ClCG07G008910.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview
NameClCG07G008910.1
TypemRNA
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionPMD domain-containing protein
LocationCG_Chr07: 23544689 .. 23545222 (+)
Sequence length402
RNA-Seq ExpressionClCG07G008910.1
SyntenyClCG07G008910.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCATACATGTGATACGCTTAGCAGACGTCACTAGGAAAAGAGCTCTGTTACTCCATGCCTTATGCATTGGCCTTTCAATTGATGTCGGGCAAGTCATACGTGCATCGATCCGAAGGACTGCTAGAGGGTCGACCATTGGTGGTCTCGAACACCTCTCCTTGTTCACCGAACTATGTAGGAGGGCTAGGGTTGAAATAGGTCAGGGGGGAGAGAATAGGCCCCAAGTCAACCCTTGATAGGACTTCCATCGCCGCCTTCGAGGTCAACTAGACCAAAAGGCAGCGCATGAGGACGACGTAGGTGATGGTTCACATGGGGGCTAAGAGGTAGGAGCTATAAATGAACCCAGAGAGCTAGAGAGAGAGAGGAGAGTCAGTTGGACCATATTTAGAGGATTGGCACTCATAATGCCACTGAGCTTCGACCTCTCCATAGAGATGTCCGGTATGTCATGGACAAGCAAGATCTCTACTTCGCTCATAAGTTTTGACCCTCACCTTCCTAGGCCACGTTCTCCTGGTTATGATTCTTAG

mRNA sequence

TTCATACATGTGATACGCTTAGCAGACGTCACTAGGAAAAGAGCTCTGTTACTCCATGCCTTATGCATTGGCCTTTCAATTGATGTCGGGCAAGTCATACGTGCATCGATCCGAAGGACTGCTAGAGGGTCGACCATTGGTGGTCTCGAACACCTCTCCTTGTTCACCGAACTATGTAGGAGGGCTAGGGTTGAAATAGGAGCTATAAATGAACCCAGAGAGCTAGAGAGAGAGAGGAGAGTCAGTTGGACCATATTTAGAGGATTGGCACTCATAATGCCACTGAGCTTCGACCTCTCCATAGAGATGTCCGGTATGTCATGGACAAGCAAGATCTCTACTTCGCTCATAAGTTTTGACCCTCACCTTCCTAGGCCACGTTCTCCTGGTTATGATTCTTAG

Coding sequence (CDS)

TTCATACATGTGATACGCTTAGCAGACGTCACTAGGAAAAGAGCTCTGTTACTCCATGCCTTATGCATTGGCCTTTCAATTGATGTCGGGCAAGTCATACGTGCATCGATCCGAAGGACTGCTAGAGGGTCGACCATTGGTGGTCTCGAACACCTCTCCTTGTTCACCGAACTATGTAGGAGGGCTAGGGTTGAAATAGGAGCTATAAATGAACCCAGAGAGCTAGAGAGAGAGAGGAGAGTCAGTTGGACCATATTTAGAGGATTGGCACTCATAATGCCACTGAGCTTCGACCTCTCCATAGAGATGTCCGGTATGTCATGGACAAGCAAGATCTCTACTTCGCTCATAAGTTTTGACCCTCACCTTCCTAGGCCACGTTCTCCTGGTTATGATTCTTAG

Protein sequence

FIHVIRLADVTRKRALLLHALCIGLSIDVGQVIRASIRRTARGSTIGGLEHLSLFTELCRRARVEIGAINEPRELERERRVSWTIFRGLALIMPLSFDLSIEMSGMSWTSKISTSLISFDPHLPRPRSPGYDS
Homology
BLAST of ClCG07G008910.1 vs. NCBI nr
Match: TYK21755.1 (uncharacterized protein E5676_scaffold1721G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 7.6e-06
Identity = 36/68 (52.94%), Postives = 43/68 (63.24%), Query Frame = 0

Query: 4  VIRLADVTRKRALLLHALCIGLSIDVGQVIRASIRRTARGSTIGGLEHLSLFTELCRRAR 63
          V + ++VT  RALLL  L  GLSIDV ++I  SI+ T R  T  GL H SL TELCR+A 
Sbjct: 3  VTQFSNVTNDRALLLFVLASGLSIDVRKIIFHSIKLTYRTPTTYGLRHPSLITELCRQAG 62

Query: 64 VEIGAINE 72
          VE G   E
Sbjct: 63 VEFGIDKE 70

BLAST of ClCG07G008910.1 vs. NCBI nr
Match: KAA0047231.1 (uncharacterized protein E6C27_scaffold908G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-05
Identity = 37/68 (54.41%), Postives = 42/68 (61.76%), Query Frame = 0

Query: 4  VIRLADVTRKRALLLHALCIGLSIDVGQVIRASIRRTARGSTIGGLEHLSLFTELCRRAR 63
          V R +DVT  RALLL  L  GLSIDV ++I  SI+ T R  T  GL H SL TEL R+A 
Sbjct: 3  VTRFSDVTNDRALLLFVLASGLSIDVRKIIFHSIKLTYRTPTTYGLRHPSLITELYRQAG 62

Query: 64 VEIGAINE 72
          VE G   E
Sbjct: 63 VEFGIDKE 70

BLAST of ClCG07G008910.1 vs. NCBI nr
Match: PON49249.1 (hypothetical protein PanWU01x14_231240 [Parasponia andersonii])

HSP 1 Score: 58.2 bits (139), Expect = 6.5e-05
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 0

Query: 7   LADVTRKRALLLHALCIGLSIDVGQVIRASIRRTARGSTIGGLEHLSLFTELCR 61
           ++ VT++RA L +A+  GL +DVG+VI++SI   A GSTI GL HLSL  ELCR
Sbjct: 59  ISGVTKERAALNYAILKGLIVDVGKVIQSSILHIAGGSTIAGLGHLSLIYELCR 112

BLAST of ClCG07G008910.1 vs. NCBI nr
Match: PON36696.1 (hypothetical protein PanWU01x14_326310 [Parasponia andersonii])

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-04
Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 0

Query: 10 VTRKRALLLHALCIGLSIDVGQVIRASIRRTARGSTIGGLEHLSLFTELCRRARVEIGAI 69
          VT++R +L +A+  GL++DVG+VI+ SI   ARGST+  L H +L  ELCR+  V     
Sbjct: 18 VTKERVILNYAILTGLTVDVGKVIQNSILHIARGSTVIALGHSTLIYELCRQVDVP---- 77

Query: 70 NEPRELERERRV--SWTI 86
            PRE+    +V  +WTI
Sbjct: 78 THPREVAVYPKVALTWTI 91

BLAST of ClCG07G008910.1 vs. NCBI nr
Match: XP_007160862.1 (hypothetical protein PHAVU_001G023000g [Phaseolus vulgaris] >ESW32856.1 hypothetical protein PHAVU_001G023000g [Phaseolus vulgaris])

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-04
Identity = 28/69 (40.58%), Postives = 43/69 (62.32%), Query Frame = 0

Query: 8   ADVTRKRALLLHALCIGLSIDVGQVIRASIRRTARGSTIGGLEHLSLFTELCRRARVEIG 67
           +D+T +R+ +++A+  GLS+DVG +I   I  TA   + G L H SL TELCRR  V++ 
Sbjct: 197 SDITERRSQMVYAIMAGLSMDVGVIIAQEIHLTANSGSTGQLSHPSLITELCRREGVDVS 256

Query: 68  --AINEPRE 75
                +PR+
Sbjct: 257 EPPFQKPRQ 265

BLAST of ClCG07G008910.1 vs. ExPASy TrEMBL
Match: A0A5D3DE04 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1721G00020 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.7e-06
Identity = 36/68 (52.94%), Postives = 43/68 (63.24%), Query Frame = 0

Query: 4  VIRLADVTRKRALLLHALCIGLSIDVGQVIRASIRRTARGSTIGGLEHLSLFTELCRRAR 63
          V + ++VT  RALLL  L  GLSIDV ++I  SI+ T R  T  GL H SL TELCR+A 
Sbjct: 3  VTQFSNVTNDRALLLFVLASGLSIDVRKIIFHSIKLTYRTPTTYGLRHPSLITELCRQAG 62

Query: 64 VEIGAINE 72
          VE G   E
Sbjct: 63 VEFGIDKE 70

BLAST of ClCG07G008910.1 vs. ExPASy TrEMBL
Match: A0A5A7U0V9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G00220 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 6.3e-06
Identity = 37/68 (54.41%), Postives = 42/68 (61.76%), Query Frame = 0

Query: 4  VIRLADVTRKRALLLHALCIGLSIDVGQVIRASIRRTARGSTIGGLEHLSLFTELCRRAR 63
          V R +DVT  RALLL  L  GLSIDV ++I  SI+ T R  T  GL H SL TEL R+A 
Sbjct: 3  VTRFSDVTNDRALLLFVLASGLSIDVRKIIFHSIKLTYRTPTTYGLRHPSLITELYRQAG 62

Query: 64 VEIGAINE 72
          VE G   E
Sbjct: 63 VEFGIDKE 70

BLAST of ClCG07G008910.1 vs. ExPASy TrEMBL
Match: A0A2P5BKD1 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_231240 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.1e-05
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 0

Query: 7   LADVTRKRALLLHALCIGLSIDVGQVIRASIRRTARGSTIGGLEHLSLFTELCR 61
           ++ VT++RA L +A+  GL +DVG+VI++SI   A GSTI GL HLSL  ELCR
Sbjct: 59  ISGVTKERAALNYAILKGLIVDVGKVIQSSILHIAGGSTIAGLGHLSLIYELCR 112

BLAST of ClCG07G008910.1 vs. ExPASy TrEMBL
Match: A0A2P5AJH3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_326310 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.0e-05
Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 0

Query: 10 VTRKRALLLHALCIGLSIDVGQVIRASIRRTARGSTIGGLEHLSLFTELCRRARVEIGAI 69
          VT++R +L +A+  GL++DVG+VI+ SI   ARGST+  L H +L  ELCR+  V     
Sbjct: 18 VTKERVILNYAILTGLTVDVGKVIQNSILHIARGSTVIALGHSTLIYELCRQVDVP---- 77

Query: 70 NEPRELERERRV--SWTI 86
            PRE+    +V  +WTI
Sbjct: 78 THPREVAVYPKVALTWTI 91

BLAST of ClCG07G008910.1 vs. ExPASy TrEMBL
Match: V7CVC5 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G023000g PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.0e-05
Identity = 28/69 (40.58%), Postives = 43/69 (62.32%), Query Frame = 0

Query: 8   ADVTRKRALLLHALCIGLSIDVGQVIRASIRRTARGSTIGGLEHLSLFTELCRRARVEIG 67
           +D+T +R+ +++A+  GLS+DVG +I   I  TA   + G L H SL TELCRR  V++ 
Sbjct: 197 SDITERRSQMVYAIMAGLSMDVGVIIAQEIHLTANSGSTGQLSHPSLITELCRREGVDVS 256

Query: 68  --AINEPRE 75
                +PR+
Sbjct: 257 EPPFQKPRQ 265

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK21755.17.6e-0652.94uncharacterized protein E5676_scaffold1721G00020 [Cucumis melo var. makuwa][more]
KAA0047231.11.3e-0554.41uncharacterized protein E6C27_scaffold908G00220 [Cucumis melo var. makuwa][more]
PON49249.16.5e-0555.56hypothetical protein PanWU01x14_231240 [Parasponia andersonii][more]
PON36696.11.4e-0443.59hypothetical protein PanWU01x14_326310 [Parasponia andersonii][more]
XP_007160862.11.4e-0440.58hypothetical protein PHAVU_001G023000g [Phaseolus vulgaris] >ESW32856.1 hypothet... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DE043.7e-0652.94Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U0V96.3e-0654.41Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A2P5BKD13.1e-0555.56Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_231240 PE... [more]
A0A2P5AJH37.0e-0543.59Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_326310 PE... [more]
V7CVC57.0e-0540.58Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G023000g PE=4 ... [more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG07G008910ClCG07G008910gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG07G008910.1-exonClCG07G008910.1-exon-CG_Chr07:23544689..23544887exon
ClCG07G008910.1-exonClCG07G008910.1-exon-CG_Chr07:23545020..23545222exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG07G008910.1-cdsClCG07G008910.1-cds-CG_Chr07:23544689..23544887CDS
ClCG07G008910.1-cdsClCG07G008910.1-cds-CG_Chr07:23545020..23545222CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG07G008910.1ClCG07G008910.1-proteinpolypeptide