ClCG01G018635.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G018635.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr01: 33152745 .. 33153368 (-)
Sequence length	405
RNA-Seq Expression	ClCG01G018635.1
Synteny	ClCG01G018635.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAAAGCCCTTCCTAGTAGTATGGCATGTATCGCATGGGCCTTCGGAAACGGGGCGTTTTCCTGTAGCAGGATGTGAGGAAAATGATTTGAGTATCAACCCTGATAGATGTGTATATATAATATATATATGTCACGCAGGAAACTTACCCATATCCTCCATATGGTGAGTAAAAATAAGGGGCCATGTAAGGCCTCCTGGATCGATAACCCATGTAAGGATTGTAACGCTGAGGAAAATACTGCTTCATCCCAGGAATATTTGTTCGCTTTTGTTGAACCTGAGATGAATAGGATGATATTAAAACCATTTGTCAGAAGTTATTAGAACTTGAATTACATGTTCAGATAAATAGGATGAAATTAAAACCATTTGTCAGAAGTTATTAGAACTTGAACTACATGTACAGATAATGACGCCAATAATACAAGGTGTATAATAAGTATGCCAATTCGAATACTTGACGGAACAGACGCATGGATCATCCTTTTCTCCAAGGAACTACCTTCAATTGTCTTCCATGCAACTCTGACTCATTTAAAAGGAGTGCCTCCTGAACAGCTTCGGCTTCAACAAACTCCACATAAGCGAAGCCCTTGGGATGACCAAATTTATCCGTAA

mRNA sequence

ATGAGCAAAGCCCTTCCTAGTAGTATGGCATGTATCGCATGGGCCTTCGGAAACGGGGCGTTTTCCTGTAGCAGGATGAAACTTACCCATATCCTCCATATGGTGAGTAAAAATAAGGGGCCATGTAAGGCCTCCTGGATCGATAACCCATGTAAGGATTGTAACGCTGAGGAAAATACTGCTTCATCCCAGGAATATTTGTTCGCTTTTGTTGAACCTGAGATGAATAGGATGATATTAAAACCATTTGTCAGAAACGCATGGATCATCCTTTTCTCCAAGGAACTACCTTCAATTGTCTTCCATGCAACTCTGACTCATTTAAAAGGAGTGCCTCCTGAACAGCTTCGGCTTCAACAAACTCCACATAAGCGAAGCCCTTGGGATGACCAAATTTATCCGTAA

Coding sequence (CDS)

ATGAGCAAAGCCCTTCCTAGTAGTATGGCATGTATCGCATGGGCCTTCGGAAACGGGGCGTTTTCCTGTAGCAGGATGAAACTTACCCATATCCTCCATATGGTGAGTAAAAATAAGGGGCCATGTAAGGCCTCCTGGATCGATAACCCATGTAAGGATTGTAACGCTGAGGAAAATACTGCTTCATCCCAGGAATATTTGTTCGCTTTTGTTGAACCTGAGATGAATAGGATGATATTAAAACCATTTGTCAGAAACGCATGGATCATCCTTTTCTCCAAGGAACTACCTTCAATTGTCTTCCATGCAACTCTGACTCATTTAAAAGGAGTGCCTCCTGAACAGCTTCGGCTTCAACAAACTCCACATAAGCGAAGCCCTTGGGATGACCAAATTTATCCGTAA

Protein sequence

MSKALPSSMACIAWAFGNGAFSCSRMKLTHILHMVSKNKGPCKASWIDNPCKDCNAEENTASSQEYLFAFVEPEMNRMILKPFVRNAWIILFSKELPSIVFHATLTHLKGVPPEQLRLQQTPHKRSPWDDQIYP

Homology

The following BLAST results are available for this feature:

BLAST of ClCG01G018635.1 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG01G018635.1 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG01G018635.1 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG01G018635.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..134
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..23 score: 5.0

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG01G018635	ClCG01G018635	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG01G018635.1-exon	ClCG01G018635.1-exon-CG_Chr01:33152745..33152893	exon
ClCG01G018635.1-exon	ClCG01G018635.1-exon-CG_Chr01:33153047..33153225	exon
ClCG01G018635.1-exon	ClCG01G018635.1-exon-CG_Chr01:33153292..33153368	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG01G018635.1-cds	ClCG01G018635.1-cds-CG_Chr01:33152745..33152893	CDS
ClCG01G018635.1-cds	ClCG01G018635.1-cds-CG_Chr01:33153047..33153225	CDS
ClCG01G018635.1-cds	ClCG01G018635.1-cds-CG_Chr01:33153292..33153368	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG01G018635.1	ClCG01G018635.1-protein	polypeptide