ClCG04G009390.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G009390.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	zinc finger protein 593
Location	CG_Chr04: 24216696 .. 24218679 (-)
Sequence length	787
RNA-Seq Expression	ClCG04G009390.1
Synteny	ClCG04G009390.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGCCTATACGATATTGCCGCTTACATCTCATTCCCTCTTCTCTCTTTCCCTTGCTAGGGCTCTGGTGGAACAGCCACCGATAAAACCCTAATTTTTTCTTCCGGTGCTGCCATACTTGAAATCCCCCATACATAGAAGCAAATGGGAGGTAAGTGCCCTCACAGAAGCGTAAAGAAGCGGAGATACTCGCACAAGACCGCTCGGCGCACGAAATTTCTTGTCAAAGATATCCTTTGTCTAACCCTCCAGTTCATTGGTTTTTTTTCTCTCTTCTAATTCTTCTTCTGTTTCCTTTTGCGTTTGTGGATTTTCCTTAATTTGATGAATTGGTTAATTACGCGATGATATGGTTTACGATGAGTTGACGAAATTCGAGGTGGAGAAGCCTTCTCTTCCTGTCGATGAAGATTTGCCTGGAATGGGGCAGTACTACTGCTTGCACTGCGAGTATGTTCTTTCCTTTGGTATTCTTTTTTATGACTTCACTCGAAATTCCTATATAAAATTGTTTTACTCATGTGTCAGTCGAAATTAGTCGTAGAGTTTAAATAAATCATGAATTTTCATGGTTAGGGCTGAATATCTTTTGTTGTGTTATCTGAGGTCTGAGATGTTTTGTGAAATAGTATGGTTTTGATTTTTATCATGAATCAAATTATTAAGTACAAATTTGAAGTTTACAATTTACAATTGACTAATGGTATGGTTTCAGTCGATACTTTGCGAATGTGTCTGTGAGGGATGAACATTTCAAGACCAAGCGTCACAGGAAGCGGTGAGTTTGTGCATCCTTATCAGCCTTTGTGCATTTACAGTTGATATATATATAGCCAATTTGATCTCGTCTTCTCATTGGAAACATGATTAAATGTTGAATACGTTCAGTTTTAACCTCATCAGCCTTTGTTTCTTTTATTTACGTCTTTAATTTTGCCTAATTTAGTTGGTGCTTTTTGGATTTGCACGAGTCTCACCTAATGAATTGAACTCTATCTAGATTGTTTTGTGTGAAATTCTTGGAACTGGAGTTTGTCTTAATGCTGACTGAGATTAAAGAAGAATATTTACGTTTTTAATTTGTCTACTTTAGTTGGGGCTTTGTGGATCTGTATGAATTTCACGTGATGAATTGAACTCTCTCTAGATTGTTGTGTGTGAAATTTTAAACTTGGAAATGCAATATTATAAAATGGACTTTATCTTAATGCTGAATGAGGGTAAATTTCTAAAGTTTCTTCACTTGATCTTGTCTTAATTTGTTATAAATATGGCATATGTGAAAATGAATTTGAAACTCCTGTGGAATTTGAATTGTTGTTACTCTAATTACATCCATTTGTAGCCATTGCCCTTGGATTCTCTATAATATTTGATTTCATTTGATTGGAAGATATGAAGTTGGTACGATTGTATTAAAAAAGAATATTTGAATTGCAACTGTTAACAATGTTCCTGATCCATGGTCCTTAGGTTCTCTATAATATTTGATTTAATTTGATTGTGAGATATGAAGTTAGTATGATTGTATTAAAGAAGAATATTTGAATTGCAACTGTTAACAATGTTCCTGATCCACAACGATGACAATGTTGCAGGGTAAAACTAATGACGGGTCCTGCACCTCACACGCAACTGGATGCCGAGCTAGCTGCTGGGATGGGCATGCCTGATAACGGTCCAAAGCTTATGGCAATGTGAGCTTATTACTTATCATACAACTTAAGCATTTTTGGTGTTGTAAAGAGCTTAGAGTGAGGTTAGTTTCTCGTTTAACTAACAAGATCGATTTTGTCATATACTATTACTGGTTGTGTATTTTATTTGCAGAGTTATTTTTATCACTTAATTTTAGCTTCATATTTTACACCAACTTATAATTTGGTTGAGGCATATTCCTCCAATCAAGAAGTCAAATGTTCACATTTAGTGTTGAATTCAAAAAGACAATTGACTGTTATTATACAAGTATGTCTACATATTTG

mRNA sequence

GAAGCCTATACGATATTGCCGCTTACATCTCATTCCCTCTTCTCTCTTTCCCTTGCTAGGGCTCTGGTGGAACAGCCACCGATAAAACCCTAATTTTTTCTTCCGGTGCTGCCATACTTGAAATCCCCCATACATAGAAGCAAATGGGAGGTAAGTGCCCTCACAGAAGCGTAAAGAAGCGGAGATACTCGCACAAGACCGCTCGGCGCACGAAATTTCTTGTCAAAGGCGATGATATGGTTTACGATGAGTTGACGAAATTCGAGGTGGAGAAGCCTTCTCTTCCTGTCGATGAAGATTTGCCTGGAATGGGGCAGTACTACTGCTTGCACTGCGATCGATACTTTGCGAATGTGTCTGTGAGGGATGAACATTTCAAGACCAAGCGTCACAGGAAGCGGGTAAAACTAATGACGGGTCCTGCACCTCACACGCAACTGGATGCCGAGCTAGCTGCTGGGATGGGCATGCCTGATAACGGTCCAAAGCTTATGGCAATGTGAGCTTATTACTTATCATACAACTTAAGCATTTTTGGTGTTGTAAAGAGCTTAGAGTGAGGTTAGTTTCTCGTTTAACTAACAAGATCGATTTTGTCATATACTATTACTGGTTGTGTATTTTATTTGCAGAGTTATTTTTATCACTTAATTTTAGCTTCATATTTTACACCAACTTATAATTTGGTTGAGGCATATTCCTCCAATCAAGAAGTCAAATGTTCACATTTAGTGTTGAATTCAAAAAGACAATTGACTGTTATTATACAAGTATGTCTACATATTTG

Coding sequence (CDS)

ATGGGAGGTAAGTGCCCTCACAGAAGCGTAAAGAAGCGGAGATACTCGCACAAGACCGCTCGGCGCACGAAATTTCTTGTCAAAGGCGATGATATGGTTTACGATGAGTTGACGAAATTCGAGGTGGAGAAGCCTTCTCTTCCTGTCGATGAAGATTTGCCTGGAATGGGGCAGTACTACTGCTTGCACTGCGATCGATACTTTGCGAATGTGTCTGTGAGGGATGAACATTTCAAGACCAAGCGTCACAGGAAGCGGGTAAAACTAATGACGGGTCCTGCACCTCACACGCAACTGGATGCCGAGCTAGCTGCTGGGATGGGCATGCCTGATAACGGTCCAAAGCTTATGGCAATGTGA

Protein sequence

MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKFEVEKPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM

Homology

[Close]

BLAST of ClCG04G009390.1 vs. NCBI nr
Match: XP_008462489.1 (PREDICTED: zinc finger protein 593 [Cucumis melo])

HSP 1 Score: 241.9 bits (616), Expect = 2.8e-60
Identity = 114/119 (95.80%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKFEVEKPSLPVDEDLPGMGQYY 60
           MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVY+EL K EVE+PSLPVDEDLPGMGQYY
Sbjct: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYNELAKPEVERPSLPVDEDLPGMGQYY 60

Query: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM 120
           CLHCDRYFANVSVRDEHFKTKRHRKRVKLM+GPAPHTQLDAELAAGMGMPDNGPKLMAM
Sbjct: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMSGPAPHTQLDAELAAGMGMPDNGPKLMAM 119

[Close]

BLAST of ClCG04G009390.1 vs. NCBI nr
Match: XP_022143723.1 (zinc finger protein 593 [Momordica charantia])

HSP 1 Score: 241.5 bits (615), Expect = 3.7e-60
Identity = 113/119 (94.96%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKFEVEKPSLPVDEDLPGMGQYY 60
           MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDEL K +VE+PSLPVDEDLPGMGQYY
Sbjct: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELKKPDVERPSLPVDEDLPGMGQYY 60

Query: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM 120
           CLHCDRYFANVSVRDEHFKTKRHRKR+KLMTGPAPHTQLDAELAAGMGMPDNGPKLM+M
Sbjct: 61  CLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHTQLDAELAAGMGMPDNGPKLMSM 119

[Close]

BLAST of ClCG04G009390.1 vs. NCBI nr
Match: XP_038882974.1 (zinc finger protein 593 [Benincasa hispida])

HSP 1 Score: 240.4 bits (612), Expect = 8.2e-60
Identity = 114/119 (95.80%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKFEVEKPSLPVDEDLPGMGQYY 60
           MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDEL K EVEK SLPVDEDLPGMGQYY
Sbjct: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELAKPEVEKTSLPVDEDLPGMGQYY 60

Query: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM 120
           CLHCDRYFANVSVRDEHFKTKRHRKR+KLM GPAPHTQLDAELAAGMGMPDNGPKLMAM
Sbjct: 61  CLHCDRYFANVSVRDEHFKTKRHRKRLKLMAGPAPHTQLDAELAAGMGMPDNGPKLMAM 119

[Close]

BLAST of ClCG04G009390.1 vs. NCBI nr
Match: XP_004143276.1 (zinc finger protein 593 [Cucumis sativus] >KGN48194.1 hypothetical protein Csa_004178 [Cucumis sativus])

HSP 1 Score: 238.8 bits (608), Expect = 2.4e-59
Identity = 113/119 (94.96%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKFEVEKPSLPVDEDLPGMGQYY 60
           MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVY+EL K EVE+PSLPVDEDLPGMGQYY
Sbjct: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYNELAKPEVERPSLPVDEDLPGMGQYY 60

Query: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM 120
           CLHCDRYFANVSVRDEHFKTKRHRKRVK M GPAPHTQLDAELAAGMGMPDNGPKLMAM
Sbjct: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKQMLGPAPHTQLDAELAAGMGMPDNGPKLMAM 119

[Close]

BLAST of ClCG04G009390.1 vs. NCBI nr
Match: XP_022962632.1 (zinc finger protein 593 [Cucurbita moschata] >XP_023517301.1 zinc finger protein 593 [Cucurbita pepo subsp. pepo] >KAG7027247.1 Zinc finger protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236.9 bits (603), Expect = 9.1e-59
Identity = 111/119 (93.28%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKFEVEKPSLPVDEDLPGMGQYY 60
           MGGKCPHRSVKKRRYSHKTARRTKFL+ GDDMVYD L K EVE+PSLPVDEDLPGMGQYY
Sbjct: 1   MGGKCPHRSVKKRRYSHKTARRTKFLINGDDMVYDALKKPEVERPSLPVDEDLPGMGQYY 60

Query: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM 120
           CLHCDRYFANVSVRDEHFKTKRHRKRVKLM GPAPHTQLDA+LAAGMGMPDNGPKLMAM
Sbjct: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMPDNGPKLMAM 119

[Close]

BLAST of ClCG04G009390.1 vs. ExPASy Swiss-Prot
Match: B0BLT0 (Zinc finger protein 593 OS=Xenopus tropicalis OX=8364 GN=znf593 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.5e-13
Identity = 48/106 (45.28%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 7   HRSVKKRRYSH--KTARRTKFLVKGDDMVYDELTKFEVEKPSL--PVDEDLPGMGQYYCL 66
           H+S KK+  S   KT RR K L    D ++ ++ K E  K  L   +D  LPG  Q+YCL
Sbjct: 10  HKSDKKKNISKLWKTKRRVKDL----DQIHHDM-KPENAKLLLNQEIDYQLPGNAQHYCL 69

Query: 67  HCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMG 109
           HC RYF ++    EHFKTK H++R+K +    P+TQ +AE AAGMG
Sbjct: 70  HCSRYFVDLKTLKEHFKTKVHKRRLKQLR-EEPYTQEEAERAAGMG 109

[Close]

BLAST of ClCG04G009390.1 vs. ExPASy Swiss-Prot
Match: Q08004 (Bud site selection protein 20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=BUD20 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-11
Identity = 42/101 (41.58%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 14  RYS---HKTARRTKFLVKGDDMVYDEL-TKFEVEK-PSLPVDEDLPGMGQYYCLHCDRYF 73
           RYS   +KT RRT+ L    D++Y++L TK  V+K  + P+DE  PG+GQ+YC+HC +Y 
Sbjct: 3   RYSVKRYKTKRRTRDL----DLIYNDLSTKESVQKLLNQPLDETKPGLGQHYCIHCAKYM 62

Query: 74  ANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGM 110
                   H K K H++RVK + G  P+TQ  ++ AAG  +
Sbjct: 63  ETAIALKTHLKGKVHKRRVKELRG-VPYTQEVSDAAAGYNL 98

[Close]

BLAST of ClCG04G009390.1 vs. ExPASy Swiss-Prot
Match: Q553S1 (Zinc finger protein 593 homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0275351 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-11
Identity = 41/117 (35.04%), Postives = 60/117 (51.28%), Query Frame = 0


Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKFEVEKPS-LPVDEDLPGMGQY 60
           MG    H     ++  +K AR TK   K  D ++DE+    ++K S   VD DLPGMGQ 
Sbjct: 1   MGRYSGHGGTHTKKKQYKRARSTKNRAKDIDQIFDEIQPETIDKFSKFEVDPDLPGMGQN 60

Query: 61  YCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKL 117
           YC+HC ++F        H K K H+ RVK +    P++  ++++       DNG KL
Sbjct: 61  YCIHCSKHFVTNEDLQSHIKGKPHKIRVKELK-TKPYSLAESQIPV-----DNGVKL 111

[Close]

BLAST of ClCG04G009390.1 vs. ExPASy Swiss-Prot
Match: Q9P370 (Zinc finger protein bud20 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=bud20 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.3e-11
Identity = 38/105 (36.19%), Postives = 60/105 (57.14%), Query Frame = 0


Query: 10  VKKRRYSHKTAR----RTKFLVKGDDMVYDELTKFEVEKPSLPVDEDLPGMGQYYCLHCD 69
           V ++R  H        RT+   +  D ++++LT+ E +   LP+D DLPG+GQ+YC+ C 
Sbjct: 4   VARKRKHHSNGNHALFRTRVYGRDLDQIHNDLTESE-KFDKLPIDPDLPGLGQHYCIECA 63

Query: 70  RYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMP 111
           RYF +      H K K H++R+K +    P+TQ +AE A  +G P
Sbjct: 64  RYFDSSQALLVHKKGKVHKRRLKNLR-EEPYTQEEAEAAVNIGQP 106

[Close]

BLAST of ClCG04G009390.1 vs. ExPASy Swiss-Prot
Match: Q9U239 (Zinc finger protein 593 homolog OS=Caenorhabditis elegans OX=6239 GN=Y56A3A.18 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.8e-10
Identity = 38/104 (36.54%), Postives = 56/104 (53.85%), Query Frame = 0


Query: 6   PHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKFEVEK-PSLPVDEDLPGMGQYYCLHC 65
           P    +K   S+KT +R     K  D ++++L   +  K     +D DLPG GQ+YC+ C
Sbjct: 2   PSGGQRKHTISNKTRKRPG---KDLDQIHEDLKPEKAAKLLQQEIDYDLPGNGQFYCIEC 61

Query: 66  DRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMG 109
           +R+F +   R  H KTK H+ RVK +    P+TQ +A  A G G
Sbjct: 62  ERHFVDEKTRQLHRKTKLHKNRVKTLK-EVPYTQAEANAAGGSG 101

[Close]

BLAST of ClCG04G009390.1 vs. ExPASy TrEMBL
Match: A0A1S3CH13 (zinc finger protein 593 OS=Cucumis melo OX=3656 GN=LOC103500829 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.4e-60
Identity = 114/119 (95.80%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKFEVEKPSLPVDEDLPGMGQYY 60
           MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVY+EL K EVE+PSLPVDEDLPGMGQYY
Sbjct: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYNELAKPEVERPSLPVDEDLPGMGQYY 60

Query: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM 120
           CLHCDRYFANVSVRDEHFKTKRHRKRVKLM+GPAPHTQLDAELAAGMGMPDNGPKLMAM
Sbjct: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMSGPAPHTQLDAELAAGMGMPDNGPKLMAM 119

[Close]

BLAST of ClCG04G009390.1 vs. ExPASy TrEMBL
Match: A0A6J1CRE9 (zinc finger protein 593 OS=Momordica charantia OX=3673 GN=LOC111013565 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 1.8e-60
Identity = 113/119 (94.96%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKFEVEKPSLPVDEDLPGMGQYY 60
           MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDEL K +VE+PSLPVDEDLPGMGQYY
Sbjct: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELKKPDVERPSLPVDEDLPGMGQYY 60

Query: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM 120
           CLHCDRYFANVSVRDEHFKTKRHRKR+KLMTGPAPHTQLDAELAAGMGMPDNGPKLM+M
Sbjct: 61  CLHCDRYFANVSVRDEHFKTKRHRKRMKLMTGPAPHTQLDAELAAGMGMPDNGPKLMSM 119

[Close]

BLAST of ClCG04G009390.1 vs. ExPASy TrEMBL
Match: A0A0A0KHA1 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G446540 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.2e-59
Identity = 113/119 (94.96%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKFEVEKPSLPVDEDLPGMGQYY 60
           MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVY+EL K EVE+PSLPVDEDLPGMGQYY
Sbjct: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYNELAKPEVERPSLPVDEDLPGMGQYY 60

Query: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM 120
           CLHCDRYFANVSVRDEHFKTKRHRKRVK M GPAPHTQLDAELAAGMGMPDNGPKLMAM
Sbjct: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKQMLGPAPHTQLDAELAAGMGMPDNGPKLMAM 119

[Close]

BLAST of ClCG04G009390.1 vs. ExPASy TrEMBL
Match: A0A6J1HD68 (zinc finger protein 593 OS=Cucurbita moschata OX=3662 GN=LOC111463050 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.4e-59
Identity = 111/119 (93.28%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKFEVEKPSLPVDEDLPGMGQYY 60
           MGGKCPHRSVKKRRYSHKTARRTKFL+ GDDMVYD L K EVE+PSLPVDEDLPGMGQYY
Sbjct: 1   MGGKCPHRSVKKRRYSHKTARRTKFLINGDDMVYDALKKPEVERPSLPVDEDLPGMGQYY 60

Query: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM 120
           CLHCDRYFANVSVRDEHFKTKRHRKRVKLM GPAPHTQLDA+LAAGMGMPDNGPKLMAM
Sbjct: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMPDNGPKLMAM 119

[Close]

BLAST of ClCG04G009390.1 vs. ExPASy TrEMBL
Match: A0A6J1I5Q7 (zinc finger protein 593 OS=Cucurbita maxima OX=3661 GN=LOC111471272 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.3e-58
Identity = 110/119 (92.44%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKFEVEKPSLPVDEDLPGMGQYY 60
           MGGKCPHRSVKKRRYSHK+ARRTKFL+ GDDMVYD L K EVE+PSLPVDEDLPGMGQYY
Sbjct: 1   MGGKCPHRSVKKRRYSHKSARRTKFLINGDDMVYDALKKPEVERPSLPVDEDLPGMGQYY 60

Query: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM 120
           CLHCDRYFANVSVRDEHFKTKRHRKRVKLM GPAPHTQLDA+LAAGMGMPDNGPKLMAM
Sbjct: 61  CLHCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMPDNGPKLMAM 119

[Close]

BLAST of ClCG04G009390.1 vs. TAIR 10
Match: AT2G36930.1 (zinc finger (C2H2 type) family protein )

HSP 1 Score: 188.0 bits (476), Expect = 4.5e-48
Identity = 87/116 (75.00%), Postives = 99/116 (85.34%), Query Frame = 0


Query: 3   GKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKFEVEKPSLPVDEDLPGMGQYYCL 62
           G+CP R VKKRR SHKTARR KF VKGDD+VY EL K E E   L +DEDLPGMGQ+YCL
Sbjct: 2   GRCPTRKVKKRRLSHKTARRDKFEVKGDDLVYTELRKPETEIKPLQLDEDLPGMGQFYCL 61

Query: 63  HCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMA 119
           HCDRYF+NVSVRD+HFKTK+H+KRV +M G APH+QLDA+LA GMGMPDNGPKLM+
Sbjct: 62  HCDRYFSNVSVRDDHFKTKKHKKRVNMMMGQAPHSQLDADLAGGMGMPDNGPKLMS 117

The following BLAST results are available for this feature:

BLAST of ClCG04G009390.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462489.1	2.8e-60	95.80	PREDICTED: zinc finger protein 593 [Cucumis melo]	[more]
XP_022143723.1	3.7e-60	94.96	zinc finger protein 593 [Momordica charantia]	[more]
XP_038882974.1	8.2e-60	95.80	zinc finger protein 593 [Benincasa hispida]	[more]
XP_004143276.1	2.4e-59	94.96	zinc finger protein 593 [Cucumis sativus] >KGN48194.1 hypothetical protein Csa_0...	[more]
XP_022962632.1	9.1e-59	93.28	zinc finger protein 593 [Cucurbita moschata] >XP_023517301.1 zinc finger protein...	[more]

BLAST of ClCG04G009390.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B0BLT0	3.5e-13	45.28	Zinc finger protein 593 OS=Xenopus tropicalis OX=8364 GN=znf593 PE=2 SV=1	[more]
Q08004	1.5e-11	41.58	Bud site selection protein 20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / ...	[more]
Q553S1	2.5e-11	35.04	Zinc finger protein 593 homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G027...	[more]
Q9P370	7.3e-11	36.19	Zinc finger protein bud20 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)...	[more]
Q9U239	2.8e-10	36.54	Zinc finger protein 593 homolog OS=Caenorhabditis elegans OX=6239 GN=Y56A3A.18 P...	[more]

BLAST of ClCG04G009390.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CH13	1.4e-60	95.80	zinc finger protein 593 OS=Cucumis melo OX=3656 GN=LOC103500829 PE=4 SV=1	[more]
A0A6J1CRE9	1.8e-60	94.96	zinc finger protein 593 OS=Momordica charantia OX=3673 GN=LOC111013565 PE=4 SV=1	[more]
A0A0A0KHA1	1.2e-59	94.96	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G446540 P...	[more]
A0A6J1HD68	4.4e-59	93.28	zinc finger protein 593 OS=Cucurbita moschata OX=3662 GN=LOC111463050 PE=4 SV=1	[more]
A0A6J1I5Q7	1.3e-58	92.44	zinc finger protein 593 OS=Cucurbita maxima OX=3661 GN=LOC111471272 PE=4 SV=1	[more]

BLAST of ClCG04G009390.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36930.1	4.5e-48	75.00	zinc finger (C2H2 type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003604	Matrin/U1-C-like, C2H2-type zinc finger	SMART	SM00451	ZnF_U1_5	coord: 56..90 e-value: 5.4E-10 score: 49.2
IPR022755	Zinc finger, double-stranded RNA binding	PFAM	PF12171	zf-C2H2_jaz	coord: 58..84 e-value: 2.7E-9 score: 37.0
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 44..109 e-value: 2.3E-23 score: 83.9
None	No IPR available	PANTHER	PTHR47444	EXPRESSED PROTEIN	coord: 1..119
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 61..83
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 47..110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG04G009390	ClCG04G009390	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG04G009390.1-exon	ClCG04G009390.1-exon-CG_Chr04:24216696..24217082	exon
ClCG04G009390.1-exon	ClCG04G009390.1-exon-CG_Chr04:24217903..24217965	exon
ClCG04G009390.1-exon	ClCG04G009390.1-exon-CG_Chr04:24218231..24218339	exon
ClCG04G009390.1-exon	ClCG04G009390.1-exon-CG_Chr04:24218452..24218679	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG04G009390.1-three_prime_utr	ClCG04G009390.1-three_prime_utr-CG_Chr04:24216696..24216979	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG04G009390.1-cds	ClCG04G009390.1-cds-CG_Chr04:24216980..24217082	CDS
ClCG04G009390.1-cds	ClCG04G009390.1-cds-CG_Chr04:24217903..24217965	CDS
ClCG04G009390.1-cds	ClCG04G009390.1-cds-CG_Chr04:24218231..24218339	CDS
ClCG04G009390.1-cds	ClCG04G009390.1-cds-CG_Chr04:24218452..24218536	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG04G009390.1-five_prime_utr	ClCG04G009390.1-five_prime_utr-CG_Chr04:24218537..24218679	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG04G009390.1	ClCG04G009390.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding