of ClCG08G013950.1 vs. TAIR 10
Match: AT3G10210.1 (SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein ) HSP 1 Score: 156.0 bits (393), Expect = 3.3e-38 Identity = 73/170 (42.94%), Postives = 113/170 (66.47%), Query Frame = 0
BLAST of ClCG08G013950.1 vs. TAIR 10
Match: AT1G69340.1 (appr-1-p processing enzyme family protein ) HSP 1 Score: 66.2 bits (160), Expect = 3.5e-11 Identity = 38/156 (24.36%), Postives = 82/156 (52.56%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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