ClCG08G004300.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview
NameClCG08G004300.1
TypemRNA
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr08: 13604578 .. 13604898 (-)
Sequence length288
RNA-Seq ExpressionClCG08G004300.1
SyntenyClCG08G004300.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGCTGCTTGGAACTCAAGTTCCAATTCAGGTAGTTTATGTTGGGTGCTTTGAAATAACTTAGGACAAGTTCGATTGGCTGGCCTCAAGTATATGTCCACCTTGTCAAGGGTGAAGCTCATTGAAGGGATGACAATATGCTATGGGCTTGAGAATCTTTATTCATTAAGCATCTCAAATATTCTAGTTGAGTCTGATTGTTTGGAGGCAATCAATCTACATGAGATTACTGTCGATATTTCTAATGTTTCTCTCTTCATCGGGGAGGTTACGGGATGTGGCAAAGCATTGGGAGTTGTCGCTTATTCTCATAGTTAG

mRNA sequence

ATGGATGCTGCTTGGAACTCAAGTTCCAATTCAGGACAAGTTCGATTGGCTGGCCTCAAGTATATGTCCACCTTGTCAAGGGTGAAGCTCATTGAAGGGATGACAATATGCTATGGGCTTGAGAATCTTTATTCATTAAGCATCTCAAATATTCTAGTTGAGTCTGATTGTTTGGAGGCAATCAATCTACATGAGATTACTGTCGATATTTCTAATGTTTCTCTCTTCATCGGGGAGGTTACGGGATGTGGCAAAGCATTGGGAGTTGTCGCTTATTCTCATAGTTAG

Coding sequence (CDS)

ATGGATGCTGCTTGGAACTCAAGTTCCAATTCAGGACAAGTTCGATTGGCTGGCCTCAAGTATATGTCCACCTTGTCAAGGGTGAAGCTCATTGAAGGGATGACAATATGCTATGGGCTTGAGAATCTTTATTCATTAAGCATCTCAAATATTCTAGTTGAGTCTGATTGTTTGGAGGCAATCAATCTACATGAGATTACTGTCGATATTTCTAATGTTTCTCTCTTCATCGGGGAGGTTACGGGATGTGGCAAAGCATTGGGAGTTGTCGCTTATTCTCATAGTTAG

Protein sequence

MDAAWNSSSNSGQVRLAGLKYMSTLSRVKLIEGMTICYGLENLYSLSISNILVESDCLEAINLHEITVDISNVSLFIGEVTGCGKALGVVAYSHS
Homology
[Close]
BLAST of ClCG08G004300.1 vs. NCBI nr
Match: XP_038886170.1 (uncharacterized protein LOC120076417 [Benincasa hispida])

HSP 1 Score: 73.9 bits (180), Expect = 8.1e-10
Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = 0 

Query: 1   MDAAWNSSSNS-----------GQVRLAGLKYMSTLSRVKLIEGMTICYGLENLYSLSIS 60
           MDA+WNS  ++            +V +AGLK++    +V ++E + IC+GLE L S+ IS
Sbjct: 81  MDASWNSKIDACGLGWVFLDHLYRVCMAGLKFVLRCQKVNILEAIAICFGLEILSSIDIS 140

Query: 61  NILVESDCLEAI--NLHEITVDISNVSLFIGEVTGCGKALGVVAYSH 95
           NI+VESDCLE +   L++  VD+S VS    E    G  LGV+++SH
Sbjct: 141 NIMVESDCLEEVINLLNDDVVDLSEVSFCSEEAKDRGGNLGVISFSH 187

The following BLAST results are available for this feature:
BLAST of ClCG08G004300.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038886170.18.1e-1041.12uncharacterized protein LOC120076417 [Benincasa hispida][more]
BLAST of ClCG08G004300.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG08G004300.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG08G004300.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG08G004300ClCG08G004300gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG08G004300.1-exonClCG08G004300.1-exon-CG_Chr08:13604578..13604831exon
ClCG08G004300.1-exonClCG08G004300.1-exon-CG_Chr08:13604865..13604898exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG08G004300.1-cdsClCG08G004300.1-cds-CG_Chr08:13604578..13604831CDS
ClCG08G004300.1-cdsClCG08G004300.1-cds-CG_Chr08:13604865..13604898CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG08G004300.1ClCG08G004300.1-proteinpolypeptide