Chy9G165080.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy9G165080.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH09: 10633973 .. 10635206 (-)
Sequence length	339
RNA-Seq Expression	Chy9G165080.1
Synteny	Chy9G165080.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTATAAATTCAACAGGTTTGTGATTCAATTCTTCTTATTCTCAAAAGTATTTTAAAGTATTAATAATATAAAATAGCTATAAAATACCATTTAATTTCTGATGTAGATAACTTGAAGCTCAAACAACCAAAATTTATTTTAAAAACTACAACAATCACACACAAAAACCTCAAATAAAAGACAAAAGATACAAGTGAGAATGGTATATCTTCATCGTTTTCTAAAATTAAAATATACTATATAGATATACATTTGTTTGAGTTCAAGATTCAAACTTCATACATACTAATTTAAAAAAAAAAAGAAAAAGAAAAATAACAATTACAAATATAGCAAGCATGTTCCAAACTATTAACAAACAAATATAATAGTGTAACAAATATTTTTAACATTGCAAAATTTAGGTTCAAATCTTAGAATTATTATTAGGACTATATATCGCTAGTAAAAATCTACTAGTGATAGACTATATCAATAATAAAAGTATACAAGTGATAGAATTTACCACTCATGAACTTTGTTAAGTTTGTAATGTTAATTATTAACCATAAAAATACACCTCCATGCAATTATCCATAAAATAATTCTTATAATTTAGAAATTAGAAAAGAAAATGGGGTGGTGAGAAGAATAGCAAATTATAGGTTTTACTTTGAGAAAATAGCAAAAATAATTTTAAATTGTTAGAATAGCAAAACATAAAAAATAGAACCATAAATAAATAAAGCAATCCCTCAAATACCCTTATCCCAACTGAAAAATACAAATTGTTTACCCAAAAACATAAATCTCAATTACATTGTAATTGAAATAACAAATGCTAAAAAAAAAAAAACTTGAACAAAAAGCTACGTGCGGTTGAAATCAATAATCGCTGCAAATGAACGAAGAAAACGACTTACGTATACAGAGACGATCTAACTAAGAAGAACCACTCACCACCCTCGTCATCATCCTCACCGCAACGCCAACCGGAGGAGATCAAGAAAGTGAAGAAGAGAGTGACATTTGCCGACATGGAATCGGTGATAATCGCCATTAGTACTGAGAGGAGGAGGAGTTGGAGGATGAACAGAGAAGAAAGTGAGAATTATGGTGAAATTGAAGAAAAAGCGAATCAGATGCTTTCGAGGTGCTCCAATGGTGGCGTTCTTGAATTCGGAGATGTGGCTTTTGAACTCATGAGGATTCCTCCAACTCAAGTTAGTTCATCTCTGGTGGCCAATTGA

mRNA sequence

ATGTGTTATAAATTCAACAGAGACGATCTAACTAAGAAGAACCACTCACCACCCTCGTCATCATCCTCACCGCAACGCCAACCGGAGGAGATCAAGAAAGTGAAGAAGAGAGTGACATTTGCCGACATGGAATCGGTGATAATCGCCATTAGTACTGAGAGGAGGAGGAGTTGGAGGATGAACAGAGAAGAAAGTGAGAATTATGGTGAAATTGAAGAAAAAGCGAATCAGATGCTTTCGAGGTGCTCCAATGGTGGCGTTCTTGAATTCGGAGATGTGGCTTTTGAACTCATGAGGATTCCTCCAACTCAAGTTAGTTCATCTCTGGTGGCCAATTGA

Coding sequence (CDS)

ATGTGTTATAAATTCAACAGAGACGATCTAACTAAGAAGAACCACTCACCACCCTCGTCATCATCCTCACCGCAACGCCAACCGGAGGAGATCAAGAAAGTGAAGAAGAGAGTGACATTTGCCGACATGGAATCGGTGATAATCGCCATTAGTACTGAGAGGAGGAGGAGTTGGAGGATGAACAGAGAAGAAAGTGAGAATTATGGTGAAATTGAAGAAAAAGCGAATCAGATGCTTTCGAGGTGCTCCAATGGTGGCGTTCTTGAATTCGGAGATGTGGCTTTTGAACTCATGAGGATTCCTCCAACTCAAGTTAGTTCATCTCTGGTGGCCAATTGA

Protein sequence

MCYKFNRDDLTKKNHSPPSSSSSPQRQPEEIKKVKKRVTFADMESVIIAISTERRRSWRMNREESENYGEIEEKANQMLSRCSNGGVLEFGDVAFELMRIPPTQVSSSLVAN*

Homology

[Close]

BLAST of Chy9G165080.1 vs. ExPASy TrEMBL
Match: A0A0A0KYE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.4e-29
Identity = 78/111 (70.27%), Postives = 87/111 (78.38%), Query Frame = 0


Query: 7   RDDLTKKNHSPPSSSSSPQRQPEEIKKVKKRVTFADMESVIIAISTERRRSWRMNREESE 66
           RD+LTKKNHSPPSSSSSPQ QPEEIKKVKKRV FAD E VIIAIST+R     +  E  +
Sbjct: 33  RDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVIIAISTDREEE-ELEVETEK 92

Query: 67  NYGEI-----EEKANQMLSRCSNGGVLEFGDVAFELMRIPPTQVSSSLVAN 113
               I     +++AN+MLSRCSNGGVLEFGDVA ELMRIPPT+V SSLVAN
Sbjct: 93  KVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPTRVRSSLVAN 142

[Close]

BLAST of Chy9G165080.1 vs. ExPASy TrEMBL
Match: A0A5D3D246 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003900 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.1e-27
Identity = 76/114 (66.67%), Postives = 85/114 (74.56%), Query Frame = 0


Query: 7   RDDLTKKNHSPPSSSSSPQRQPEEIKKVKKRVTFADMESVIIAISTERRRSWRMNREESE 66
           RDDLTKK HSPP SSSSPQ QP EIKKVKKRV FAD E VIIAIST+R        EE E
Sbjct: 33  RDDLTKKKHSPPLSSSSPQHQPAEIKKVKKRVRFADTEPVIIAISTDR------EEEEEE 92

Query: 67  NYGEI--------EEKANQMLSRCSNGGVLEFGDVAFELMRIPPTQVSSSLVAN 113
              ++        +++AN+MLSRCSN GVLEFGDVA EL+RIPPT+VSSSLVAN
Sbjct: 93  TEKKVVRITVKLTKQEANRMLSRCSNDGVLEFGDVASELLRIPPTRVSSSLVAN 140

[Close]

BLAST of Chy9G165080.1 vs. ExPASy TrEMBL
Match: A0A1S3BS40 (uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.1e-27
Identity = 76/114 (66.67%), Postives = 85/114 (74.56%), Query Frame = 0


Query: 7   RDDLTKKNHSPPSSSSSPQRQPEEIKKVKKRVTFADMESVIIAISTERRRSWRMNREESE 66
           RDDLTKK HSPP SSSSPQ QP EIKKVKKRV FAD E VIIAIST+R        EE E
Sbjct: 33  RDDLTKKKHSPPLSSSSPQHQPAEIKKVKKRVRFADTEPVIIAISTDR------EEEEEE 92

Query: 67  NYGEI--------EEKANQMLSRCSNGGVLEFGDVAFELMRIPPTQVSSSLVAN 113
              ++        +++AN+MLSRCSN GVLEFGDVA EL+RIPPT+VSSSLVAN
Sbjct: 93  TEKKVVRITVKLTKQEANRMLSRCSNDGVLEFGDVASELLRIPPTRVSSSLVAN 140

[Close]

BLAST of Chy9G165080.1 vs. ExPASy TrEMBL
Match: A0A0A0KZ22 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G091930 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.0e-24
Identity = 68/106 (64.15%), Postives = 79/106 (74.53%), Query Frame = 0


Query: 7   RDDLTKKNHSPPSSSSSPQRQPEEIKKVKKRVTFADMESVIIAISTERRRSWRMNREESE 66
           RDDLTKKNHSPPSSSSSPQRQ +EIKKVKKRV F D E     +  E  ++ R+  +   
Sbjct: 9   RDDLTKKNHSPPSSSSSPQRQSKEIKKVKKRVRFVDTEPEEEELEDETEKNVRIMVKLK- 68

Query: 67  NYGEIEEKANQMLSRCSNGGVLEFGDVAFELMRIPPTQVSSSLVAN 113
                +++ANQMLSRC NGGVLEFGDV FELMRIPPT+VSSSLV +
Sbjct: 69  -----KQEANQMLSRCFNGGVLEFGDVTFELMRIPPTRVSSSLVTS 108

[Close]

BLAST of Chy9G165080.1 vs. ExPASy TrEMBL
Match: A0A6J1JBA8 (uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.1e-14
Identity = 59/109 (54.13%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 7   RDDLTKKNHSPPSSSSSPQRQPEEIKKVKKRVTFADMESVIIAISTERRRSWRMNREESE 66
           R D++KK    P S S  Q +P EI+KVKKRV FAD E VIIAI  E R +     EE+E
Sbjct: 33  RRDMSKKKQ--PQSPSPSQGKP-EIEKVKKRVRFADTEPVIIAIDREERST----EEETE 92

Query: 67  ------NYGEIEEKANQMLSRCSNGGVLEFGDVAFELMRIPPTQVSSSL 110
                      +++AN+MLSRCS+GGVLEFGDVA ELMRIP  +VSSS+
Sbjct: 93  KKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVASELMRIPAARVSSSM 134

[Close]

BLAST of Chy9G165080.1 vs. NCBI nr
Match: KAE8649206.1 (hypothetical protein Csa_015041 [Cucumis sativus])

HSP 1 Score: 135 bits (341), Expect = 1.98e-38
Identity = 82/118 (69.49%), Postives = 87/118 (73.73%), Query Frame = 0


Query: 7   RDDLTKKNHSPPSSSSSPQRQPEEIKKVKKRVTFADMESVIIAISTERRRSWRMNREESE 66
           RD+LTKKNHSPPSSSSSPQ QPEEIKKVKKRV FAD E VIIAIST+R        EE E
Sbjct: 25  RDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVIIAISTDR--------EEEE 84

Query: 67  NYGEIEEK------------ANQMLSRCSNGGVLEFGDVAFELMRIPPTQVSSSLVAN 112
              E E+K            AN+MLSRCSNGGVLEFGDVA ELMRIPPT+V SSLVAN
Sbjct: 85  LEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPTRVRSSLVAN 134

[Close]

BLAST of Chy9G165080.1 vs. NCBI nr
Match: XP_011653217.1 (uncharacterized protein LOC105435188 [Cucumis sativus])

HSP 1 Score: 135 bits (341), Expect = 2.52e-38
Identity = 82/118 (69.49%), Postives = 87/118 (73.73%), Query Frame = 0


Query: 7   RDDLTKKNHSPPSSSSSPQRQPEEIKKVKKRVTFADMESVIIAISTERRRSWRMNREESE 66
           RD+LTKKNHSPPSSSSSPQ QPEEIKKVKKRV FAD E VIIAIST+R        EE E
Sbjct: 33  RDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVIIAISTDR--------EEEE 92

Query: 67  NYGEIEEK------------ANQMLSRCSNGGVLEFGDVAFELMRIPPTQVSSSLVAN 112
              E E+K            AN+MLSRCSNGGVLEFGDVA ELMRIPPT+V SSLVAN
Sbjct: 93  LEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPTRVRSSLVAN 142

[Close]

BLAST of Chy9G165080.1 vs. NCBI nr
Match: XP_008451951.1 (PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo] >KAA0044901.1 uncharacterized protein E6C27_scaffold74G001940 [Cucumis melo var. makuwa] >TYK16569.1 uncharacterized protein E5676_scaffold21G003900 [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (325), Expect = 6.41e-36
Identity = 76/114 (66.67%), Postives = 85/114 (74.56%), Query Frame = 0


Query: 7   RDDLTKKNHSPPSSSSSPQRQPEEIKKVKKRVTFADMESVIIAISTERRRSWRMNREESE 66
           RDDLTKK HSPP SSSSPQ QP EIKKVKKRV FAD E VIIAIST+R        EE E
Sbjct: 33  RDDLTKKKHSPPLSSSSPQHQPAEIKKVKKRVRFADTEPVIIAISTDR------EEEEEE 92

Query: 67  NYGEI--------EEKANQMLSRCSNGGVLEFGDVAFELMRIPPTQVSSSLVAN 112
              ++        +++AN+MLSRCSN GVLEFGDVA EL+RIPPT+VSSSLVAN
Sbjct: 93  TEKKVVRITVKLTKQEANRMLSRCSNDGVLEFGDVASELLRIPPTRVSSSLVAN 140

[Close]

BLAST of Chy9G165080.1 vs. NCBI nr
Match: XP_038906331.1 (uncharacterized protein LOC120092170 [Benincasa hispida])

HSP 1 Score: 110 bits (275), Expect = 2.34e-28
Identity = 70/112 (62.50%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 7   RDDLTKKNHSPPSSSSSPQRQPEEIKKVKKRVTFADMESVIIAISTERRRSWRMNREESE 66
           RDDL+KK  SPP SSS PQ    EIKKVKKRV FAD E VIIAI+ +  RS     EE+E
Sbjct: 33  RDDLSKKKQSPPPSSSQPQ---PEIKKVKKRVRFADTEPVIIAITDKEERS---TEEETE 92

Query: 67  N------YGEIEEKANQMLSRCSNGGVLEFGDVAFELMRIPPTQVSSSLVAN 112
                      +E+AN+MLSRCS+GGVLEFGDVA ELMRIP T+VSSS+VAN
Sbjct: 93  KKVVRITVKLTKEEANRMLSRCSDGGVLEFGDVACELMRIPATRVSSSMVAN 138

[Close]

BLAST of Chy9G165080.1 vs. NCBI nr
Match: KAG6600516.1 (hypothetical protein SDJN03_05749, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031155.1 hypothetical protein SDJN02_05195, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 89.7 bits (221), Expect = 3.12e-20
Identity = 61/110 (55.45%), Postives = 74/110 (67.27%), Query Frame = 0


Query: 7   RDDLTKKNHSPPSSSSSPQRQPEEIKKVKKRVTFADMESVIIAIS----TERRRSWRMNR 66
           RDDL KK  SP S     Q+QPE IKKVKKRV FA+ E VIIAI     TE++R  R+  
Sbjct: 37  RDDLNKKKQSPSS-----QQQPE-IKKVKKRVRFAETEPVIIAIDAEEETEKKRVVRITV 96

Query: 67  EESENYGEIEEKANQMLSRCSNGGVLEFGDVAFELMRIPPTQVSSSLVAN 112
           + ++      ++AN+MLSRCS GGVLE GD A ELMRIP  +V SS+VAN
Sbjct: 97  KVTK------QEANRMLSRCSEGGVLELGDAACELMRIPAARVRSSMVAN 134

The following BLAST results are available for this feature:

BLAST of Chy9G165080.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy9G165080.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYE1	3.4e-29	70.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1	[more]
A0A5D3D246	1.1e-27	66.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BS40	1.1e-27	66.67	uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=...	[more]
A0A0A0KZ22	2.0e-24	64.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G091930 PE=4 SV=1	[more]
A0A6J1JBA8	3.1e-14	54.13	uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436...	[more]

BLAST of Chy9G165080.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649206.1	1.98e-38	69.49	hypothetical protein Csa_015041 [Cucumis sativus]	[more]
XP_011653217.1	2.52e-38	69.49	uncharacterized protein LOC105435188 [Cucumis sativus]	[more]
XP_008451951.1	6.41e-36	66.67	PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo] >KAA0044901.1 unc...	[more]
XP_038906331.1	2.34e-28	62.50	uncharacterized protein LOC120092170 [Benincasa hispida]	[more]
KAG6600516.1	3.12e-20	55.45	hypothetical protein SDJN03_05749, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Chy9G165080.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	PANTHER	PTHR36782:SF1	BNAC03G62080D PROTEIN	coord: 6..110
None	No IPR available	PANTHER	PTHR36782	BNAC03G62080D PROTEIN	coord: 6..110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy9G165080	Chy9G165080	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy9G165080.1.exon2	Chy9G165080.1.exon2	exon
Chy9G165080.1.exon1	Chy9G165080.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy9G165080.1.cds2	Chy9G165080.1.cds2	CDS
Chy9G165080.1.cds1	Chy9G165080.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy9G165080.1	Chy9G165080.1-protein	polypeptide