Chy8G146080.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy8G146080.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH08: 74239 .. 74606 (-)
Sequence length	368
RNA-Seq Expression	Chy8G146080.1
Synteny	Chy8G146080.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATCGATCTTCATCCAACCCGTAACTACAGTCGTAATCTTCAACCAAATTGAATATGGAATACCTGTGACCGTTCACTGCAAATCCAAGAACGATGACCTAGGAGTCCATGTCCTTCCGCTTGGACAAGGCTACTCGTTCAAGTTCAGACCCAACCTCGTGGGGACGACCCTGTTTTTCTGCAGCTTCACATGGACTGGACAACACCAAATCTACTGGTTCAATGTCTTCGACGACAAAAGGGATGCAGGGAAATGCACCACGTGCAGATGGATCATTCATGAATATAGCATGTGCTTGCAAGACCCGCAAAACCCTGGCAAAGAAATTTGCTATAACTACGGAGATAAGGAGCCAAGCATTATGTAA

mRNA sequence

GATCGATCTTCATCCAACCCGTAACTACAGTCGTAATCTTCAACCAAATTGAATATGGAATACCTGTGACCGTTCACTGCAAATCCAAGAACGATGACCTAGGAGTCCATGTCCTTCCGCTTGGACAAGGCTACTCGTTCAAGTTCAGACCCAACCTCGTGGGGACGACCCTGTTTTTCTGCAGCTTCACATGGACTGGACAACACCAAATCTACTGGTTCAATGTCTTCGACGACAAAAGGGATGCAGGGAAATGCACCACGTGCAGATGGATCATTCATGAATATAGCATGTGCTTGCAAGACCCGCAAAACCCTGGCAAAGAAATTTGCTATAACTACGGAGATAAGGAGCCAAGCATTATGTAA

Coding sequence (CDS)

GATCGATCTTCATCCAACCCGTAACTACAGTCGTAATCTTCAACCAAATTGAATATGGAATACCTGTGACCGTTCACTGCAAATCCAAGAACGATGACCTAGGAGTCCATGTCCTTCCGCTTGGACAAGGCTACTCGTTCAAGTTCAGACCCAACCTCGTGGGGACGACCCTGTTTTTCTGCAGCTTCACATGGACTGGACAACACCAAATCTACTGGTTCAATGTCTTCGACGACAAAAGGGATGCAGGGAAATGCACCACGTGCAGATGGATCATTCATGAATATAGCATGTGCTTGCAAGACCCGCAAAACCCTGGCAAAGAAATTTGCTATAACTACGGAGATAAGGAGCCAAGCATTATGTAA

Protein sequence

DRSSSNP*LQS*SSTKLNMEYL*PFTANPRTMT*ESMSFRLDKATRSSSDPTSWGRPCFSAASHGLDNTKSTGSMSSTTKGMQGNAPRADGSFMNIACACKTRKTLAKKFAITTEIRSQALCX

Homology

[Close]

BLAST of Chy8G146080.1 vs. NCBI nr
Match: KAE8649706.1 (hypothetical protein Csa_012067 [Cucumis sativus])

HSP 1 Score: 162 bits (409), Expect = 7.54e-49
Identity = 82/85 (96.47%), Postives = 82/85 (96.47%), Query Frame = 0


Query: 37  MSFRLDKATRSSSDPTSWGRPCFSAASHGLDNTKSTGSMSSTTKGMQGNAPRADGSFMNI 96
           MSF LDKATRSSSDPTSWGRPCFSAASHGLDNTKSTGSMSSTTKGMQGNAP A GSFMNI
Sbjct: 1   MSFHLDKATRSSSDPTSWGRPCFSAASHGLDNTKSTGSMSSTTKGMQGNAPHAHGSFMNI 60

Query: 97  ACACKTRKTLAKKFAITTEIRSQAL 121
           ACACKTRKTLAKKFAITTEIRSQAL
Sbjct: 61  ACACKTRKTLAKKFAITTEIRSQAL 85

[Close]

BLAST of Chy8G146080.1 vs. NCBI nr
Match: KAE8649710.1 (hypothetical protein Csa_012088, partial [Cucumis sativus])

HSP 1 Score: 127 bits (320), Expect = 6.27e-35
Identity = 65/71 (91.55%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 51  PTSWGRPCFSAASHGLDNTKSTGSMSSTTKGMQGNAPRADGSFMNIACACKTRKTLAKKF 110
           P   GRPCFSAASHGLDNTKSTGSMSSTTKGMQGNAP A GSFMNIACACKTRKTLAKKF
Sbjct: 74  PNLVGRPCFSAASHGLDNTKSTGSMSSTTKGMQGNAPHAHGSFMNIACACKTRKTLAKKF 133

Query: 111 AITTEIRSQAL 121
           AITTEIRSQ L
Sbjct: 134 AITTEIRSQTL 144

[Close]

BLAST of Chy8G146080.1 vs. NCBI nr
Match: KAE8649755.1 (hypothetical protein Csa_023757, partial [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 2.81e-19
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 63  SHGLDNTKSTGSMSSTTKGMQGNAPRADGSFMNIACACKTRKTLAKK 109
           SHGLDNTKSTGSMSSTTKGMQGNAP ADGSFMNIACACKTRK   K+
Sbjct: 1   SHGLDNTKSTGSMSSTTKGMQGNAPHADGSFMNIACACKTRKNPGKE 47

[Close]

BLAST of Chy8G146080.1 vs. NCBI nr
Match: KAE8649752.1 (hypothetical protein Csa_023768, partial [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 7.82e-19
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 63  SHGLDNTKSTGSMSSTTKGMQGNAPRADGSFMNIACACKTRK 104
           SHGLDNTKSTGSMSSTTKGMQGNAP ADGSFMNIACACKTRK
Sbjct: 1   SHGLDNTKSTGSMSSTTKGMQGNAPHADGSFMNIACACKTRK 42

[Close]

BLAST of Chy8G146080.1 vs. NCBI nr
Match: KAE8649754.1 (hypothetical protein Csa_023747, partial [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 1.34e-10
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 63 SHGLDNTKSTGSMSSTTKGMQGNAPRADGSFM 94
          SHGLDNTKSTGSMSSTTKGMQGNAP ADGSFM
Sbjct: 1  SHGLDNTKSTGSMSSTTKGMQGNAPHADGSFM 32

The following BLAST results are available for this feature:

BLAST of Chy8G146080.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy8G146080.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy8G146080.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649706.1	7.54e-49	96.47	hypothetical protein Csa_012067 [Cucumis sativus]	[more]
KAE8649710.1	6.27e-35	91.55	hypothetical protein Csa_012088, partial [Cucumis sativus]	[more]
KAE8649755.1	2.81e-19	89.36	hypothetical protein Csa_023757, partial [Cucumis sativus]	[more]
KAE8649752.1	7.82e-19	97.62	hypothetical protein Csa_023768, partial [Cucumis sativus]	[more]
KAE8649754.1	1.34e-10	96.88	hypothetical protein Csa_023747, partial [Cucumis sativus]	[more]

BLAST of Chy8G146080.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..83

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy8G146080	Chy8G146080	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy8G146080.1.exon1	Chy8G146080.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy8G146080.1.cds1	Chy8G146080.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy8G146080.1	Chy8G146080.1-protein	polypeptide