ClCG07G010510.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG07G010510.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	VQ domain-containing protein
Location	CG_Chr07: 26261230 .. 26261472 (+)
Sequence length	243
RNA-Seq Expression	ClCG07G010510.1
Synteny	ClCG07G010510.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCAACTCACTCAACTAGGGTTGTGATTATTGACACCAAGTATGTACAAACGGATGCCAAGAGCTTCAAGACGGTGGTGCAAAAGCTGACGGGGAAAGATCCGGTAGTCGCAGTGGCGGAGGAGAACCGACATACCCGCAGCGCCCGGAACTCGGGTCTTTTGAGAGATTCATCGTTCAAGGAGTTCCAGAGAGTGCTGAGAGAGATGCCAAGAATTGATGAGCTTTATTCTGATTGA

mRNA sequence

ATGGAAGCAACTCACTCAACTAGGGTTGTGATTATTGACACCAAGTATGTACAAACGGATGCCAAGAGCTTCAAGACGGTGGTGCAAAAGCTGACGGGGAAAGATCCGGTAGTCGCAGTGGCGGAGGAGAACCGACATACCCGCAGCGCCCGGAACTCGGGTCTTTTGAGAGATTCATCGTTCAAGGAGTTCCAGAGAGTGCTGAGAGAGATGCCAAGAATTGATGAGCTTTATTCTGATTGA

Coding sequence (CDS)

ATGGAAGCAACTCACTCAACTAGGGTTGTGATTATTGACACCAAGTATGTACAAACGGATGCCAAGAGCTTCAAGACGGTGGTGCAAAAGCTGACGGGGAAAGATCCGGTAGTCGCAGTGGCGGAGGAGAACCGACATACCCGCAGCGCCCGGAACTCGGGTCTTTTGAGAGATTCATCGTTCAAGGAGTTCCAGAGAGTGCTGAGAGAGATGCCAAGAATTGATGAGCTTTATTCTGATTGA

Protein sequence

MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVAVAEENRHTRSARNSGLLRDSSFKEFQRVLREMPRIDELYSD

Homology

[Close]

BLAST of ClCG07G010510.1 vs. NCBI nr
Match: KAA0063001.1 (VQ motif-containing protein 1-like [Cucumis melo var. makuwa] >TYK16346.1 VQ motif-containing protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 135.6 bits (340), Expect = 1.9e-28
Identity = 74/81 (91.36%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1  MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVAVAEE-NRHTRSARNSGLLRDS 60
          MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKD VVAV EE  R T SARNS LLRDS
Sbjct: 1  MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVAVGEEIRRQTGSARNSSLLRDS 60

Query: 61 SFKEFQRVLREMPRIDELYSD 81
          SFKEFQRVLREMPRIDELYSD
Sbjct: 61 SFKEFQRVLREMPRIDELYSD 81

[Close]

BLAST of ClCG07G010510.1 vs. NCBI nr
Match: KGN53544.1 (hypothetical protein Csa_014778 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 9.5e-28
Identity = 73/81 (90.12%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1  MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVAVAEE-NRHTRSARNSGLLRDS 60
          MEA HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKD VV VAEE  R T SARNS LLRDS
Sbjct: 1  MEAPHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDS 60

Query: 61 SFKEFQRVLREMPRIDELYSD 81
          SFKEFQRVLREMPRIDELYSD
Sbjct: 61 SFKEFQRVLREMPRIDELYSD 81

[Close]

BLAST of ClCG07G010510.1 vs. NCBI nr
Match: XP_038889427.1 (VQ motif-containing protein 1-like [Benincasa hispida])

HSP 1 Score: 132.9 bits (333), Expect = 1.2e-27
Identity = 71/80 (88.75%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 1  MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVAVAEENRHTRSARNSGLLRDSS 60
          MEA HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKD V    EENRHT   RNSGLLRDSS
Sbjct: 1  MEAAHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSV--AEEENRHTGGTRNSGLLRDSS 60

Query: 61 FKEFQRVLREMPRIDELYSD 81
          FKEFQRVLREMPRIDELYSD
Sbjct: 61 FKEFQRVLREMPRIDELYSD 78

[Close]

BLAST of ClCG07G010510.1 vs. NCBI nr
Match: KAG6577059.1 (VQ motif-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015070.1 VQ motif-containing protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.5 bits (293), Expect = 5.4e-23
Identity = 64/73 (87.67%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 3  ATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVAVAEENRHTRSARNSGLLRDSSFK 62
          A +STRVVIIDTKYVQTDAKSFKTVVQKLTGKDP   VAEENRH   ARNS LLRDSSFK
Sbjct: 2  AAYSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDP---VAEENRHGDGARNSSLLRDSSFK 61

Query: 63 EFQRVLREMPRID 76
          EFQRVLREMPRID
Sbjct: 62 EFQRVLREMPRID 71

[Close]

BLAST of ClCG07G010510.1 vs. NCBI nr
Match: XP_022942030.1 (VQ motif-containing protein 1 [Cucurbita moschata])

HSP 1 Score: 92.4 bits (228), Expect = 1.9e-15
Identity = 53/71 (74.65%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 5  HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVAVAEENRHTRSARNSGL-LRDSSFKE 64
          HSTRVVIIDTKYV TDAKSFKTVVQKLTGKDP V   EENR T    +SGL + DSSFK+
Sbjct: 7  HSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAV---EENRQTSGGWSSGLVITDSSFKK 66

Query: 65 FQRVLREMPRI 75
          FQ  LREMP I
Sbjct: 67 FQTELREMPTI 74

[Close]

BLAST of ClCG07G010510.1 vs. ExPASy Swiss-Prot
Match: Q8VYI5 (VQ motif-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=VQ10 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-07
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 8   RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVA--------------------VAEENRHT 67
           +VV I+T+YV+TDA+SFKTVVQ+LTGK+ +VA                    + E+ R  
Sbjct: 13  KVVFINTQYVETDARSFKTVVQELTGKNAIVAAGPFDSPSAFDGRCYDGGSKIGEDTRQL 72

Query: 68  RSARNSGLLRDSSFKEFQRVLREMPRIDELY 79
                 G  R  +  EF R+ +EMP ++ELY
Sbjct: 73  HGGGGGG-GRMGTTTEFDRLFKEMPHMEELY 102

[Close]

BLAST of ClCG07G010510.1 vs. ExPASy Swiss-Prot
Match: Q1G3U8 (VQ motif-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=VQ1 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-06
Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVAVAEENRHTRSARNSGLLRDSSFK----- 67
          +VV I+T+YVQTDA+SFKT+VQ+LTGK+ VVA   +  +  S +  G  +DSS +     
Sbjct: 11 KVVFINTQYVQTDARSFKTIVQELTGKNAVVA---DGPYEFSGQGYG-GKDSSQRFCGVG 70

Query: 68 ----------EFQRVLREMPRIDELYS 80
                    EF    REMP + ELY+
Sbjct: 71 KEAERGVETTEFDSFFREMPPVGELYN 93

[Close]

BLAST of ClCG07G010510.1 vs. ExPASy TrEMBL
Match: A0A5A7VBD1 (VQ motif-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001280 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 9.3e-29
Identity = 74/81 (91.36%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1  MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVAVAEE-NRHTRSARNSGLLRDS 60
          MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKD VVAV EE  R T SARNS LLRDS
Sbjct: 1  MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVAVGEEIRRQTGSARNSSLLRDS 60

Query: 61 SFKEFQRVLREMPRIDELYSD 81
          SFKEFQRVLREMPRIDELYSD
Sbjct: 61 SFKEFQRVLREMPRIDELYSD 81

[Close]

BLAST of ClCG07G010510.1 vs. ExPASy TrEMBL
Match: A0A0A0KXJ0 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G075740 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.6e-28
Identity = 73/81 (90.12%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1  MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVAVAEE-NRHTRSARNSGLLRDS 60
          MEA HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKD VV VAEE  R T SARNS LLRDS
Sbjct: 1  MEAPHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDS 60

Query: 61 SFKEFQRVLREMPRIDELYSD 81
          SFKEFQRVLREMPRIDELYSD
Sbjct: 61 SFKEFQRVLREMPRIDELYSD 81

[Close]

BLAST of ClCG07G010510.1 vs. ExPASy TrEMBL
Match: A0A6J1FVF7 (VQ motif-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111447218 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 9.0e-16
Identity = 53/71 (74.65%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 5  HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVAVAEENRHTRSARNSGL-LRDSSFKE 64
          HSTRVVIIDTKYV TDAKSFKTVVQKLTGKDP V   EENR T    +SGL + DSSFK+
Sbjct: 7  HSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAV---EENRQTSGGWSSGLVITDSSFKK 66

Query: 65 FQRVLREMPRI 75
          FQ  LREMP I
Sbjct: 67 FQTELREMPTI 74

[Close]

BLAST of ClCG07G010510.1 vs. ExPASy TrEMBL
Match: A0A6J1CNV7 (VQ motif-containing protein 10-like OS=Momordica charantia OX=3673 GN=LOC111012826 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.8e-15
Identity = 50/69 (72.46%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 6  STRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVAVAEENRH-TRSARNSGLLRDSSFKEF 65
          STRVVIIDTKYV TDAKSFKTVVQKLTGKDP  A  E+ R     + +S L RDSSFKEF
Sbjct: 8  STRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAAAAEEDRRSGGGGSGSSSLTRDSSFKEF 67

Query: 66 QRVLREMPR 74
          QRVLREM +
Sbjct: 68 QRVLREMAK 76

[Close]

BLAST of ClCG07G010510.1 vs. ExPASy TrEMBL
Match: A0A4D6M6V8 (VQ domain-containing protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g960 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.8e-11
Identity = 44/76 (57.89%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVV--AVAEENRHTR-SARNSGLLRDSSFKEF 67
          +VVII+T+YV+TDA SFK+VVQKLTGKD     A AE NRH +     S L+RD SFK+F
Sbjct: 12 KVVIINTQYVETDATSFKSVVQKLTGKDSDTSGAKAERNRHDKGGVPRSFLMRDVSFKDF 71

Query: 68 QRVLREMPRIDELYSD 81
           R+LREMP I++L+++
Sbjct: 72 DRLLREMPPINDLWAE 87

[Close]

BLAST of ClCG07G010510.1 vs. TAIR 10
Match: AT1G78410.1 (VQ motif-containing protein )

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-08
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 8   RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVA--------------------VAEENRHT 67
           +VV I+T+YV+TDA+SFKTVVQ+LTGK+ +VA                    + E+ R  
Sbjct: 13  KVVFINTQYVETDARSFKTVVQELTGKNAIVAAGPFDSPSAFDGRCYDGGSKIGEDTRQL 72

Query: 68  RSARNSGLLRDSSFKEFQRVLREMPRIDELY 79
                 G  R  +  EF R+ +EMP ++ELY
Sbjct: 73  HGGGGGG-GRMGTTTEFDRLFKEMPHMEELY 102

[Close]

BLAST of ClCG07G010510.1 vs. TAIR 10
Match: AT1G17147.1 (VQ motif-containing protein )

HSP 1 Score: 53.5 bits (127), Expect = 8.9e-08
Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVAVAEENRHTRSARNSGLLRDSSFK----- 67
          +VV I+T+YVQTDA+SFKT+VQ+LTGK+ VVA   +  +  S +  G  +DSS +     
Sbjct: 11 KVVFINTQYVQTDARSFKTIVQELTGKNAVVA---DGPYEFSGQGYG-GKDSSQRFCGVG 70

Query: 68 ----------EFQRVLREMPRIDELYS 80
                    EF    REMP + ELY+
Sbjct: 71 KEAERGVETTEFDSFFREMPPVGELYN 93

The following BLAST results are available for this feature:

BLAST of ClCG07G010510.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063001.1	1.9e-28	91.36	VQ motif-containing protein 1-like [Cucumis melo var. makuwa] >TYK16346.1 VQ mot...	[more]
KGN53544.1	9.5e-28	90.12	hypothetical protein Csa_014778 [Cucumis sativus]	[more]
XP_038889427.1	1.2e-27	88.75	VQ motif-containing protein 1-like [Benincasa hispida]	[more]
KAG6577059.1	5.4e-23	87.67	VQ motif-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia] >...	[more]
XP_022942030.1	1.9e-15	74.65	VQ motif-containing protein 1 [Cucurbita moschata]	[more]

BLAST of ClCG07G010510.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYI5	1.5e-07	38.46	VQ motif-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=VQ10 PE=1 SV=1	[more]
Q1G3U8	1.3e-06	42.53	VQ motif-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=VQ1 PE=1 SV=1	[more]

BLAST of ClCG07G010510.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VBD1	9.3e-29	91.36	VQ motif-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A0A0KXJ0	4.6e-28	90.12	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G075740 PE=4 SV=...	[more]
A0A6J1FVF7	9.0e-16	74.65	VQ motif-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111447218 PE=4...	[more]
A0A6J1CNV7	5.8e-15	72.46	VQ motif-containing protein 10-like OS=Momordica charantia OX=3673 GN=LOC1110128...	[more]
A0A4D6M6V8	1.8e-11	57.89	VQ domain-containing protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g960 PE=4 ...	[more]

BLAST of ClCG07G010510.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78410.1	1.1e-08	38.46	VQ motif-containing protein	[more]
AT1G17147.1	8.9e-08	42.53	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 11..36 e-value: 6.0E-11 score: 41.6
None	No IPR available	PANTHER	PTHR34777:SF1	VQ MOTIF-CONTAINING PROTEIN 10	coord: 4..79
IPR039608	VQ motif-containing protein 1/10	PANTHER	PTHR34777	VQ MOTIF-CONTAINING PROTEIN 10	coord: 4..79

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG07G010510	ClCG07G010510	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG07G010510.1-exon	ClCG07G010510.1-exon-CG_Chr07:26261230..26261472	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG07G010510.1-cds	ClCG07G010510.1-cds-CG_Chr07:26261230..26261472	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG07G010510.1	ClCG07G010510.1-protein	polypeptide