ClCG04G007830.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G007830.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr04: 22805533 .. 22806020 (-)
Sequence length	198
RNA-Seq Expression	ClCG04G007830.1
Synteny	ClCG04G007830.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTGGTTGGTGGGAGAGAGAGGCAAATACAATACAATTATTGCTTACGTTTTTTTTAGGTTATTATCAATTCCAAATTAGCATACAATAAAGTGAACAGGATGGAAAGGTAAAATTCTCCATTTATGAAAACGATGAACAATGAAACGCCATTGGAAAAAGAACTAAGCACCAGGAGAACCGAAAATAAACTCAGCAATAGCACCTGCCGCTAAATTTTGAACCAGAGCAAACACTCCACTCCCGAACGTTGATCCCCAAATCGCCGGAGGCCGTGGATTTCCACCATAATTAGCTCCGGGAGGATAACCAATATGATGATTCGGAAATCCCCAAGGAGCCGGAACTCCACCGTAAGAAAAATGGCCACCACCATAACCATTCGGATTCACATAGTAACCATTCGGTTGATGCGCCGCCGTCCACGGCTGCGCGTGCGCGGATGATACCCAGCGAGATTTCGTCGGCGAACCGTACGGCTTGA

mRNA sequence

ATGGCAGTGCTCCGGGAGGATAACCAATATGATGATTCGGAAATCCCCAAGGAGCCGGAACTCCACCGTAAGAAAAATGGCCACCACCATAACCATTCGGATTCACATAGTAACCATTCGGTTGATGCGCCGCCGTCCACGGCTGCGCGTGCGCGGATGATACCCAGCGAGATTTCGTCGGCGAACCGTACGGCTTGA

Coding sequence (CDS)

ATGGCAGTGCTCCGGGAGGATAACCAATATGATGATTCGGAAATCCCCAAGGAGCCGGAACTCCACCGTAAGAAAAATGGCCACCACCATAACCATTCGGATTCACATAGTAACCATTCGGTTGATGCGCCGCCGTCCACGGCTGCGCGTGCGCGGATGATACCCAGCGAGATTTCGTCGGCGAACCGTACGGCTTGA

Protein sequence

MAVLREDNQYDDSEIPKEPELHRKKNGHHHNHSDSHSNHSVDAPPSTAARARMIPSEISSANRTA

Homology

The following BLAST results are available for this feature:

BLAST of ClCG04G007830.1 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG04G007830.1 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG04G007830.1 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG04G007830.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG04G007830	ClCG04G007830	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG04G007830.1-exon	ClCG04G007830.1-exon-CG_Chr04:22805533..22805721	exon
ClCG04G007830.1-exon	ClCG04G007830.1-exon-CG_Chr04:22806012..22806020	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG04G007830.1-cds	ClCG04G007830.1-cds-CG_Chr04:22805533..22805721	CDS
ClCG04G007830.1-cds	ClCG04G007830.1-cds-CG_Chr04:22806012..22806020	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG04G007830.1	ClCG04G007830.1-protein	polypeptide