ClCG03G000550.2 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G000550.2
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr03: 561899 .. 563009 (+)
Sequence length	441
RNA-Seq Expression	ClCG03G000550.2
Synteny	ClCG03G000550.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGATTCTACTGTCTCCAGCCTTCTTCCCTCCGCCGTTCGTCTGTATTTGAGGACGCTCACTTTACAGACAGCACTCAAACTTTTTTCGCAGCGTCGCCATGAGAGCTAAGGTAATTGTTGTCAAAATTCATCCATAGATTCAACTTGTATTCAGGTTTAACATCTTTTTCGAGATGCTTCATTGGCTCTGACATTTTGTTTTTTTTTTTCGTTTCCTGGCAGTGGAAGAAGAAGAGAATGAGGAGGTTGAAGAGAAAGCGCCGAAAGATGAGGCAGAGATCGAAGTAGCGACCGTTTTCTTAGGGATGGTTTCCAACCTAGGGTTTTGGTTACTGTTTAGATTTCTTTATGTTATCTTAGTTTTCAACCGTTTTGCATTGTTTTTAAATTGCTTTGTGATCGACACATTTTGTTGTCTTTAATCGAGAACTGGTTTTCCAGCTTTACAGTTTTTATCTAGTGATTTCTATGCTATATATTTGTTCTAATGATTGCCATTTCAAAGATGCAATAGTCTAATTAATTAGCTTTTGCCTTCCTGAATGAATACCATTACTTAGCTTTCTCTATTCTCTTTAAACATGAGCCATTGTTCATCTTCTGGAAGTACTTAAATTTAGGAGTGTAGTTGGTGATTGGAGACTGTATGACAGATAAACTTGCGATGAGTAGGCCTTTTAGATGGGTCTCCTTTTCTCAATGATTCATTATTGCATTGGTCTGCATTTTGATTAAAATACTCTTGTTGGTCATGGTTGTAATATTTTGTTTGGTGATTTTTCCGAAACATCAAGTTCATCTTATCTAGCTTTGCTTGTTTTCGAGAAAGAAATCCTTGGCCAGCTATTAATTCTAGAGACCCATTCTGTAAGTGGTGGAATATGGAGTTTTTGGGGGAAGTTTTCTACAGCTCAATTAAAGAAAATGTAGGCATTAGGATGCCTGGATATGTGGCGGTTGAATCCCGATACCACATTATAGAAGAAGAGAAACTTTGTTCTAGTGAAAACCGATCTCTCCATATTTTAGTTAGGACCCATTGGATGGTTTCTCTTGGAGTTTTATCTTTTTCATTAGTTCTTTTTTATAGAGCTAGGTGTAGTTAA

mRNA sequence

ATGGTTGATTCTACTGTCTCCAGCCTTCTTCCCTCCGCCGTTCTGGAAGAAGAAGAGAATGAGGAGGTTGAAGAGAAAGCGCCGAAAGATGAGGCAGAGATCGAAGTAGCGACCGTTTTCTTAGGGATGGTTTCCAACCTAGGCTTTGCTTGTTTTCGAGAAAGAAATCCTTGGCCAGCTATTAATTCTAGAGACCCATTCTGTAAGTGGTGGAATATGGAGTTTTTGGGGGAAGTTTTCTACAGCTCAATTAAAGAAAATGTAGGCATTAGGATGCCTGGATATGTGGCGGTTGAATCCCGATACCACATTATAGAAGAAGAGAAACTTTGTTCTAGTGAAAACCGATCTCTCCATATTTTAGTTAGGACCCATTGGATGGTTTCTCTTGGAGTTTTATCTTTTTCATTAGTTCTTTTTTATAGAGCTAGGTGTAGTTAA

Coding sequence (CDS)

ATGGTTGATTCTACTGTCTCCAGCCTTCTTCCCTCCGCCGTTCTGGAAGAAGAAGAGAATGAGGAGGTTGAAGAGAAAGCGCCGAAAGATGAGGCAGAGATCGAAGTAGCGACCGTTTTCTTAGGGATGGTTTCCAACCTAGGCTTTGCTTGTTTTCGAGAAAGAAATCCTTGGCCAGCTATTAATTCTAGAGACCCATTCTGTAAGTGGTGGAATATGGAGTTTTTGGGGGAAGTTTTCTACAGCTCAATTAAAGAAAATGTAGGCATTAGGATGCCTGGATATGTGGCGGTTGAATCCCGATACCACATTATAGAAGAAGAGAAACTTTGTTCTAGTGAAAACCGATCTCTCCATATTTTAGTTAGGACCCATTGGATGGTTTCTCTTGGAGTTTTATCTTTTTCATTAGTTCTTTTTTATAGAGCTAGGTGTAGTTAA

Protein sequence

MVDSTVSSLLPSAVLEEEENEEVEEKAPKDEAEIEVATVFLGMVSNLGFACFRERNPWPAINSRDPFCKWWNMEFLGEVFYSSIKENVGIRMPGYVAVESRYHIIEEEKLCSSENRSLHILVRTHWMVSLGVLSFSLVLFYRARCS

Homology

The following BLAST results are available for this feature:

BLAST of ClCG03G000550.2 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG03G000550.2 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG03G000550.2 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG03G000550.2 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 13..33

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG03G000550	ClCG03G000550	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G000550.2-exon	ClCG03G000550.2-exon-CG_Chr03:561899..561941	exon
ClCG03G000550.2-exon	ClCG03G000550.2-exon-CG_Chr03:562126..562225	exon
ClCG03G000550.2-exon	ClCG03G000550.2-exon-CG_Chr03:562712..563009	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G000550.2-cds	ClCG03G000550.2-cds-CG_Chr03:561899..561941	CDS
ClCG03G000550.2-cds	ClCG03G000550.2-cds-CG_Chr03:562126..562225	CDS
ClCG03G000550.2-cds	ClCG03G000550.2-cds-CG_Chr03:562712..563009	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG03G000550.2	ClCG03G000550.2-protein	polypeptide