ClCG05G020190.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G020190.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr05: 32399387 .. 32400179 (-)
Sequence length	455
RNA-Seq Expression	ClCG05G020190.1
Synteny	ClCG05G020190.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTGCGCCACGGCTTAACCAACATGCACGGAAGGTGGTTGTTATAATGTCAGATCCAAAGAGTTGGAGACTGAAGAATGGTGGTAGAGGGGCAAGCCACGGGTCTAGATTAATATCATTGGAGAAGAAAAGACAGCCTTCTTTCCCCAAATTACTGTAGCTGTCGAGGTATATTAACTTGCTTCAGTAATAGGAAGCATCTTCCCAACACTGTGTTTCTTTCGTCACAGCCAGTAGCCCCATCTAATGCCCTATTATCCCCGCTTTCAATGTGATGATAAAGTTGCAATTATCCTTTATTACATAGGGTACTGTTAGCTTGACATTTATGTGGCTGCTTTCAGGTTCAAACATTGCAACTCTGATACATTTCAAGGATGGCAATTGAATTTATTGCAGCTCTCCATATTGGGTGGGTGAGATTGCCTTTGCTCACTCGTAGTGATTGGACAAAAGATTTTTTTTTTTTCTTGGCTGGTCCATGTTCTTTACACTGTTGTAGCACACTTAAAACCCATTAGATTGAAGATTAGTTATGGATTATTACTTATTTCAGCTATTTTCGTTTGTATAGTGCAGGATAGGGTGTCTGCAAAAAGGTGGAGGGGACATACTGTGAAAGTGCATGGTCCTCCTTTCCCCTCATAAATTCGTGGTGGACCAGTACTTTCTCATTTCTTTATGTCTTTCTTTGTTGTTCACTGTGCTAGATGTATAAACTCTCAACATGCTTAATTGGCTGTCTGATAATCAGCTTCACTAACTTTTGAAGTTTGAAGAAGACATATTATCA

mRNA sequence

CTCTGCGCCACGGCTTAACCAACATGCACGGAAGGTGGTTGTTATAATGTCAGATCCAAAGAGTTGGAGACTGAAGAATGGTGGTAGAGGGGCAAGCCACGGGTCTAGATTAATATCATTGGAGAAGAAAAGACAGCCTTCTTTCCCCAAATTACTGTAGCTGTCGAGGTTCAAACATTGCAACTCTGATACATTTCAAGGATGGCAATTGAATTTATTGCAGCTCTCCATATTGGTGCAGGATAGGGTGTCTGCAAAAAGGTGGAGGGGACATACTGTGAAAGTGCATGGTCCTCCTTTCCCCTCATAAATTCGTGGTGGACCAGTACTTTCTCATTTCTTTATGTCTTTCTTTGTTGTTCACTGTGCTAGATGTATAAACTCTCAACATGCTTAATTGGCTGTCTGATAATCAGCTTCACTAACTTTTGAAGTTTGAAGAAGACATATTATCA

Coding sequence (CDS)

ATGTCAGATCCAAAGAGTTGGAGACTGAAGAATGGTGGTAGAGGGGCAAGCCACGGGTCTAGATTAATATCATTGGAGAAGAAAAGACAGCCTTCTTTCCCCAAATTACTGTAG

Protein sequence

MSDPKSWRLKNGGRGASHGSRLISLEKKRQPSFPKLL

Homology

The following BLAST results are available for this feature:

BLAST of ClCG05G020190.1 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG05G020190.1 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG05G020190.1 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG05G020190.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG05G020190	ClCG05G020190	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG05G020190.1-exon	ClCG05G020190.1-exon-CG_Chr05:32399387..32399605	exon
ClCG05G020190.1-exon	ClCG05G020190.1-exon-CG_Chr05:32399768..32399835	exon
ClCG05G020190.1-exon	ClCG05G020190.1-exon-CG_Chr05:32400012..32400179	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG05G020190.1-three_prime_utr	ClCG05G020190.1-three_prime_utr-CG_Chr05:32399387..32399605	three_prime_UTR
ClCG05G020190.1-three_prime_utr	ClCG05G020190.1-three_prime_utr-CG_Chr05:32399768..32399835	three_prime_UTR
ClCG05G020190.1-three_prime_utr	ClCG05G020190.1-three_prime_utr-CG_Chr05:32400012..32400019	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG05G020190.1-cds	ClCG05G020190.1-cds-CG_Chr05:32400020..32400133	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG05G020190.1-five_prime_utr	ClCG05G020190.1-five_prime_utr-CG_Chr05:32400134..32400179	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG05G020190.1	ClCG05G020190.1-protein	polypeptide