ClCG05G017760.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G017760.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Ty3-gypsy retrotransposon protein
Location	CG_Chr05: 30140972 .. 30141205 (-)
Sequence length	234
RNA-Seq Expression	ClCG05G017760.1
Synteny	ClCG05G017760.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGGTTTCAAAATTCGGCTACCTGTTGTTAAATCGACACTAATGAATCCTCGAGGAGAAGGGCGGCAGCTAGATACTAATACAATGCAGACGATCACTTTGTGTGGGGTGTCGACATTGGGAAATCGCCGAGAGGGACCAGCCAAGAGACGGTCAGATGCTAAATTTCAGGCCAAGCGAGGTAGAGGTCTATGCTTCAAATGTGAGGAGCAATATGTTGTTGGCCATTGA

mRNA sequence

ATGTCGGGTTTCAAAATTCGGCTACCTGTTGTTAAATCGACACTAATGAATCCTCGAGGAGAAGGGCGGCAGCTAGATACTAATACAATGCAGACGATCACTTTGTGTGGGGTGTCGACATTGGGAAATCGCCGAGAGGGACCAGCCAAGAGACGGTCAGATGCTAAATTTCAGGCCAAGCGAGGTAGAGGTCTATGCTTCAAATGTGAGGAGCAATATGTTGTTGGCCATTGA

Coding sequence (CDS)

ATGTCGGGTTTCAAAATTCGGCTACCTGTTGTTAAATCGACACTAATGAATCCTCGAGGAGAAGGGCGGCAGCTAGATACTAATACAATGCAGACGATCACTTTGTGTGGGGTGTCGACATTGGGAAATCGCCGAGAGGGACCAGCCAAGAGACGGTCAGATGCTAAATTTCAGGCCAAGCGAGGTAGAGGTCTATGCTTCAAATGTGAGGAGCAATATGTTGTTGGCCATTGA

Protein sequence

MSGFKIRLPVVKSTLMNPRGEGRQLDTNTMQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFKCEEQYVVGH

Homology

[Close]

BLAST of ClCG05G017760.1 vs. NCBI nr
Match: KAA0044655.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 3.0e-10
Identity = 38/76 (50.00%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 2   SGFKIRLPVVKSTLMNPRGEGRQLDTNTMQTITLCGVSTLGNRREGPAKRRSDAKFQAKR 61
           S F+  LP  K              +  M+TITL  V+   NRREGP+KR SDAKFQA+R
Sbjct: 47  SKFQYNLPKAKENSETKSVTATTGGSTPMRTITLSEVTEANNRREGPSKRPSDAKFQARR 106

Query: 62  GRGLCFKCEEQYVVGH 78
            +GLCFKCEE+Y  GH
Sbjct: 107 EKGLCFKCEEKYYAGH 122

[Close]

BLAST of ClCG05G017760.1 vs. NCBI nr
Match: KAA0057854.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ98538.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 8.6e-10
Identity = 32/48 (66.67%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 30  MQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFKCEEQYVVGH 78
           M+T+TL GV+   NRREGP+KR +DA+FQA+R +GLCFKCEE+Y VGH
Sbjct: 222 MRTVTLRGVTAADNRREGPSKRLTDAEFQARREKGLCFKCEEKYYVGH 269

[Close]

BLAST of ClCG05G017760.1 vs. NCBI nr
Match: TYK04845.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 2.5e-09
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 9   PVVKSTLMNPRGEGRQLDTNTMQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFK 68
           P+ KS ++    E +  ++  M+TITL GV+   NRRE P KR SDA+FQA+  +GLCF+
Sbjct: 107 PIQKSVILITMNENKPGNSYPMRTITLRGVTAGENRRERPGKRLSDAEFQAREDKGLCFR 166

Query: 69  CEEQYVVGH 78
           C+E+Y VGH
Sbjct: 167 CDEKYHVGH 175

[Close]

BLAST of ClCG05G017760.1 vs. NCBI nr
Match: KAA0062185.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 4.3e-09
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 9   PVVKSTLMNPRGEGRQLDTNTMQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFK 68
           P+ KS ++    E +  ++  M+TITL GV+   NRRE P KR SDA+FQA+  +GLCF+
Sbjct: 150 PIQKSVILITMNENKPGNSYPMRTITLRGVTAGENRRERPGKRLSDAEFQARGDKGLCFR 209

Query: 69  CEEQYVVGH 78
           C+E+Y VGH
Sbjct: 210 CDEKYHVGH 218

[Close]

BLAST of ClCG05G017760.1 vs. NCBI nr
Match: KAA0050511.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 5.6e-09
Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 12  KSTLMNPRGEGRQLDTNTMQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFKCEE 71
           K+T+     EG    +  M+TITL  V+T  NRREGP KR SDA+FQA+R +GLCF+C E
Sbjct: 385 KNTIATTTKEGTTSGSWPMRTITLREVATGDNRREGPTKRLSDAEFQARREKGLCFRCGE 444

Query: 72  QYVVGH 78
           +Y  GH
Sbjct: 445 KYFAGH 450

[Close]

BLAST of ClCG05G017760.1 vs. ExPASy TrEMBL
Match: A0A5A7TTE3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004110 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.4e-10
Identity = 38/76 (50.00%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 2   SGFKIRLPVVKSTLMNPRGEGRQLDTNTMQTITLCGVSTLGNRREGPAKRRSDAKFQAKR 61
           S F+  LP  K              +  M+TITL  V+   NRREGP+KR SDAKFQA+R
Sbjct: 47  SKFQYNLPKAKENSETKSVTATTGGSTPMRTITLSEVTEANNRREGPSKRPSDAKFQARR 106

Query: 62  GRGLCFKCEEQYVVGH 78
            +GLCFKCEE+Y  GH
Sbjct: 107 EKGLCFKCEEKYYAGH 122

[Close]

BLAST of ClCG05G017760.1 vs. ExPASy TrEMBL
Match: A0A5A7URT5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G001450 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.2e-10
Identity = 32/48 (66.67%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 30  MQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFKCEEQYVVGH 78
           M+T+TL GV+   NRREGP+KR +DA+FQA+R +GLCFKCEE+Y VGH
Sbjct: 222 MRTVTLRGVTAADNRREGPSKRLTDAEFQARREKGLCFKCEEKYYVGH 269

[Close]

BLAST of ClCG05G017760.1 vs. ExPASy TrEMBL
Match: A0A5D3C0H5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G00240 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 9   PVVKSTLMNPRGEGRQLDTNTMQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFK 68
           P+ KS ++    E +  ++  M+TITL GV+   NRRE P KR SDA+FQA+  +GLCF+
Sbjct: 107 PIQKSVILITMNENKPGNSYPMRTITLRGVTAGENRRERPGKRLSDAEFQAREDKGLCFR 166

Query: 69  CEEQYVVGH 78
           C+E+Y VGH
Sbjct: 167 CDEKYHVGH 175

[Close]

BLAST of ClCG05G017760.1 vs. ExPASy TrEMBL
Match: A0A5A7V8F0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G005770 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.1e-09
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 9   PVVKSTLMNPRGEGRQLDTNTMQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFK 68
           P+ KS ++    E +  ++  M+TITL GV+   NRRE P KR SDA+FQA+  +GLCF+
Sbjct: 150 PIQKSVILITMNENKPGNSYPMRTITLRGVTAGENRRERPGKRLSDAEFQARGDKGLCFR 209

Query: 69  CEEQYVVGH 78
           C+E+Y VGH
Sbjct: 210 CDEKYHVGH 218

[Close]

BLAST of ClCG05G017760.1 vs. ExPASy TrEMBL
Match: A0A5D3CU05 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00630 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.7e-09
Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 12  KSTLMNPRGEGRQLDTNTMQTITLCGVSTLGNRREGPAKRRSDAKFQAKRGRGLCFKCEE 71
           K+T+     EG    +  M+TITL  V+T  NRREGP KR SDA+FQA+R +GLCF+C E
Sbjct: 383 KNTIATATKEGTTSGSWPMRTITLREVATGDNRREGPTKRLSDAEFQARREKGLCFRCGE 442

Query: 72  QYVVGH 78
           +Y  GH
Sbjct: 443 KYFAGH 448

The following BLAST results are available for this feature:

BLAST of ClCG05G017760.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044655.1	3.0e-10	50.00	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0057854.1	8.6e-10	66.67	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ98538.1 ty3-gyp...	[more]
TYK04845.1	2.5e-09	49.28	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0062185.1	4.3e-09	49.28	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0050511.1	5.6e-09	53.03	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of ClCG05G017760.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG05G017760.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TTE3	1.4e-10	50.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46...	[more]
A0A5A7URT5	4.2e-10	66.67	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3C0H5	1.2e-09	49.28	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V8F0	2.1e-09	49.28	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CU05	2.7e-09	53.03	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of ClCG05G017760.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG05G017760	ClCG05G017760	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG05G017760.1-exon	ClCG05G017760.1-exon-CG_Chr05:30140972..30141205	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG05G017760.1-cds	ClCG05G017760.1-cds-CG_Chr05:30140972..30141205	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG05G017760.1	ClCG05G017760.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008299	isoprenoid biosynthetic process
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004496	mevalonate kinase activity