ClCG03G006090.2 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G006090.2
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr03: 6366255 .. 6366701 (-)
Sequence length	447
RNA-Seq Expression	ClCG03G006090.2
Synteny	ClCG03G006090.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTATTGGGGTTCCCATTAAGCGTGAAGTTGAGAAACCCCAAATTCTGAGCAGAGGCAGTTCCCTCGATTCCGGTGGTGGGAACGAAAATGAAAACCAAGCCATGCCCAGGAAGGGTATCTCTGTAAGGGGCCATGGCGAAGATGAAAGAAGCGGAGAAAGGGTAGGGGGAAGAGGAATTAGGAGGCTTAGTGGGGATTTTGGAAGGGTACAGAGCGCGGCCGATGGAGAAATTGGTTTGGTTGGTGAGAGCGATGAAAGGGGATTCGATGGTGGCGTTGCCGTAGAGGGAGACGGCGGTGGAATTGAAGCCATTGAAGAGAAAATCGACGGCGGAAATGGAGGAGAAAAGAAGAAGGGGGAAAGAGAGGAGGAGAAATGGGAGTTTGAGTACGGCCATGGGAGCAGAGAAAAACAGAGGAAAATGGAGAAAGAGGAAGAGTAA

mRNA sequence

ATGGTTATTGGGGTTCCCATTAAGCGTGAAGTTGAGAAACCCCAAATTCTGAGCAGAGGCAGTTCCCTCGATTCCGGTGGTGGGAACGAAAATGAAAACCAAGCCATGCCCAGGAAGGGTATCTCTGTAAGGGGCCATGGCGAAGATGAAAGAAGCGGAGAAAGGGTAGGGGGAAGAGGAATTAGGAGGCTTAGTGGGGATTTTGGAAGGGTACAGAGCGCGGCCGATGGAGAAATTGGTTTGGTTGGTGAGAGCGATGAAAGGGGATTCGATGGTGGCGTTGCCGTAGAGGGAGACGGCGGTGGAATTGAAGCCATTGAAGAGAAAATCGACGGCGGAAATGGAGGAGAAAAGAAGAAGGGGGAAAGAGAGGAGGAGAAATGGGAGTTTGAGTACGGCCATGGGAGCAGAGAAAAACAGAGGAAAATGGAGAAAGAGGAAGAGTAA

Coding sequence (CDS)

ATGGTTATTGGGGTTCCCATTAAGCGTGAAGTTGAGAAACCCCAAATTCTGAGCAGAGGCAGTTCCCTCGATTCCGGTGGTGGGAACGAAAATGAAAACCAAGCCATGCCCAGGAAGGGTATCTCTGTAAGGGGCCATGGCGAAGATGAAAGAAGCGGAGAAAGGGTAGGGGGAAGAGGAATTAGGAGGCTTAGTGGGGATTTTGGAAGGGTACAGAGCGCGGCCGATGGAGAAATTGGTTTGGTTGGTGAGAGCGATGAAAGGGGATTCGATGGTGGCGTTGCCGTAGAGGGAGACGGCGGTGGAATTGAAGCCATTGAAGAGAAAATCGACGGCGGAAATGGAGGAGAAAAGAAGAAGGGGGAAAGAGAGGAGGAGAAATGGGAGTTTGAGTACGGCCATGGGAGCAGAGAAAAACAGAGGAAAATGGAGAAAGAGGAAGAGTAA

Protein sequence

MVIGVPIKREVEKPQILSRGSSLDSGGGNENENQAMPRKGISVRGHGEDERSGERVGGRGIRRLSGDFGRVQSAADGEIGLVGESDERGFDGGVAVEGDGGGIEAIEEKIDGGNGGEKKKGEREEEKWEFEYGHGSREKQRKMEKEEE

Homology

The following BLAST results are available for this feature:

BLAST of ClCG03G006090.2 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG03G006090.2 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG03G006090.2 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG03G006090.2 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..148

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG03G006090	ClCG03G006090	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G006090.2-exon	ClCG03G006090.2-exon-CG_Chr03:6366255..6366701	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G006090.2-cds	ClCG03G006090.2-cds-CG_Chr03:6366255..6366701	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG03G006090.2	ClCG03G006090.2-protein	polypeptide