ClCG08G010010.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG08G010010.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	leucine-rich repeat extensin-like protein 3
Location	CG_Chr08: 22796499 .. 22797065 (+)
Sequence length	567
RNA-Seq Expression	ClCG08G010010.1
Synteny	ClCG08G010010.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACATTTCTCCAAAACCCTTCATTTCTCTTCCCTTTTCATTCTTCTCATCTTCCACCTCACCGGAGCTACGGCAGCTGCGGCCGAAGATGGCCGTGTGGTCGAGGTGGTTCCTCCGGTTAGCCTTCTTTGTATTAGCGAATGTTCAACTTGCCCCACCATATGTGCGCCGCCGCCGCCGCCGCCGCCCATGGTGGTGCCCAAGTCACCGCCACCGGTGCCCCATGTGCCACCACTGGCTTACTTCCCACTCAATTCACCCCCACCTCGACAAACCCCATCTCCACCGCCGCCGTCGCCGTCGCCACCACCGCCGGCGGCGGTGGCTTCATCTCATTCCCCGCCGCCTCCCGCATTCAAATATTATTTCAATTTGCCACCACCGCCGCCGGTGCTGATTCCAGTACCTGTGCCGCCGACCGGCACGGCGGCGCCTCATGGAAATACGAATACTAATGCTTATAATTACTACTTTTACGCTCCGACATCGTCTTCTCCGTCTCTTCCGGCGGCGTTTTTCTGGGGTCTGTTTCTCTTCCAGTTGATGTTGTTGTCTTCATGGTGA

mRNA sequence

ATGGAACATTTCTCCAAAACCCTTCATTTCTCTTCCCTTTTCATTCTTCTCATCTTCCACCTCACCGGAGCTACGGCAGCTGCGGCCGAAGATGGCCGTGTGGTCGAGGTGGTTCCTCCGGTTAGCCTTCTTTGTATTAGCGAATGTTCAACTTGCCCCACCATATGTGCGCCGCCGCCGCCGCCGCCGCCCATGGTGGTGCCCAAGTCACCGCCACCGGTGCCCCATGTGCCACCACTGGCTTACTTCCCACTCAATTCACCCCCACCTCGACAAACCCCATCTCCACCGCCGCCGTCGCCGTCGCCACCACCGCCGGCGGCGGTGGCTTCATCTCATTCCCCGCCGCCTCCCGCATTCAAATATTATTTCAATTTGCCACCACCGCCGCCGGTGCTGATTCCAGTACCTGTGCCGCCGACCGGCACGGCGGCGCCTCATGGAAATACGAATACTAATGCTTATAATTACTACTTTTACGCTCCGACATCGTCTTCTCCGTCTCTTCCGGCGGCGTTTTTCTGGGGTCTGTTTCTCTTCCAGTTGATGTTGTTGTCTTCATGGTGA

Coding sequence (CDS)

ATGGAACATTTCTCCAAAACCCTTCATTTCTCTTCCCTTTTCATTCTTCTCATCTTCCACCTCACCGGAGCTACGGCAGCTGCGGCCGAAGATGGCCGTGTGGTCGAGGTGGTTCCTCCGGTTAGCCTTCTTTGTATTAGCGAATGTTCAACTTGCCCCACCATATGTGCGCCGCCGCCGCCGCCGCCGCCCATGGTGGTGCCCAAGTCACCGCCACCGGTGCCCCATGTGCCACCACTGGCTTACTTCCCACTCAATTCACCCCCACCTCGACAAACCCCATCTCCACCGCCGCCGTCGCCGTCGCCACCACCGCCGGCGGCGGTGGCTTCATCTCATTCCCCGCCGCCTCCCGCATTCAAATATTATTTCAATTTGCCACCACCGCCGCCGGTGCTGATTCCAGTACCTGTGCCGCCGACCGGCACGGCGGCGCCTCATGGAAATACGAATACTAATGCTTATAATTACTACTTTTACGCTCCGACATCGTCTTCTCCGTCTCTTCCGGCGGCGTTTTTCTGGGGTCTGTTTCTCTTCCAGTTGATGTTGTTGTCTTCATGGTGA

Protein sequence

MEHFSKTLHFSSLFILLIFHLTGATAAAAEDGRVVEVVPPVSLLCISECSTCPTICAPPPPPPPMVVPKSPPPVPHVPPLAYFPLNSPPPRQTPSPPPPSPSPPPPAAVASSHSPPPPAFKYYFNLPPPPPVLIPVPVPPTGTAAPHGNTNTNAYNYYFYAPTSSSPSLPAAFFWGLFLFQLMLLSSW

Homology

[Close]

BLAST of ClCG08G010010.1 vs. NCBI nr
Match: XP_011657382.1 (extensin [Cucumis sativus] >KGN47605.1 hypothetical protein Csa_018938 [Cucumis sativus])

HSP 1 Score: 276.9 bits (707), Expect = 1.3e-70
Identity = 157/191 (82.20%), Postives = 162/191 (84.82%), Query Frame = 0


Query: 1   MEHFSKTLHFSSLFILLIFHLTGATAAAAEDGRVVEVVPPVSLLCISECSTCPTICAPPP 60
           MEHFSKTLHFSS+ ILLI  L     A  EDGRVVEVVPPVSLLCISECSTCPTICAPPP
Sbjct: 1   MEHFSKTLHFSSILILLILRL---ARAVPEDGRVVEVVPPVSLLCISECSTCPTICAPPP 60

Query: 61  PPPPMVVPKSPPPVPHVPPLAYFPLNSPPPRQTPSPPPPSPSPPPPAAVA---SSHSPPP 120
           PPPP +V KSPPPVPHVPPLAYFPLNSPPPR T SPPPP PSPPPP A A   SSHSPPP
Sbjct: 61  PPPPPIVLKSPPPVPHVPPLAYFPLNSPPPRPTSSPPPPWPSPPPPPATATAVSSHSPPP 120

Query: 121 PAFKYYFNLPPPPPVLIPVPVPPTGTAAPHGNTNTNAYNYYFYAPTSSS--PSLPAAFFW 180
           PAF+YYFNLPPPPPVLIPVPVPP+ TA PHGNTN+NAYNYYFYAP SSS  PSLP A FW
Sbjct: 121 PAFRYYFNLPPPPPVLIPVPVPPSATAGPHGNTNSNAYNYYFYAPASSSAPPSLPTALFW 180

Query: 181 GLFLFQLMLLS 187
           GLFLF LML S
Sbjct: 181 GLFLFHLMLCS 188

[Close]

BLAST of ClCG08G010010.1 vs. NCBI nr
Match: KAA0064726.1 (classical arabinogalactan protein 9-like [Cucumis melo var. makuwa])

HSP 1 Score: 274.6 bits (701), Expect = 6.2e-70
Identity = 158/191 (82.72%), Postives = 164/191 (85.86%), Query Frame = 0


Query: 1   MEHFSKTLHFSSLFILLIFHLTGATAAAAEDGRVVEVVPPVSLLCISECSTCPTICAPPP 60
           MEHFSKTLHFSS+ ILLI  L G   AA EDGRVV+VVPPVSLLCISECSTCPTICAPPP
Sbjct: 1   MEHFSKTLHFSSILILLILPLAG---AAPEDGRVVQVVPPVSLLCISECSTCPTICAPPP 60

Query: 61  PPPPMVVPKSPPPVPHVPPLAYFPLNSPPPRQTPSPPPPSPSPPPPAAVA---SSHSPPP 120
           PPP   V KSPPPVPHVPPLAYFPLNSPPPR T SPPPPSPSPPPP A A   SSHSPPP
Sbjct: 61  PPP--TVLKSPPPVPHVPPLAYFPLNSPPPRPTSSPPPPSPSPPPPPATATAVSSHSPPP 120

Query: 121 PAFKYYFNLPPPPPVLIPVPVPPTGTAAPHGNTNTNAYNYYFYAPTSSS--PSLPAAFFW 180
           PAF+YYFNLPPPPPVLIPVPVPP+ TAAP GNTN+NAYNYYFYAP SSS  PSLP AFFW
Sbjct: 121 PAFRYYFNLPPPPPVLIPVPVPPSATAAPRGNTNSNAYNYYFYAPASSSAPPSLPTAFFW 180

Query: 181 GLFLFQLMLLS 187
           GLFLF L+L S
Sbjct: 181 GLFLFHLILCS 186

[Close]

BLAST of ClCG08G010010.1 vs. NCBI nr
Match: XP_008445508.1 (PREDICTED: classical arabinogalactan protein 9-like [Cucumis melo])

HSP 1 Score: 257.7 bits (657), Expect = 7.9e-65
Identity = 149/179 (83.24%), Postives = 154/179 (86.03%), Query Frame = 0


Query: 1   MEHFSKTLHFSSLFILLIFHLTGATAAAAEDGRVVEVVPPVSLLCISECSTCPTICAPPP 60
           MEHFSKTLHFSS+ ILLI  L G   AA EDGRVV+VVPPVSLLCISECSTCPTICAPPP
Sbjct: 1   MEHFSKTLHFSSILILLILPLAG---AAPEDGRVVQVVPPVSLLCISECSTCPTICAPPP 60

Query: 61  PPPPMVVPKSPPPVPHVPPLAYFPLNSPPPRQTPSPPPPSPSPPPPAAVA---SSHSPPP 120
           PPP   V KSPPPVPHVPPLAYFPLNSPPPR T SPPPPSPSPPPP A A   SSHSPPP
Sbjct: 61  PPP--TVLKSPPPVPHVPPLAYFPLNSPPPRPTSSPPPPSPSPPPPPATATAVSSHSPPP 120

Query: 121 PAFKYYFNLPPPPPVLIPVPVPPTGTAAPHGNTNTNAYNYYFYAPTSSS--PSLPAAFF 175
           PAF+YYFNLPPPPPVLIPVPVPP+ TAAP GNTN+NAYNYYFYAP SSS  PSLP AFF
Sbjct: 121 PAFRYYFNLPPPPPVLIPVPVPPSATAAPRGNTNSNAYNYYFYAPASSSAPPSLPTAFF 174

[Close]

BLAST of ClCG08G010010.1 vs. NCBI nr
Match: XP_022132157.1 (leucine-rich repeat extensin-like protein 3 [Momordica charantia])

HSP 1 Score: 214.9 bits (546), Expect = 5.8e-52
Identity = 135/192 (70.31%), Postives = 144/192 (75.00%), Query Frame = 0


Query: 1   MEHFSKTLHFSSLFILLIFHLTGATAAAAEDGRVVEVVPPVSLLCISECSTCPTICAPPP 60
           MEHF +  HFS L ILLI  L GA AAA+ED R+VEVVPPVSLLCISECSTCP IC+PPP
Sbjct: 1   MEHFRRIFHFSCLSILLIIDLAGA-AAASEDHRLVEVVPPVSLLCISECSTCPVICSPPP 60

Query: 61  PPPPMVVPKSPPPVPHVPPLAYFPLNSP----PPRQTPSPPPPSPSPPPPAAVASSHSPP 120
           PP   +  KSPP  PH PPLAY PLN+P    PPR TPSP PP P PP P   A SH PP
Sbjct: 61  PPTAAL--KSPP--PHSPPLAYVPLNAPPSPSPPRPTPSPSPPPPPPPSPPLAALSHPPP 120

Query: 121 PPAFKYYFNLPPPPPVLIPVPVPPTGTAAPHGNTNTNAYNYYFYAPTSSSPSLPAAFFWG 180
           PPAF YYFNLPPPPPVLIPVPVPP  TAAPHGNTN+NAYNYYFYA  SSS SLPA +   
Sbjct: 121 PPAFNYYFNLPPPPPVLIPVPVPPK-TAAPHGNTNSNAYNYYFYASKSSSLSLPATWLCA 180

Query: 181 LFLFQLMLLSSW 189
           LF+FQ M  S W
Sbjct: 181 LFVFQFM-FSCW 185

[Close]

BLAST of ClCG08G010010.1 vs. NCBI nr
Match: XP_022951103.1 (extensin-3-like [Cucurbita moschata])

HSP 1 Score: 196.1 bits (497), Expect = 2.8e-46
Identity = 129/185 (69.73%), Postives = 139/185 (75.14%), Query Frame = 0


Query: 1   MEHFSKTLHFSSLFILLIFHLTGATAAAAEDGRVVEVVPPVSLLCISECSTCPTICAPPP 60
           MEH + T  F   FILLI HL GA A A+++ R+VEVVPPVSLLCISECSTCP ICA  P
Sbjct: 1   MEHSTTTTLF---FILLIVHLAGA-AMASDNHRLVEVVPPVSLLCISECSTCPVICA--P 60

Query: 61  PPPPMVVPKSPPPVPHVPPLAYFPLNSPPPRQTPSPPPPSPSPPPP--AAVASSHSPPPP 120
           PPPP V  KSPPPVPH PP+A FPLN P     PSPP PSPSPPPP     ASSHSPPPP
Sbjct: 61  PPPPTVTLKSPPPVPHSPPMASFPLNPP-----PSPPRPSPSPPPPPVPVAASSHSPPPP 120

Query: 121 AFKYYFNLPPPPPVLIPVPVPPTGTAAPHGNTNTNAYNYYFYAPTSSSPSLPAAFFWGLF 180
           AFKYYF+LPPPPPVLIP P+PPT TAAPHG  NTNAYNYYFYA  S S + P  F W LF
Sbjct: 121 AFKYYFSLPPPPPVLIPEPLPPT-TAAPHG--NTNAYNYYFYASNSCSLNSP-VFLWALF 170

Query: 181 LFQLM 184
           LF L+
Sbjct: 181 LFHLV 170

[Close]

BLAST of ClCG08G010010.1 vs. ExPASy Swiss-Prot
Match: Q9T0K5 (Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=LRX3 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.8e-04
Identity = 50/122 (40.98%), Postives = 58/122 (47.54%), Query Frame = 0


Query: 58  PPPPPPPMVVPKSPPPVPHVPPLAYFPLNSPPPRQTP----SPPPPSPSPPPPAAVASSH 117
           PPPPPPP V    PPP P  PP  Y P   PPP   P    SPPPPSP PPPP   +   
Sbjct: 440 PPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPP 499

Query: 118 SPPPPAFKYYFNLPPPPPVLIPVPVPPTGTAAPHGNTNTNAYNYYFYAPTSSSPSLPAAF 176
            PPPP     ++ PPPPPV    P PP+    P   T       +   P   SP  P  +
Sbjct: 500 PPPPPPPPPVYS-PPPPPVYSSPPPPPSPAPTPVYCTRPPPPPPHSPPPPQFSPPPPEPY 559

[Close]

BLAST of ClCG08G010010.1 vs. ExPASy TrEMBL
Match: A0A0A0KD44 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G363610 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 6.1e-71
Identity = 157/191 (82.20%), Postives = 162/191 (84.82%), Query Frame = 0


Query: 1   MEHFSKTLHFSSLFILLIFHLTGATAAAAEDGRVVEVVPPVSLLCISECSTCPTICAPPP 60
           MEHFSKTLHFSS+ ILLI  L     A  EDGRVVEVVPPVSLLCISECSTCPTICAPPP
Sbjct: 1   MEHFSKTLHFSSILILLILRL---ARAVPEDGRVVEVVPPVSLLCISECSTCPTICAPPP 60

Query: 61  PPPPMVVPKSPPPVPHVPPLAYFPLNSPPPRQTPSPPPPSPSPPPPAAVA---SSHSPPP 120
           PPPP +V KSPPPVPHVPPLAYFPLNSPPPR T SPPPP PSPPPP A A   SSHSPPP
Sbjct: 61  PPPPPIVLKSPPPVPHVPPLAYFPLNSPPPRPTSSPPPPWPSPPPPPATATAVSSHSPPP 120

Query: 121 PAFKYYFNLPPPPPVLIPVPVPPTGTAAPHGNTNTNAYNYYFYAPTSSS--PSLPAAFFW 180
           PAF+YYFNLPPPPPVLIPVPVPP+ TA PHGNTN+NAYNYYFYAP SSS  PSLP A FW
Sbjct: 121 PAFRYYFNLPPPPPVLIPVPVPPSATAGPHGNTNSNAYNYYFYAPASSSAPPSLPTALFW 180

Query: 181 GLFLFQLMLLS 187
           GLFLF LML S
Sbjct: 181 GLFLFHLMLCS 188

[Close]

BLAST of ClCG08G010010.1 vs. ExPASy TrEMBL
Match: A0A5A7VEH7 (Classical arabinogalactan protein 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00300 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 3.0e-70
Identity = 158/191 (82.72%), Postives = 164/191 (85.86%), Query Frame = 0


Query: 1   MEHFSKTLHFSSLFILLIFHLTGATAAAAEDGRVVEVVPPVSLLCISECSTCPTICAPPP 60
           MEHFSKTLHFSS+ ILLI  L G   AA EDGRVV+VVPPVSLLCISECSTCPTICAPPP
Sbjct: 1   MEHFSKTLHFSSILILLILPLAG---AAPEDGRVVQVVPPVSLLCISECSTCPTICAPPP 60

Query: 61  PPPPMVVPKSPPPVPHVPPLAYFPLNSPPPRQTPSPPPPSPSPPPPAAVA---SSHSPPP 120
           PPP   V KSPPPVPHVPPLAYFPLNSPPPR T SPPPPSPSPPPP A A   SSHSPPP
Sbjct: 61  PPP--TVLKSPPPVPHVPPLAYFPLNSPPPRPTSSPPPPSPSPPPPPATATAVSSHSPPP 120

Query: 121 PAFKYYFNLPPPPPVLIPVPVPPTGTAAPHGNTNTNAYNYYFYAPTSSS--PSLPAAFFW 180
           PAF+YYFNLPPPPPVLIPVPVPP+ TAAP GNTN+NAYNYYFYAP SSS  PSLP AFFW
Sbjct: 121 PAFRYYFNLPPPPPVLIPVPVPPSATAAPRGNTNSNAYNYYFYAPASSSAPPSLPTAFFW 180

Query: 181 GLFLFQLMLLS 187
           GLFLF L+L S
Sbjct: 181 GLFLFHLILCS 186

[Close]

BLAST of ClCG08G010010.1 vs. ExPASy TrEMBL
Match: A0A1S3BCX5 (classical arabinogalactan protein 9-like OS=Cucumis melo OX=3656 GN=LOC103488504 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 3.8e-65
Identity = 149/179 (83.24%), Postives = 154/179 (86.03%), Query Frame = 0


Query: 1   MEHFSKTLHFSSLFILLIFHLTGATAAAAEDGRVVEVVPPVSLLCISECSTCPTICAPPP 60
           MEHFSKTLHFSS+ ILLI  L G   AA EDGRVV+VVPPVSLLCISECSTCPTICAPPP
Sbjct: 1   MEHFSKTLHFSSILILLILPLAG---AAPEDGRVVQVVPPVSLLCISECSTCPTICAPPP 60

Query: 61  PPPPMVVPKSPPPVPHVPPLAYFPLNSPPPRQTPSPPPPSPSPPPPAAVA---SSHSPPP 120
           PPP   V KSPPPVPHVPPLAYFPLNSPPPR T SPPPPSPSPPPP A A   SSHSPPP
Sbjct: 61  PPP--TVLKSPPPVPHVPPLAYFPLNSPPPRPTSSPPPPSPSPPPPPATATAVSSHSPPP 120

Query: 121 PAFKYYFNLPPPPPVLIPVPVPPTGTAAPHGNTNTNAYNYYFYAPTSSS--PSLPAAFF 175
           PAF+YYFNLPPPPPVLIPVPVPP+ TAAP GNTN+NAYNYYFYAP SSS  PSLP AFF
Sbjct: 121 PAFRYYFNLPPPPPVLIPVPVPPSATAAPRGNTNSNAYNYYFYAPASSSAPPSLPTAFF 174

[Close]

BLAST of ClCG08G010010.1 vs. ExPASy TrEMBL
Match: A0A6J1BT26 (leucine-rich repeat extensin-like protein 3 OS=Momordica charantia OX=3673 GN=LOC111005088 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.8e-52
Identity = 135/192 (70.31%), Postives = 144/192 (75.00%), Query Frame = 0


Query: 1   MEHFSKTLHFSSLFILLIFHLTGATAAAAEDGRVVEVVPPVSLLCISECSTCPTICAPPP 60
           MEHF +  HFS L ILLI  L GA AAA+ED R+VEVVPPVSLLCISECSTCP IC+PPP
Sbjct: 1   MEHFRRIFHFSCLSILLIIDLAGA-AAASEDHRLVEVVPPVSLLCISECSTCPVICSPPP 60

Query: 61  PPPPMVVPKSPPPVPHVPPLAYFPLNSP----PPRQTPSPPPPSPSPPPPAAVASSHSPP 120
           PP   +  KSPP  PH PPLAY PLN+P    PPR TPSP PP P PP P   A SH PP
Sbjct: 61  PPTAAL--KSPP--PHSPPLAYVPLNAPPSPSPPRPTPSPSPPPPPPPSPPLAALSHPPP 120

Query: 121 PPAFKYYFNLPPPPPVLIPVPVPPTGTAAPHGNTNTNAYNYYFYAPTSSSPSLPAAFFWG 180
           PPAF YYFNLPPPPPVLIPVPVPP  TAAPHGNTN+NAYNYYFYA  SSS SLPA +   
Sbjct: 121 PPAFNYYFNLPPPPPVLIPVPVPPK-TAAPHGNTNSNAYNYYFYASKSSSLSLPATWLCA 180

Query: 181 LFLFQLMLLSSW 189
           LF+FQ M  S W
Sbjct: 181 LFVFQFM-FSCW 185

[Close]

BLAST of ClCG08G010010.1 vs. ExPASy TrEMBL
Match: A0A6J1GGS2 (extensin-3-like OS=Cucurbita moschata OX=3662 GN=LOC111454053 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 1.4e-46
Identity = 129/185 (69.73%), Postives = 139/185 (75.14%), Query Frame = 0


Query: 1   MEHFSKTLHFSSLFILLIFHLTGATAAAAEDGRVVEVVPPVSLLCISECSTCPTICAPPP 60
           MEH + T  F   FILLI HL GA A A+++ R+VEVVPPVSLLCISECSTCP ICA  P
Sbjct: 1   MEHSTTTTLF---FILLIVHLAGA-AMASDNHRLVEVVPPVSLLCISECSTCPVICA--P 60

Query: 61  PPPPMVVPKSPPPVPHVPPLAYFPLNSPPPRQTPSPPPPSPSPPPP--AAVASSHSPPPP 120
           PPPP V  KSPPPVPH PP+A FPLN P     PSPP PSPSPPPP     ASSHSPPPP
Sbjct: 61  PPPPTVTLKSPPPVPHSPPMASFPLNPP-----PSPPRPSPSPPPPPVPVAASSHSPPPP 120

Query: 121 AFKYYFNLPPPPPVLIPVPVPPTGTAAPHGNTNTNAYNYYFYAPTSSSPSLPAAFFWGLF 180
           AFKYYF+LPPPPPVLIP P+PPT TAAPHG  NTNAYNYYFYA  S S + P  F W LF
Sbjct: 121 AFKYYFSLPPPPPVLIPEPLPPT-TAAPHG--NTNAYNYYFYASNSCSLNSP-VFLWALF 170

Query: 181 LFQLM 184
           LF L+
Sbjct: 181 LFHLV 170

[Close]

BLAST of ClCG08G010010.1 vs. TAIR 10
Match: AT5G11990.1 (proline-rich family protein )

HSP 1 Score: 51.6 bits (122), Expect = 8.0e-07
Identity = 74/183 (40.44%), Postives = 91/183 (49.73%), Query Frame = 0


Query: 15  ILLIFHLTGATAAAAEDGRVVEVVPPVSLLCISECSTCPTICAPPP--PPPPMVVPKSPP 74
           I++I  L      A+       V+ P   LCISECSTCPTIC+PPP  P P M    SPP
Sbjct: 4   IVIIIALVMVMVVASSPSDQTNVLTP---LCISECSTCPTICSPPPSKPSPSM----SPP 63

Query: 75  PVPHVPPLAYFPLNSPPPRQTPSPPPPSPSPPPPAAVASSHSPPPPAFKYYFNLPPPPPV 134
           P P +P  +  P   PPP    SPPP S S  PP  +   H PPPP F YYF   PPPP 
Sbjct: 64  PSPSLPLSSSPP---PPPPHKHSPPPLSQSLSPPPLITVIH-PPPPRF-YYFESTPPPPP 123

Query: 135 LIP-----VPVPPTGTAAPHGNTNTN---AYNY-YFYAPTSSSPSLPAAFFWGLFLFQLM 187
           L P      P  P+   +P G +       Y + YFY  T+S+ +L    F   FL  L+
Sbjct: 124 LSPDGKGSPPSVPSSPPSPKGQSQGQQQPPYPFPYFYFYTASNATL---LFSSSFLIALV 171

[Close]

BLAST of ClCG08G010010.1 vs. TAIR 10
Match: AT4G13340.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 47.0 bits (110), Expect = 2.0e-05
Identity = 50/122 (40.98%), Postives = 58/122 (47.54%), Query Frame = 0


Query: 58  PPPPPPPMVVPKSPPPVPHVPPLAYFPLNSPPPRQTP----SPPPPSPSPPPPAAVASSH 117
           PPPPPPP V    PPP P  PP  Y P   PPP   P    SPPPPSP PPPP   +   
Sbjct: 440 PPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPP 499

Query: 118 SPPPPAFKYYFNLPPPPPVLIPVPVPPTGTAAPHGNTNTNAYNYYFYAPTSSSPSLPAAF 176
            PPPP     ++ PPPPPV    P PP+    P   T       +   P   SP  P  +
Sbjct: 500 PPPPPPPPPVYS-PPPPPVYSSPPPPPSPAPTPVYCTRPPPPPPHSPPPPQFSPPPPEPY 559

The following BLAST results are available for this feature:

BLAST of ClCG08G010010.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011657382.1	1.3e-70	82.20	extensin [Cucumis sativus] >KGN47605.1 hypothetical protein Csa_018938 [Cucumis ...	[more]
KAA0064726.1	6.2e-70	82.72	classical arabinogalactan protein 9-like [Cucumis melo var. makuwa]	[more]
XP_008445508.1	7.9e-65	83.24	PREDICTED: classical arabinogalactan protein 9-like [Cucumis melo]	[more]
XP_022132157.1	5.8e-52	70.31	leucine-rich repeat extensin-like protein 3 [Momordica charantia]	[more]
XP_022951103.1	2.8e-46	69.73	extensin-3-like [Cucurbita moschata]	[more]

BLAST of ClCG08G010010.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T0K5	2.8e-04	40.98	Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]

BLAST of ClCG08G010010.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KD44	6.1e-71	82.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G363610 PE=4 SV=1	[more]
A0A5A7VEH7	3.0e-70	82.72	Classical arabinogalactan protein 9-like OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BCX5	3.8e-65	83.24	classical arabinogalactan protein 9-like OS=Cucumis melo OX=3656 GN=LOC103488504...	[more]
A0A6J1BT26	2.8e-52	70.31	leucine-rich repeat extensin-like protein 3 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1GGS2	1.4e-46	69.73	extensin-3-like OS=Cucurbita moschata OX=3662 GN=LOC111454053 PE=4 SV=1	[more]

BLAST of ClCG08G010010.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11990.1	8.0e-07	40.44	proline-rich family protein	[more]
AT4G13340.1	2.0e-05	40.98	Leucine-rich repeat (LRR) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 94..106 score: 60.0 coord: 109..130 score: 29.09 coord: 51..63 score: 46.15 coord: 72..88 score: 38.82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..113

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG08G010010	ClCG08G010010	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG08G010010.1-exon	ClCG08G010010.1-exon-CG_Chr08:22796499..22797065	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG08G010010.1-cds	ClCG08G010010.1-cds-CG_Chr08:22796499..22797065	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG08G010010.1	ClCG08G010010.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane