ClCG08G002250.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview
NameClCG08G002250.1
TypemRNA
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr08: 4748307 .. 4749035 (-)
Sequence length534
RNA-Seq ExpressionClCG08G002250.1
SyntenyClCG08G002250.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGATGCAACTTCACTCCATCTCCAGAATGCTAGTGCAGCTTCGCCCCATCTCCAAAATGTTGGTGCATCTTCGCTACATCTTAAAAATGCTAGTGCAGCTTCGCTCCATCTCCAAAATGGTGGTGCAGCTTCGCGACATTTCCAAAACGTTGGTGCATATTCGCTTCATCTTCGAAATGTTGATGCAACTTCACTCCACCTCCAAAATATTGATGTAGCTTCACTCTATCTCCAAATATGTTAATGCAGCTTCGCTCCATCTCCAAAATGCTGGTGCAGCTTCGCGGCATTTCCAAAATATTGGTGCAGATCTGCCTCCTCTACTAAATATTGGTGCGACTTTGCTTCGTCTCCAAAATATTAGTGCAACTTTGCCTCTTCTCCAAAATGTTGGTGCAGCTTCACGTCATTTTCAAAATGTTGGTGCAGCTTCACTCCGTCTCCATAAAGGTTGGTGCATTCTTGTTACATCTCCAAATATGATGATACAGCTTCACTCTATCTCTAGAATGCTGGTGTAACTTTGCTATCTCTAGAATGTTGGTGCAGCTCTGCCTCCTCTCCAAAATGTTGGCACAGTTTCACTTAATCTCCAAAATGTTGGTGCAGCTCTGCCTCATCTACTAAATACTGGTGCGATTTTGCTTCATCTCCAAAATGTTGGTACAAGTCTACCTTCTCTCCAAAATATTGGTGCATCTTCACTTCATCCATCTTTAGAATGA

mRNA sequence

ATGTCGATGCAACTTCACTCCATCTCCAGAATGCTAGTGCAGCTTCGCCCCATCTCCAAAATGTTGGTGCATCTTCGCTACATCTTAAAAATGCTAGTGCAGCTTCGCTCCATCTCCAAAATGGTGCTTCACTCTATCTCCAAATATGTTAATGCAGCTTCGCTCCATCTCCAAAATGCTGGTGCAGCTTCGCGGCATTTCCAAAATATTGGTGCAGATCTGCCTCCTCTACTAAATATTGGTGCGACTTTGCTTCGTCTCCAAAATATTAGTGCAACTTTGCCTCTTCTCCAAAATGTTGGTGCAGCTTCACGTCATTTTCAAAATGTTGGTGCAGCTTCACTCCGTCTCCATAAAGCTCTGCCTCCTCTCCAAAATGTTGGCACAGTTTCACTTAATCTCCAAAATGTTGGTGCAGCTCTGCCTCATCTACTAAATACTGGTGCGATTTTGCTTCATCTCCAAAATGTTGGTACAAGTCTACCTTCTCTCCAAAATATTGGTGCATCTTCACTTCATCCATCTTTAGAATGA

Coding sequence (CDS)

ATGTCGATGCAACTTCACTCCATCTCCAGAATGCTAGTGCAGCTTCGCCCCATCTCCAAAATGTTGGTGCATCTTCGCTACATCTTAAAAATGCTAGTGCAGCTTCGCTCCATCTCCAAAATGGTGCTTCACTCTATCTCCAAATATGTTAATGCAGCTTCGCTCCATCTCCAAAATGCTGGTGCAGCTTCGCGGCATTTCCAAAATATTGGTGCAGATCTGCCTCCTCTACTAAATATTGGTGCGACTTTGCTTCGTCTCCAAAATATTAGTGCAACTTTGCCTCTTCTCCAAAATGTTGGTGCAGCTTCACGTCATTTTCAAAATGTTGGTGCAGCTTCACTCCGTCTCCATAAAGCTCTGCCTCCTCTCCAAAATGTTGGCACAGTTTCACTTAATCTCCAAAATGTTGGTGCAGCTCTGCCTCATCTACTAAATACTGGTGCGATTTTGCTTCATCTCCAAAATGTTGGTACAAGTCTACCTTCTCTCCAAAATATTGGTGCATCTTCACTTCATCCATCTTTAGAATGA

Protein sequence

MSMQLHSISRMLVQLRPISKMLVHLRYILKMLVQLRSISKMVLHSISKYVNAASLHLQNAGAASRHFQNIGADLPPLLNIGATLLRLQNISATLPLLQNVGAASRHFQNVGAASLRLHKALPPLQNVGTVSLNLQNVGAALPHLLNTGAILLHLQNVGTSLPSLQNIGASSLHPSLE
Homology
BLAST of ClCG08G002250.1 vs. NCBI nr
Match: EAW51470.1 (hCG2042692, partial [Homo sapiens])

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-06
Identity = 45/127 (35.43%), Postives = 63/127 (49.61%), Query Frame = 0

Query: 54  SLHLQNAGAASRHFQNIGADLPPLLNIGATLLRLQNISATLPLLQNVGAASRHFQNVGAA 113
           +LHL+N G  + H +N G   P L N G     L+N     P L+N G  +   +N G  
Sbjct: 24  ALHLENNGCLAPHVENNGRLAPHLENKGRLTPHLENNGRLTPHLENKGRLTPDLENNGCL 83

Query: 114 SLRLH---KALPPLQNVGTVSLNLQNVGAALPHLLNTGAILLHLQNVGTSLPSLQNIGAS 173
           +  L    +  P L+N G ++ +L+N G   PHL N G +  HL+N G   P L+N G  
Sbjct: 84  TPHLENNGRLTPDLENNGRLTPDLENNGRLTPHLENNGRLTPHLENNGRLTPHLENNG-- 143

Query: 174 SLHPSLE 178
            L P LE
Sbjct: 144 RLAPQLE 148

BLAST of ClCG08G002250.1 vs. NCBI nr
Match: GCB85941.1 (hypothetical protein [Scyliorhinus torazame])

HSP 1 Score: 61.6 bits (148), Expect = 7.8e-06
Identity = 42/127 (33.07%), Postives = 71/127 (55.91%), Query Frame = 0

Query: 47  SKYVNAASLHLQNAGAASRHFQNIGADLPPLLNIGATLLRLQNISATLPLLQNVGAASRH 106
           SK   AA LH ++ GAA RH ++ GA +   ++ GA +L  ++  +     ++ GAA  H
Sbjct: 2   SKDSGAAVLHSEDTGAAVRHSEDTGAAVLHSVDTGAAVLPSEDTGSIGLHSEDTGAAVLH 61

Query: 107 FQNVGAASLRLHKALPPLQNVGTVSLNLQNVGAALPHLLNTGAILLHLQNVGTSLPSLQN 166
            ++ GAA L       P ++ G + L+ ++ GAA+ H  +TGA  LH ++ G ++   +N
Sbjct: 62  SEDTGAAVL-------PSEDTGAIGLHSEDSGAAVLHSEDTGAAALHSEDSGAAVLHSEN 121

Query: 167 IGASSLH 174
            GA+ LH
Sbjct: 122 SGAAVLH 121

BLAST of ClCG08G002250.1 vs. NCBI nr
Match: MBS1937939.1 (hypothetical protein [Bacteroidetes bacterium])

HSP 1 Score: 58.2 bits (139), Expect = 8.6e-05
Identity = 41/112 (36.61%), Postives = 50/112 (44.64%), Query Frame = 0

Query: 57  LQNAGAASRHFQNIGADLPPLLNIGATLLRLQNISATLPLLQNVGAASRHFQNVGAASLR 116
           LQ  G   +  Q +G  L  L  +G  L  LQ +   L  LQ VG   +  Q VG     
Sbjct: 2   LQEVGTGLQDLQEVGTGLQDLQEVGTGLQDLQEVGTGLQDLQEVGTGLQDLQEVGT---- 61

Query: 117 LHKALPPLQNVGTVSLNLQNVGAALPHLLNTGAILLHLQNVGTSLPSLQNIG 169
               L  LQ VGT   +L+ VG  L  L   G  L  LQ VGT LP +Q +G
Sbjct: 62  ---GLQDLQEVGTGLQDLREVGTGLQDLREVGTGLQDLQEVGTGLPDVQEVG 106

BLAST of ClCG08G002250.1 vs. ExPASy TrEMBL
Match: A0A401QKK1 (Uncharacterized protein (Fragment) OS=Scyliorhinus torazame OX=75743 GN=scyTo_0026638 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.8e-06
Identity = 42/127 (33.07%), Postives = 71/127 (55.91%), Query Frame = 0

Query: 47  SKYVNAASLHLQNAGAASRHFQNIGADLPPLLNIGATLLRLQNISATLPLLQNVGAASRH 106
           SK   AA LH ++ GAA RH ++ GA +   ++ GA +L  ++  +     ++ GAA  H
Sbjct: 2   SKDSGAAVLHSEDTGAAVRHSEDTGAAVLHSVDTGAAVLPSEDTGSIGLHSEDTGAAVLH 61

Query: 107 FQNVGAASLRLHKALPPLQNVGTVSLNLQNVGAALPHLLNTGAILLHLQNVGTSLPSLQN 166
            ++ GAA L       P ++ G + L+ ++ GAA+ H  +TGA  LH ++ G ++   +N
Sbjct: 62  SEDTGAAVL-------PSEDTGAIGLHSEDSGAAVLHSEDTGAAALHSEDSGAAVLHSEN 121

Query: 167 IGASSLH 174
            GA+ LH
Sbjct: 122 SGAAVLH 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
EAW51470.11.2e-0635.43hCG2042692, partial [Homo sapiens][more]
GCB85941.17.8e-0633.07hypothetical protein [Scyliorhinus torazame][more]
MBS1937939.18.6e-0536.61hypothetical protein [Bacteroidetes bacterium][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A401QKK13.8e-0633.07Uncharacterized protein (Fragment) OS=Scyliorhinus torazame OX=75743 GN=scyTo_00... [more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG08G002250ClCG08G002250gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG08G002250.1-exonClCG08G002250.1-exon-CG_Chr08:4748307..4748482exon
ClCG08G002250.1-exonClCG08G002250.1-exon-CG_Chr08:4748582..4748813exon
ClCG08G002250.1-exonClCG08G002250.1-exon-CG_Chr08:4748910..4749035exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG08G002250.1-cdsClCG08G002250.1-cds-CG_Chr08:4748307..4748482CDS
ClCG08G002250.1-cdsClCG08G002250.1-cds-CG_Chr08:4748582..4748813CDS
ClCG08G002250.1-cdsClCG08G002250.1-cds-CG_Chr08:4748910..4749035CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG08G002250.1ClCG08G002250.1-proteinpolypeptide