Chy7G132430.1 (mRNA) Cucumber (hystrix) v1

Overview
NameChy7G132430.1
TypemRNA
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH07: 3252211 .. 3252682 (-)
Sequence length319
RNA-Seq ExpressionChy7G132430.1
SyntenyChy7G132430.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATGGAAGGTTAAAAAGAAAAATGGATTGAAGGATATAGTAAAGTTTATTTTAATTAGAAATGGAGCAGTTGGAGTTGCAGTTGCAGAATTATTCCATTTTCAGAAGAGAAAAAAGAAAGAAAAAACTTTATGGATCTGATCTGACCTTTTAAATCTTCAGGGAAGAGGAAAGAGAAAAATTGGCATTGTGATGAAGAGAGAGATGAGGGCAGAGGGATGCATTTGGGGCTGAAAAATGCGATCCAAAATGGAAATAAACAAATCACATTGGCTGTTGGAATGTCCACCATCCACATGATGATACTCATACTGTTCCCCCTTTTTCAATTCATCGCCCTGTACTGTAAAGTTATGCCATCTCCGCTGAAAATCGACGACAAGATTTGAAGTCAATATTCAAACAGAAACAGAATTATCAGAGCAGCCGATTTCAAATTCAGGGGAATCTCCTTTGTTTACAACTTGA

mRNA sequence

ATGGGTATGGAAGGGAAGAGGAAAGAGAAAAATTGGCATTGTGATGAAGAGAGAGATGAGGGCAGAGGGATGCATTTGGGGCTGAAAAATGCGATCCAAAATGGAAATAAACAAATCACATTGGCTGTTGGAATGTCCACCATCCACATGATGATACTCATACTGTTCCCCCTTTTTCAATTCATCGCCCTGTACTGTAAAGTTATGCCATCTCCGCTGAAAATCGACGACAAGATTTGAAGTCAATATTCAAACAGAAACAGAATTATCAGAGCAGCCGATTTCAAATTCAGGGGAATCTCCTTTGTTTACAACTTGA

Coding sequence (CDS)

ATGGGTATGGAAGGGAAGAGGAAAGAGAAAAATTGGCATTGTGATGAAGAGAGAGATGAGGGCAGAGGGATGCATTTGGGGCTGAAAAATGCGATCCAAAATGGAAATAAACAAATCACATTGGCTGTTGGAATGTCCACCATCCACATGATGATACTCATACTGTTCCCCCTTTTTCAATTCATCGCCCTGTACTGTAAAGTTATGCCATCTCCGCTGAAAATCGACGACAAGATTTGAAGTCAATATTCAAACAGAAACAGAATTATCAGAGCAGCCGATTTCAAATTCAGGGGAATCTCCTTTGTTTACAACTTGA

Protein sequence

MGMEGKRKEKNWHCDEERDEGRGMHLGLKNAIQNGNKQITLAVGMSTIHMMILILFPLFQFIALYCKVMPSPLKIDDKI*SQYSNRNRIIRAADFKFRGISFVYNLX
Homology
[Close]
BLAST of Chy7G132430.1 vs. ExPASy TrEMBL
Match: A0A0A0L4N5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664350 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.4e-34
Identity = 76/79 (96.20%), Postives = 76/79 (96.20%), Query Frame = 0 

Query: 1  MGMEGKRKEKNWHCDEERDEGRGMHLGLKNAIQNGNKQITLAVGMSTIHMMILILFPLFQ 60
          MGMEGKRKEKNW CDEERDEGRG HL LKNAIQNGNKQITLAVGMSTIHMMILILFPLFQ
Sbjct: 1  MGMEGKRKEKNWQCDEERDEGRGKHLVLKNAIQNGNKQITLAVGMSTIHMMILILFPLFQ 60

Query: 61 FIALYCKVMPSPLKIDDKI 80
          FIALYCKVMPSPLKIDDKI
Sbjct: 61 FIALYCKVMPSPLKIDDKI 79

[Close]
BLAST of Chy7G132430.1 vs. NCBI nr
Match: KGN55527.1 (hypothetical protein Csa_012641 [Cucumis sativus])

HSP 1 Score: 152 bits (383), Expect = 2.67e-45
Identity = 76/79 (96.20%), Postives = 76/79 (96.20%), Query Frame = 0 

Query: 1  MGMEGKRKEKNWHCDEERDEGRGMHLGLKNAIQNGNKQITLAVGMSTIHMMILILFPLFQ 60
          MGMEGKRKEKNW CDEERDEGRG HL LKNAIQNGNKQITLAVGMSTIHMMILILFPLFQ
Sbjct: 1  MGMEGKRKEKNWQCDEERDEGRGKHLVLKNAIQNGNKQITLAVGMSTIHMMILILFPLFQ 60

Query: 61 FIALYCKVMPSPLKIDDKI 79
          FIALYCKVMPSPLKIDDKI
Sbjct: 61 FIALYCKVMPSPLKIDDKI 79

The following BLAST results are available for this feature:
BLAST of Chy7G132430.1 vs.
Match NameE-valueIdentityDescription
BLAST of Chy7G132430.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4N54.4e-3496.20Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664350 PE=4 SV=1[more]
BLAST of Chy7G132430.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55527.12.67e-4596.20hypothetical protein Csa_012641 [Cucumis sativus][more]
BLAST of Chy7G132430.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Chy7G132430Chy7G132430gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy7G132430.1.exon2Chy7G132430.1.exon2exon
Chy7G132430.1.exon1Chy7G132430.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy7G132430.1.cds2Chy7G132430.1.cds2CDS
Chy7G132430.1.cds1Chy7G132430.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Chy7G132430.1Chy7G132430.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane