ClCG07G010410.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG07G010410.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	glycine-rich protein 5-like
Location	CG_Chr07: 26113784 .. 26114170 (-)
Sequence length	387
RNA-Seq Expression	ClCG07G010410.1
Synteny	ClCG07G010410.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAACTTATGGCATAGTTCTGATAGTTTGTGGGTCTGTGATAGCGGCGATAGTGATTTTATGTTGTGTTTGTAAGTTTGGAAGCCGTAAGAAGAAGAAAACAATTACGAAGTCCACATATTTACCCAATGCTGCTCCGCAGAGGAACCCTGATCTTGAACGTGGCCAACTTAATAAGAACAATGGAGGAATGACTATCCTTGCTGGAGCAGCTGCTGGTTTAGCTACTACTGCTGTCCTTACCAATTTAAGCAGTGGCGGTGGCGGTGGCGGTGGCGGCGGCAGTGGTGACAGTGGCGGTGGTGGTGACAGTGGCGGCGGTGGTTGTGGTGGTGGCTGTGGTGGTGGTTGTGGTGGTGGTTGTGGTGGCGGTTGTGGTGGTTGA

mRNA sequence

ATGAAAACTTATGGCATAGTTCTGATAGTTTGTGGGTCTGTGATAGCGGCGATAGTGATTTTATGTTGTGTTTGTAAGTTTGGAAGCCGTAAGAAGAAGAAAACAATTACGAAGTCCACATATTTACCCAATGCTGCTCCGCAGAGGAACCCTGATCTTGAACGTGGCCAACTTAATAAGAACAATGGAGGAATGACTATCCTTGCTGGAGCAGCTGCTGGTTTAGCTACTACTGCTGTCCTTACCAATTTAAGCAGTGGCGGTGGCGGTGGCGGTGGCGGCGGCAGTGGTGACAGTGGCGGTGGTGGTGACAGTGGCGGCGGTGGTTGTGGTGGTGGCTGTGGTGGTGGTTGTGGTGGTGGTTGTGGTGGCGGTTGTGGTGGTTGA

Coding sequence (CDS)

ATGAAAACTTATGGCATAGTTCTGATAGTTTGTGGGTCTGTGATAGCGGCGATAGTGATTTTATGTTGTGTTTGTAAGTTTGGAAGCCGTAAGAAGAAGAAAACAATTACGAAGTCCACATATTTACCCAATGCTGCTCCGCAGAGGAACCCTGATCTTGAACGTGGCCAACTTAATAAGAACAATGGAGGAATGACTATCCTTGCTGGAGCAGCTGCTGGTTTAGCTACTACTGCTGTCCTTACCAATTTAAGCAGTGGCGGTGGCGGTGGCGGTGGCGGCGGCAGTGGTGACAGTGGCGGTGGTGGTGACAGTGGCGGCGGTGGTTGTGGTGGTGGCTGTGGTGGTGGTTGTGGTGGTGGTTGTGGTGGCGGTTGTGGTGGTTGA

Protein sequence

MKTYGIVLIVCGSVIAAIVILCCVCKFGSRKKKKTITKSTYLPNAAPQRNPDLERGQLNKNNGGMTILAGAAAGLATTAVLTNLSSGGGGGGGGGSGDSGGGGDSGGGGCGGGCGGGCGGGCGGGCGG

Homology

[Close]

BLAST of ClCG07G010410.1 vs. NCBI nr
Match: XP_038889436.1 (acanthoscurrin-1-like [Benincasa hispida])

HSP 1 Score: 121.7 bits (304), Expect = 4.6e-24
Identity = 96/128 (75.00%), Postives = 102/128 (79.69%), Query Frame = 0


Query: 1   MKTYGIVLIVCGSVIAAIVILCCVCKFGSRKKKKTITKSTYLPNAAPQRNPDLERGQLNK 60
           MKTYGIVLI CGSVIA I+IL CVCKFG RK  KT+   TY+PNAA QRNPDLERGQ NK
Sbjct: 1   MKTYGIVLITCGSVIAGIMILRCVCKFGGRKIMKTV---TYIPNAASQRNPDLERGQPNK 60

Query: 61  NNGGMTILAGAAAGLATTAVLTNLSSGGGGGGGGGSGDSGGGGDSGGGGCGGGCGGGCGG 120
           NNGG+TILAGAAAGLAT AV+TNL +   GGGGG  G  G GGDSGGG  GGGCG   GG
Sbjct: 61  NNGGITILAGAAAGLATAAVVTNLGNDDTGGGGGCGG--GEGGDSGGGCGGGGCG---GG 120

Query: 121 GCGGGCGG 129
           GCGGGCGG
Sbjct: 121 GCGGGCGG 120

[Close]

BLAST of ClCG07G010410.1 vs. NCBI nr
Match: KGN53550.1 (hypothetical protein Csa_015259 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 4.3e-22
Identity = 94/130 (72.31%), Postives = 101/130 (77.69%), Query Frame = 0


Query: 1   MKTYGIVLIVCGSVIAAIVILCCVCKFGSRKKKKTITKSTYLPNAAPQRNPDLERGQL-- 60
           MKTY IVLI  GSVI A++IL CVCKFG  +KKKTIT +  +P   PQRN D+ERGQL  
Sbjct: 1   MKTYAIVLIAGGSVIGAVMILWCVCKFGRSRKKKTITYN--MPKRTPQRNLDIERGQLPK 60

Query: 61  NKNNGGMTILAGAAAGLATTAVLTNLSSGGGGGGG-GGSGDSGGGGDSGGGGCGGGCGGG 120
           N NNGGMTIL GAAAGLAT AV+T LSS GGGGGG  GSG  G GG  GGGGCGGGC GG
Sbjct: 61  NNNNGGMTILGGAAAGLATAAVVTTLSSSGGGGGGDSGSGGDGDGG--GGGGCGGGC-GG 120

Query: 121 CGGGCGGGCG 128
           CGGGCGGGCG
Sbjct: 121 CGGGCGGGCG 125

[Close]

BLAST of ClCG07G010410.1 vs. NCBI nr
Match: KAG6577050.1 (hypothetical protein SDJN03_24624, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.8 bits (281), Expect = 2.1e-21
Identity = 90/132 (68.18%), Postives = 99/132 (75.00%), Query Frame = 0


Query: 1   MKTYGIVLIVCGSVIAAIVILCCVCKFGSRKKKK----TITKSTYLPNAAPQRNPDLERG 60
           M+TY IVLI CG VIA+ VIL CVC +G RKKKK    T T S   P   P R  DLE G
Sbjct: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSR--DLELG 60

Query: 61  QLNKNNGGMTILAGAAAGLATTAVLTNLSSGGGGGGGGGSGDSGGGGDSGGGGCGGGCGG 120
           +    NGGMTILAGAAAGLAT AV+T+L++ GGGGGGGG G+  GGGD GGGGCGGGCGG
Sbjct: 61  E--AKNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGGGEE-GGGDGGGGGCGGGCGG 120

Query: 121 GCGGGCGGGCGG 129
           GCGGGCGGGCGG
Sbjct: 121 GCGGGCGGGCGG 127

[Close]

BLAST of ClCG07G010410.1 vs. NCBI nr
Match: XP_023552868.1 (glycine-rich protein DOT1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 109.4 bits (272), Expect = 2.4e-20
Identity = 89/132 (67.42%), Postives = 96/132 (72.73%), Query Frame = 0


Query: 1   MKTYGIVLIVCGSVIAAIVILCCVCKFGSRKKKK----TITKSTYLPNAAPQRNPDLERG 60
           M+TY IVLI CG VIA+ VIL CVC +G RKKKK    T T S   P   P R  DLE G
Sbjct: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSR--DLELG 60

Query: 61  QLNKNNGGMTILAGAAAGLATTAVLTNLSSGGGGGGGGGSGDSGGGGDSGGGGCGGGCGG 120
           +    NGGMTILAGAAAGLAT AV+T+LS+ GGGGGGG  G   GGG  GGGGCGGGCGG
Sbjct: 61  E--AKNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGEEGGGDGGGGDGGGGCGGGCGG 120

Query: 121 GCGGGCGGGCGG 129
           GCGGGCGGGCGG
Sbjct: 121 GCGGGCGGGCGG 128

[Close]

BLAST of ClCG07G010410.1 vs. NCBI nr
Match: XP_022985127.1 (glycine-rich protein 5-like [Cucurbita maxima])

HSP 1 Score: 108.6 bits (270), Expect = 4.0e-20
Identity = 89/132 (67.42%), Postives = 96/132 (72.73%), Query Frame = 0


Query: 1   MKTYGIVLIVCGSVIAAIVILCCVCKFGSRKKKK----TITKSTYLPNAAPQRNPDLERG 60
           M+TY IVLI  G VIA+ VIL CVC +G RKKKK    T T S   P   P R  DLE G
Sbjct: 1   MRTYAIVLITSGCVIASAVILWCVCSYGGRKKKKTAPPTYTSSALRPTPRPSR--DLELG 60

Query: 61  QLNKNNGGMTILAGAAAGLATTAVLTNLSSGGGGGGGGGSGDSGGGGDSGGGGCGGGCGG 120
           +    NGGMTILAGAAAGLAT AV+T+LS+ GGGGGGGG G   GGG  GGGGCGGGCGG
Sbjct: 61  E--AKNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGGEGGDDGGGGDGGGGCGGGCGG 120

Query: 121 GCGGGCGGGCGG 129
           GCGGGCGGGCGG
Sbjct: 121 GCGGGCGGGCGG 128

[Close]

BLAST of ClCG07G010410.1 vs. ExPASy TrEMBL
Match: A0A0A0KVE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G081280 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.1e-22
Identity = 94/130 (72.31%), Postives = 101/130 (77.69%), Query Frame = 0


Query: 1   MKTYGIVLIVCGSVIAAIVILCCVCKFGSRKKKKTITKSTYLPNAAPQRNPDLERGQL-- 60
           MKTY IVLI  GSVI A++IL CVCKFG  +KKKTIT +  +P   PQRN D+ERGQL  
Sbjct: 1   MKTYAIVLIAGGSVIGAVMILWCVCKFGRSRKKKTITYN--MPKRTPQRNLDIERGQLPK 60

Query: 61  NKNNGGMTILAGAAAGLATTAVLTNLSSGGGGGGG-GGSGDSGGGGDSGGGGCGGGCGGG 120
           N NNGGMTIL GAAAGLAT AV+T LSS GGGGGG  GSG  G GG  GGGGCGGGC GG
Sbjct: 61  NNNNGGMTILGGAAAGLATAAVVTTLSSSGGGGGGDSGSGGDGDGG--GGGGCGGGC-GG 120

Query: 121 CGGGCGGGCG 128
           CGGGCGGGCG
Sbjct: 121 CGGGCGGGCG 125

[Close]

BLAST of ClCG07G010410.1 vs. ExPASy TrEMBL
Match: A0A6J1J409 (glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111483210 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.9e-20
Identity = 89/132 (67.42%), Postives = 96/132 (72.73%), Query Frame = 0


Query: 1   MKTYGIVLIVCGSVIAAIVILCCVCKFGSRKKKK----TITKSTYLPNAAPQRNPDLERG 60
           M+TY IVLI  G VIA+ VIL CVC +G RKKKK    T T S   P   P R  DLE G
Sbjct: 1   MRTYAIVLITSGCVIASAVILWCVCSYGGRKKKKTAPPTYTSSALRPTPRPSR--DLELG 60

Query: 61  QLNKNNGGMTILAGAAAGLATTAVLTNLSSGGGGGGGGGSGDSGGGGDSGGGGCGGGCGG 120
           +    NGGMTILAGAAAGLAT AV+T+LS+ GGGGGGGG G   GGG  GGGGCGGGCGG
Sbjct: 61  E--AKNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGGEGGDDGGGGDGGGGCGGGCGG 120

Query: 121 GCGGGCGGGCGG 129
           GCGGGCGGGCGG
Sbjct: 121 GCGGGCGGGCGG 128

[Close]

BLAST of ClCG07G010410.1 vs. ExPASy TrEMBL
Match: A0A6J1EY84 (glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111437551 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.1e-19
Identity = 90/134 (67.16%), Postives = 98/134 (73.13%), Query Frame = 0


Query: 1   MKTYGIVLIVCGSVIAAIVILCCVCKFGSRKKKK----TITKSTYLPNAAPQRNPDLERG 60
           M+TY IVLI CG VIA+ VIL CVC +G RKKKK    T T S   P   P R  DLE G
Sbjct: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSR--DLELG 60

Query: 61  QLNKNNGGMTILAGAAAGLATTAVLTNLSSGGGGGGGGG--SGDSGGGGDSGGGGCGGGC 120
           +    NGGMTILAGAAAGLAT AV+T+L++ GGGGGGGG   G  G GGD GGGGCGGGC
Sbjct: 61  E--AKNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGEEGGGDGSGGD-GGGGCGGGC 120

Query: 121 GGGCGGGCGGGCGG 129
           GGGCGGGCGGGCGG
Sbjct: 121 GGGCGGGCGGGCGG 129

[Close]

BLAST of ClCG07G010410.1 vs. ExPASy TrEMBL
Match: A0A438I7N4 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_041641 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.7e-13
Identity = 63/116 (54.31%), Postives = 80/116 (68.97%), Query Frame = 0


Query: 1   MKTYGIVLIVCGSVIAAIVILCCVCKFGSRKKKKTITKSTYLPNAAPQRNPDLERGQLNK 60
           MK Y +VLI CGSV  AIV+LCC+CK   ++K+  + +ST  P +A +   D+E+GQ +K
Sbjct: 1   MKAYAVVLIACGSVAVAIVVLCCLCKGDGKRKRPDVQRSTAAPRSAQKTYSDMEKGQTSK 60

Query: 61  N----NGGMTILAGAAAGLATTAVLTNLSSGGGGGGGGGSGDSGGGGDSGGGGCGG 113
           +    +G M ILAGA A +A TAV+T  SSGGGGG GGG G  GGGG  GGGGCGG
Sbjct: 61  SSDSKDGKMVILAGAGAVIAATAVVT-ASSGGGGGCGGGGGGCGGGGGCGGGGCGG 115

[Close]

BLAST of ClCG07G010410.1 vs. ExPASy TrEMBL
Match: A0A438G759 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_065040 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.3e-12
Identity = 69/131 (52.67%), Postives = 86/131 (65.65%), Query Frame = 0


Query: 1   MKTYGIVLIVCGSVIAAIVILCCVCKFGSRKKKKTITKSTYLPNAAPQRNPDLERGQLNK 60
           MK Y +VLI CGSV  AIV+LCC+CK   ++K+  + +ST  P +A +   D+E+GQ +K
Sbjct: 1   MKAYAVVLIACGSVAVAIVVLCCLCKGDGKRKRPDVQRSTAAPRSAQKTYSDMEKGQTSK 60

Query: 61  NNGG----MTILAGAAAGLATTAVLTNLSSGGGGGGGGGSGDSGGGGDSGGGGCGGGCGG 120
           ++G     M ILAGA A +A TAV+T  S GG GGGGGG G        GGGGCGGG GG
Sbjct: 61  SSGSKDGKMVILAGAGAVIAATAVVTASSGGGCGGGGGGCG-------GGGGGCGGGGGG 120

Query: 121 GCGGGCGGGCG 128
           GCG   GGGCG
Sbjct: 121 GCG---GGGCG 121

The following BLAST results are available for this feature:

BLAST of ClCG07G010410.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889436.1	4.6e-24	75.00	acanthoscurrin-1-like [Benincasa hispida]	[more]
KGN53550.1	4.3e-22	72.31	hypothetical protein Csa_015259 [Cucumis sativus]	[more]
KAG6577050.1	2.1e-21	68.18	hypothetical protein SDJN03_24624, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023552868.1	2.4e-20	67.42	glycine-rich protein DOT1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022985127.1	4.0e-20	67.42	glycine-rich protein 5-like [Cucurbita maxima]	[more]

BLAST of ClCG07G010410.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG07G010410.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVE1	2.1e-22	72.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G081280 PE=4 SV=1	[more]
A0A6J1J409	1.9e-20	67.42	glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111483210 PE=4 SV=...	[more]
A0A6J1EY84	2.1e-19	67.16	glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111437551 PE=4 S...	[more]
A0A438I7N4	6.7e-13	54.31	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_041641 PE=4 SV=1	[more]
A0A438G759	3.3e-12	52.67	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_065040 PE=4 SV=1	[more]

BLAST of ClCG07G010410.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG07G010410	ClCG07G010410	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG07G010410.1-exon	ClCG07G010410.1-exon-CG_Chr07:26113784..26114170	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG07G010410.1-cds	ClCG07G010410.1-cds-CG_Chr07:26113784..26114170	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG07G010410.1	ClCG07G010410.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane