ClCG03G012890.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G012890.1
TypemRNA
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr03: 26665672 .. 26669018 (-)
Sequence length756
RNA-Seq ExpressionClCG03G012890.1
SyntenyClCG03G012890.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAATATGGGAGTGCTTGGGAGTAGATGAATGGAGAAATCTTCATGAAAATGTCTTCGAAATAAGTGATGTAAGTATTTCTTACAAATTCTTATTTTCATTTCTCTTATTTTCACTTGTAACAACCAAAAAAACCTTCATAAATTAAACAAATTGATAAACAAGTGATAGTAGTCTATCACTATCTATCACTTGTATATCAATTGTTTGATAGATAGAGATAGAAGTCTATATTGTCTATCACGATAGAATATTATTGTTGTCTATCACATATAGACAACAATAGACTCGAAACAAGATTCGAAACAAGTGATGTAAGTACTTCTTACAAATTCTTATTTTCATTTCTCTTATTTCACTTGTTTCAACCAAAAAACATTTATAAACAAATTGATAAACAAGTGATAGTAGTCTATCACTGTCTACCACTTGTATATCAATTGTTTGATAGATAGAGATAGAAGTCTAGATTGTCTATCACGATAGAACATTATTGTTGTCTATCATTGATGGACAACAATAGACTATTATCTCTATCTATCACTAACAGATTCAACCACAATGATTCCAATATTTTTTTCTCTAATAATTTTACATGTATTTTTTTGTAGTTTTGTATGCTTCCACTACATCCAACGGAAGAAGAATCTCAATCAACTACTTTCAAATATTTAATAGATCTAGAGGGAAGGAGAAAGAAAAAGAAAGAGGAACAAGAAAAAAAATAAAGAAATTCAAGAATCAATCGGAAAAGAAAGGCAAAAAAGTGTCTATAAAAGAGATACCGGAAGAAATATAAGAATTGAGAAAAGACCAAAAGAGAGTAGAAGAAAAACAAAAAAATTTGGAATAAGAACAACAAGAAATCATTGGACTGTTGAAAACAATTATGGAATGACTAAATGATAGACTTCCATTAGAAAAACTTCAACAACAACACAAAGAGCATGAAGACATTATTGAAAAAAATAAAGCTCCTTCTTGTAGCATTAGAATTCTAGAAGACAATGATAACATTGACACTATAGTTGAGTATGCAGCAAAATATTTATCTGAGGTAAGACTTTGTTATGTAGTTTTTTATTTTAATTTATTTAAATATAATCATACATATACTAACTAAAATTGCTTTTTCTTGTAGATTGAAAGTGAAAATGAAAGAGAAGAAAATGTTTGTCTAGAACTTTTTGTACAGTAATAAACTTCTATTATTGCTTTTGTTGTTTTTACTTCTATGATTTGTCATTAACTTGATTTGTAAAGTCATAAATAGACACTGATAGATTACTATCTTTGTCTAACTTAGATAGACAATGATAAATTAATTTCAGTATTTGTCTAAGATAGAAAGCAATAACAATCTATACATTCTTTTATTGTACAAAACTGAGATCCAAACACAAATACAAGTGCTTGAAACACAAGATGGTTTGGAACCTATTACAATTGTGGATTAGGAAACACCAAAAACACAAAAACTGCCAACACAAGAAAAGTATGTGTTGCAAACACAACAGTTTGACGATGCTCAAGTACAAAAGGTTTGAATATTTTCTTAAGCTACTGATTTGATTCTTTTTCTTAACCTACTTTCTCTTCTTAGTCATTAAATGTTTATGAGACCGATAAAAGTCTACTAGTGTCTATCTTTGATAGAAAACAATAACAATCAATAAATTATTTTCTTGCAAGAAATTGAAGTTCAAAGTTTGGAAATTGTTTTTGAAGAAAATGATGAACAAGCTCAGATACATAAGGTTTGATTCTTCTCTTAAAATACTTTTTCTTCTAAGTCTCGCTGATTCTCATAGATAGAAGTCTATCGTTGTTTATCTTTCATAGAAAATAGTACAGTGAATAAATTATTTTATTGCAGGAAATTGAAGTTGAAGGTGGGAAAATGGTTGTTGAAGATGATAATGTAGAAGTTGAAATACAAAAGGTTTGATTTTTTCCTTAAGCTAATTTGACTGGTTTGATTATTTTTTTGAGCTATTTGATTTTTTTTTTTAAACTACATTCTTTACTCAGTGAAACTGATAGACACTGACAAAAATCTATCATTGTCTATCTTTGATAGAAAAAAATAACAATTTGTATATATTTTATTACAGGAAACTGAAGTTGAAGGTATGGAAAATGAAGATAATAATGTAGAAGATGAAAATGATGAAAAAGAAAATAGAAGAAGAGAAAGCAAATCAAAACAATTAAGAGAATCTAATCTATCTGGTGAGGAAGAAAATGTAAGAATGGAAAATAGATCAAAGCAAAAAAAAAATGAGAAAAAGGTAAATATACTCAAGAATAATTGTACAACATGTATATTTAAATAACTATATTATTGTTTTAGTGTCCTTCATCCAAAAAGTATCTCATATCATTCTTTATCATTATTTCTATCAGTGTCTATATCATATCATTCTTGCTAAGAAACCGTTTTTGTGGTCTTTTAAGTTTCTAAGTCTTATGAATAAATAGTAGAATAGACAGTGATAGATAGTAGTCTACTGCTATCTATTAAGAATAGATAGTGATAGATAGTAGTCTATAACTCCCCATCACAATAATAGGCTAAGAAAACTCTACTTTGGTCTTCTAAGTCTTTAAGTCTTATTAATTGTGGGATAAATAGAAGGATAGACAGTGAAGATAGACAGTGATAGATAGTAGTCTATCACTCTCTATCACAGTGATATTGTTGTTGATATATTGTTTTATTTCTTAAAAAAACTAAGTATCTCATATCGTTTTTTTTATCAGTATCTATCGACCTTCTTCTTCTTCCTTTTCTTCTGTTATCAGTATCATATATCATTGTTTTTATAAGTTGTTTTCTTGCAGCCTGTTGAGGATGAACATCAAGTTCAGGAAGATAAACTTGAGGAAGACCAACGTCAAGTTGATGAAGAGATTGAAAAGAATCAAGAAATAGGAAAAATAGAAAAGCAAACAAGTGAAAAGAAGGTAAATAGAAAATTAAGGTATTTCTCTTTTCACATTCTATTATTATATCAATAACTTACTTTGATTTTTTCTTACCATCACATTTTCTTAACATTATAGGTTGCTGAAAGAAAAGAGAAACGTAGAAAGTTTAGACCAAAAGTGTTGGAATATGATAGCAACCTTGGAAATGAGAGACCAAAGAGACAAAGAAAACGAACAACGAAGGTAATCAATAAAGCCTCTCCAAAAAAGAAAGTTGAAAAGAAGGTCGAGAAGAAGGAAATGAAGAAAGTCTCCACAATAACAACAACAACAAAATCATTGATGGACTGTACTCCAAGCTTCGACTTGAACATTTCTCAACTAAAATCTCAATCTCAGTCTCAAGCTTCTTAG

mRNA sequence

ATGATAATATGGGAGTGCTTGGGAGTAGATGAATGGAGAAATCTTCATGAAAATGTCTTCGAAATAAGTGATGAAACACCAAAAACACAAAAACTGCCAACACAAGAAAAGTATGTGTTGCAAACACAACAGTTTGACGATGCTCAAGTACAAAAGGAAATTGAAGTTGAAGGTGGGAAAATGGTTGTTGAAGATGATAATGTAGAAGTTGAAATACAAAAGGAAACTGAAGTTGAAGGTATGGAAAATGAAGATAATAATGTAGAAGATGAAAATGATGAAAAAGAAAATAGAAGAAGAGAAAGCAAATCAAAACAATTAAGAGAATCTAATCTATCTGGTGAGGAAGAAAATCCTGTTGAGGATGAACATCAAGTTCAGGAAGATAAACTTGAGGAAGACCAACGTCAAGTTGATGAAGAGATTGAAAAGAATCAAGAAATAGGAAAAATAGAAAAGCAAACAAGTGAAAAGAAGGTTGCTGAAAGAAAAGAGAAACGTAGAAAGTTTAGACCAAAAGTGTTGGAATATGATAGCAACCTTGGAAATGAGAGACCAAAGAGACAAAGAAAACGAACAACGAAGGTAATCAATAAAGCCTCTCCAAAAAAGAAAGTTGAAAAGAAGGTCGAGAAGAAGGAAATGAAGAAAGTCTCCACAATAACAACAACAACAAAATCATTGATGGACTGTACTCCAAGCTTCGACTTGAACATTTCTCAACTAAAATCTCAATCTCAGTCTCAAGCTTCTTAG

Coding sequence (CDS)

ATGATAATATGGGAGTGCTTGGGAGTAGATGAATGGAGAAATCTTCATGAAAATGTCTTCGAAATAAGTGATGAAACACCAAAAACACAAAAACTGCCAACACAAGAAAAGTATGTGTTGCAAACACAACAGTTTGACGATGCTCAAGTACAAAAGGAAATTGAAGTTGAAGGTGGGAAAATGGTTGTTGAAGATGATAATGTAGAAGTTGAAATACAAAAGGAAACTGAAGTTGAAGGTATGGAAAATGAAGATAATAATGTAGAAGATGAAAATGATGAAAAAGAAAATAGAAGAAGAGAAAGCAAATCAAAACAATTAAGAGAATCTAATCTATCTGGTGAGGAAGAAAATCCTGTTGAGGATGAACATCAAGTTCAGGAAGATAAACTTGAGGAAGACCAACGTCAAGTTGATGAAGAGATTGAAAAGAATCAAGAAATAGGAAAAATAGAAAAGCAAACAAGTGAAAAGAAGGTTGCTGAAAGAAAAGAGAAACGTAGAAAGTTTAGACCAAAAGTGTTGGAATATGATAGCAACCTTGGAAATGAGAGACCAAAGAGACAAAGAAAACGAACAACGAAGGTAATCAATAAAGCCTCTCCAAAAAAGAAAGTTGAAAAGAAGGTCGAGAAGAAGGAAATGAAGAAAGTCTCCACAATAACAACAACAACAAAATCATTGATGGACTGTACTCCAAGCTTCGACTTGAACATTTCTCAACTAAAATCTCAATCTCAGTCTCAAGCTTCTTAG

Protein sequence

MIIWECLGVDEWRNLHENVFEISDETPKTQKLPTQEKYVLQTQQFDDAQVQKEIEVEGGKMVVEDDNVEVEIQKETEVEGMENEDNNVEDENDEKENRRRESKSKQLRESNLSGEEENPVEDEHQVQEDKLEEDQRQVDEEIEKNQEIGKIEKQTSEKKVAERKEKRRKFRPKVLEYDSNLGNERPKRQRKRTTKVINKASPKKKVEKKVEKKEMKKVSTITTTTKSLMDCTPSFDLNISQLKSQSQSQAS
Homology
[Close]
BLAST of ClCG03G012890.1 vs. NCBI nr
Match: XP_038887122.1 (nucleolar protein 58-like [Benincasa hispida])

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-06
Identity = 66/158 (41.77%), Postives = 94/158 (59.49%), Query Frame = 0 

Query: 98  RRRESKSKQLRESNLSGEEENPVEDEHQVQEDKLEEDQRQVDEEIEKNQEIGKIEKQTSE 157
           ++ E++    R  ++  +++  VE E  V+E  +EE+    + E EK + +    KQ  E
Sbjct: 27  KKIEAEEHMERIDHVQQKDKIVVEQEEHVEEQVVEEETED-ENENEKKKRLENKRKQPRE 86

Query: 158 KKVA--ERKEKRRKFRPKVLEYDSNLGNERPKRQRKRTTKV--INKASPKKKVEKKVEKK 217
           +KVA  E K KR KFRPK+L+ D  +  ERPK++RK+TTK   +NKAS +KK     +KK
Sbjct: 87  EKVAKSEGKRKRTKFRPKILDDDRKIVYERPKKERKQTTKAKEVNKASSRKK-----QKK 146

Query: 218 EMKKVSTITTTTKSLMDCTPSFDLNISQLKSQSQSQAS 252
           E          T S+MD  PSF+LNISQL SQ+QSQ S
Sbjct: 147 E----------TTSVMDNAPSFNLNISQLNSQTQSQPS 168

The following BLAST results are available for this feature:
BLAST of ClCG03G012890.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038887122.12.2e-0641.77nucleolar protein 58-like [Benincasa hispida][more]
BLAST of ClCG03G012890.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG03G012890.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG03G012890.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 124..148
NoneNo IPR availableCOILSCoilCoilcoord: 78..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..222
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 200..219
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..187

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG03G012890ClCG03G012890gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG03G012890.1-exonClCG03G012890.1-exon-CG_Chr03:26665672..26665950exon
ClCG03G012890.1-exonClCG03G012890.1-exon-CG_Chr03:26666050..26666172exon
ClCG03G012890.1-exonClCG03G012890.1-exon-CG_Chr03:26666771..26666902exon
ClCG03G012890.1-exonClCG03G012890.1-exon-CG_Chr03:26667075..26667140exon
ClCG03G012890.1-exonClCG03G012890.1-exon-CG_Chr03:26667476..26667559exon
ClCG03G012890.1-exonClCG03G012890.1-exon-CG_Chr03:26668947..26669018exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG03G012890.1-cdsClCG03G012890.1-cds-CG_Chr03:26665672..26665950CDS
ClCG03G012890.1-cdsClCG03G012890.1-cds-CG_Chr03:26666050..26666172CDS
ClCG03G012890.1-cdsClCG03G012890.1-cds-CG_Chr03:26666771..26666902CDS
ClCG03G012890.1-cdsClCG03G012890.1-cds-CG_Chr03:26667075..26667140CDS
ClCG03G012890.1-cdsClCG03G012890.1-cds-CG_Chr03:26667476..26667559CDS
ClCG03G012890.1-cdsClCG03G012890.1-cds-CG_Chr03:26668947..26669018CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG03G012890.1ClCG03G012890.1-proteinpolypeptide