Chy6G105950.1 (mRNA) Cucumber (hystrix) v1

Overview
NameChy6G105950.1
TypemRNA
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionHomeobox leucine zipper family protein
LocationchrH06: 470447 .. 471218 (+)
Sequence length690
RNA-Seq ExpressionChy6G105950.1
SyntenyChy6G105950.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAAATGAAGATGCTGAATATTCTCCCCCAGCATCCATGGCAGAGGCTTTTGCCATGAGAAAGAAGAGTATGAACAGAAGAAGGTTTAGCGAAGAACAAATCAAATCACTCGAGTCTATTTTCGAGTCTGAGTCTAGGCTTGAGCCCAGAAAGAAATTGCAGCTGGCGGGAGAGCTGGGTTTGCATCCACGCCAGGTTGCAATATGGTTTCAGAACAAGAGAGCTAGATGGAAGTCAAAGCAACTTGAACGAGACTACAGTGTTTTACGAGCTAATTACAATACTCTAGCTTCCCGGTTTGAAGCTCTTAAGAAGGAAAAACAAGCTTTGACTATGCAGGTATGTGTTCTTTATTTCTCTAGGAAAAGACCCGCTGTTTCTTGAATTTTGCTAATCACTGTTGTTTCTTTTATTTGGGCAGTTGCAGAAGCTAAATAATCTACAGCGGTCCATGGAGGAAACTGAGAGCTGCAGGGGAGTTCTCTCCATAGAAACCATTGACGGCAAGTCTGAAAATGACCACAGAACTAAGTACGAGTCTGAAGTAAAACCTTGTGTGTCAGCTGAAGAGAAATCAGAACATGAATTAGAGGTTCTTTCCAACTACGGTAGTGGCGTAAAGGAAGCCTATATTGGATTAGAGGATCCCCAGCTCAGGGAATCTTCTCAAGGTTCCCTGATATCAACACCAAATTGGAGTAATCTAGACTCTGAAGGTCTTTTCAGTCAGTCTAATACCAATGGCCAGTGGTGGGACTTCTGGTCGTGA

mRNA sequence

ATGCTAAATGAAGATGCTGAATATTCTCCCCCAGCATCCATGGCAGAGGCTTTTGCCATGAGAAAGAAGAGTATGAACAGAAGAAGGTTTAGCGAAGAACAAATCAAATCACTCGAGTCTATTTTCGAGTCTGAGTCTAGGCTTGAGCCCAGAAAGAAATTGCAGCTGGCGGGAGAGCTGGGTTTGCATCCACGCCAGGTTGCAATATGGTTTCAGAACAAGAGAGCTAGATGGAAGTCAAAGCAACTTGAACGAGACTACAGTGTTTTACGAGCTAATTACAATACTCTAGCTTCCCGGTTTGAAGCTCTTAAGAAGGAAAAACAAGCTTTGACTATGCAGTTGCAGAAGCTAAATAATCTACAGCGGTCCATGGAGGAAACTGAGAGCTGCAGGGGAGTTCTCTCCATAGAAACCATTGACGGCAAGTCTGAAAATGACCACAGAACTAAGTACGAGTCTGAAGTAAAACCTTGTGTGTCAGCTGAAGAGAAATCAGAACATGAATTAGAGGTTCTTTCCAACTACGGTAGTGGCGTAAAGGAAGCCTATATTGGATTAGAGGATCCCCAGCTCAGGGAATCTTCTCAAGGTTCCCTGATATCAACACCAAATTGGAGTAATCTAGACTCTGAAGGTCTTTTCAGTCAGTCTAATACCAATGGCCAGTGGTGGGACTTCTGGTCGTGA

Coding sequence (CDS)

ATGCTAAATGAAGATGCTGAATATTCTCCCCCAGCATCCATGGCAGAGGCTTTTGCCATGAGAAAGAAGAGTATGAACAGAAGAAGGTTTAGCGAAGAACAAATCAAATCACTCGAGTCTATTTTCGAGTCTGAGTCTAGGCTTGAGCCCAGAAAGAAATTGCAGCTGGCGGGAGAGCTGGGTTTGCATCCACGCCAGGTTGCAATATGGTTTCAGAACAAGAGAGCTAGATGGAAGTCAAAGCAACTTGAACGAGACTACAGTGTTTTACGAGCTAATTACAATACTCTAGCTTCCCGGTTTGAAGCTCTTAAGAAGGAAAAACAAGCTTTGACTATGCAGTTGCAGAAGCTAAATAATCTACAGCGGTCCATGGAGGAAACTGAGAGCTGCAGGGGAGTTCTCTCCATAGAAACCATTGACGGCAAGTCTGAAAATGACCACAGAACTAAGTACGAGTCTGAAGTAAAACCTTGTGTGTCAGCTGAAGAGAAATCAGAACATGAATTAGAGGTTCTTTCCAACTACGGTAGTGGCGTAAAGGAAGCCTATATTGGATTAGAGGATCCCCAGCTCAGGGAATCTTCTCAAGGTTCCCTGATATCAACACCAAATTGGAGTAATCTAGACTCTGAAGGTCTTTTCAGTCAGTCTAATACCAATGGCCAGTGGTGGGACTTCTGGTCGTGA

Protein sequence

MLNEDAEYSPPASMAEAFAMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGELGLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLASRFEALKKEKQALTMQLQKLNNLQRSMEETESCRGVLSIETIDGKSENDHRTKYESEVKPCVSAEEKSEHELEVLSNYGSGVKEAYIGLEDPQLRESSQGSLISTPNWSNLDSEGLFSQSNTNGQWWDFWS*
Homology
[Close]
BLAST of Chy6G105950.1 vs. ExPASy Swiss-Prot
Match: P46897 (Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana OX=3702 GN=ATHB-7 PE=1 SV=2)

HSP 1 Score: 179.1 bits (453), Expect = 5.7e-44
Identity = 117/258 (45.35%), Postives = 156/258 (60.47%), Query Frame = 0 

Query: 2   LNEDAEYSPPASMAEAFAMRKK-------SMNRRRFSEEQIKSLESIFESESRLEPRKKL 61
           + E  EYSP    AE F   KK         N+RRFS+EQIKSLE +FESE+RLEPRKK+
Sbjct: 1   MTEGGEYSPAMMSAEPFLTMKKMKKSNHNKNNQRRFSDEQIKSLEMMFESETRLEPRKKV 60

Query: 62  QLAGELGLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLASRFEALKKEKQALTMQ 121
           QLA ELGL PRQVAIWFQNKRARWKSKQLE +Y++LR NY+ LAS+FE+LKKEKQAL  +
Sbjct: 61  QLARELGLQPRQVAIWFQNKRARWKSKQLETEYNILRQNYDNLASQFESLKKEKQALVSE 120

Query: 122 LQKLNNL--QRSMEETESCRG---VLSIETIDGKSEN-DHRTKYESEVKPCVSAEEK--- 181
           LQ+L     +++ EE   C G   V+++ +   +SEN ++R +   EV+P +  ++    
Sbjct: 121 LQRLKEATQKKTQEEERQCSGDQAVVALSSTHHESENEENRRRKPEEVRPEMEMKDDKGH 180

Query: 182 -----SEHELEVLSN-YGSGVKEAYIG--LEDP----QLRESSQGSLISTPNWSNL--DS 230
                  H+ E   N Y + +K  Y G   E+P     + E +   L S+ +W     D+
Sbjct: 181 HGVMCDHHDYEDDDNGYSNNIKREYFGGFEEEPDHLMNIVEPADSCLTSSDDWRGFKSDT 240

[Close]
BLAST of Chy6G105950.1 vs. ExPASy Swiss-Prot
Match: Q9M276 (Homeobox-leucine zipper protein ATHB-12 OS=Arabidopsis thaliana OX=3702 GN=ATHB-12 PE=1 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 9.7e-44
Identity = 112/227 (49.34%), Postives = 144/227 (63.44%), Query Frame = 0 

Query: 22  KKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGELGLHPRQVAIWFQNKRARWKSK 81
           KKS N++RFSEEQIKSLE IFESE+RLEPRKK+Q+A ELGL PRQVAIWFQNKRARWK+K
Sbjct: 26  KKSNNQKRFSEEQIKSLELIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWKTK 85

Query: 82  QLERDYSVLRANYNTLASRFEALKKEKQALTMQLQKLN-NLQRSMEET--ESC--RGVL- 141
           QLE++Y+ LRANYN LAS+FE +KKEKQ+L  +LQ+LN  +QR  EE   E C  +G+  
Sbjct: 86  QLEKEYNTLRANYNNLASQFEIMKKEKQSLVSELQRLNEEMQRPKEEKHHECCGDQGLAL 145

Query: 142 --SIETIDGKSENDHRTKYESEVKPCVSAEEKSEHELEVLSN---YGSGVKEAYIGLEDP 201
             S E+ +GKSE + R    S                 VL N   Y + +K  Y G E+ 
Sbjct: 146 SSSTESHNGKSEPEGRLDQGS-----------------VLCNDGDYNNNIKTEYFGFEEE 205

Query: 202 Q-------LRESSQGSLISTPNWSNLDSEGLFSQSNTN-GQWWDFWS 230
                   + ++    L S+ NW   +S+ L  QS++N   WW+FWS
Sbjct: 206 TDHELMNIVEKADDSCLTSSENWGGFNSDSLLDQSSSNYPNWWEFWS 235

[Close]
BLAST of Chy6G105950.1 vs. ExPASy Swiss-Prot
Match: Q9XH35 (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. indica OX=39946 GN=HOX6 PE=2 SV=2)

HSP 1 Score: 129.8 bits (325), Expect = 4.0e-29
Identity = 66/92 (71.74%), Postives = 80/92 (86.96%), Query Frame = 0 

Query: 27  RRRFSEEQIKSLESIFESESRLEPRKKLQLAGELGLHPRQVAIWFQNKRARWKSKQLERD 86
           ++RFSEEQIKSLES+F ++++LEPR+KLQLA ELGL PRQVAIWFQNKRARWKSKQLER+
Sbjct: 31  KKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLERE 90

Query: 87  YSVLRANYNTLASRFEALKKEKQALTMQLQKL 119
           YS LR +Y+ L   +E+LKKEK AL  QL+KL
Sbjct: 91  YSALRDDYDALLCSYESLKKEKLALIKQLEKL 122

[Close]
BLAST of Chy6G105950.1 vs. ExPASy Swiss-Prot
Match: Q651Z5 (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX6 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.0e-29
Identity = 66/92 (71.74%), Postives = 80/92 (86.96%), Query Frame = 0 

Query: 27  RRRFSEEQIKSLESIFESESRLEPRKKLQLAGELGLHPRQVAIWFQNKRARWKSKQLERD 86
           ++RFSEEQIKSLES+F ++++LEPR+KLQLA ELGL PRQVAIWFQNKRARWKSKQLER+
Sbjct: 31  KKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLERE 90

Query: 87  YSVLRANYNTLASRFEALKKEKQALTMQLQKL 119
           YS LR +Y+ L   +E+LKKEK AL  QL+KL
Sbjct: 91  YSALRDDYDALLCSYESLKKEKLALIKQLEKL 122

[Close]
BLAST of Chy6G105950.1 vs. ExPASy Swiss-Prot
Match: Q01IK0 (Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. indica OX=39946 GN=HOX22 PE=2 SV=2)

HSP 1 Score: 122.9 bits (307), Expect = 4.8e-27
Identity = 65/102 (63.73%), Postives = 82/102 (80.39%), Query Frame = 0 

Query: 27  RRRFSEEQIKSLESIFES-ESRLEPRKKLQLAGELGLHPRQVAIWFQNKRARWKSKQLER 86
           +RRF+EEQI+SLES+F +  ++LEPR+K +LA ELGL PRQVAIWFQNKRARW+SKQLE 
Sbjct: 74  KRRFTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEH 133

Query: 87  DYSVLRANYNTLASRFEALKKEKQALTMQLQKLNNLQRSMEE 128
           DY+ LR+ Y+ L SR E+LK+EK ALT+QL +L    R  EE
Sbjct: 134 DYAALRSKYDALHSRVESLKQEKLALTVQLHELRERLREREE 175

[Close]
BLAST of Chy6G105950.1 vs. ExPASy TrEMBL
Match: A0A0A0L317 (Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G119240 PE=4 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 5.6e-119
Identity = 227/230 (98.70%), Postives = 228/230 (99.13%), Query Frame = 0 

Query: 1   MLNEDAEYSPPASMAEAFAMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGEL 60
           MLNEDAEYSPPASMAEAFAMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGEL
Sbjct: 1   MLNEDAEYSPPASMAEAFAMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGEL 60

Query: 61  GLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLASRFEALKKEKQALTMQLQKLNN 120
           GLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLASRFEALKKEKQALTMQLQKLNN
Sbjct: 61  GLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLASRFEALKKEKQALTMQLQKLNN 120

Query: 121 L-QRSMEETESCRGVLSIETIDGKSENDHRTKYESEVKPCVSAEEKSEHELEVLSNYGSG 180
           L QRSMEETESCRGVLSIETIDGKSE DHRTKYESEVKPC+SAEEKSEHELEVLSNYGSG
Sbjct: 121 LVQRSMEETESCRGVLSIETIDGKSEIDHRTKYESEVKPCLSAEEKSEHELEVLSNYGSG 180

Query: 181 VKEAYIGLEDPQLRESSQGSLISTPNWSNLDSEGLFSQSNTNGQWWDFWS 230
           VKEAYIGLEDPQLRESSQGSLISTPNWSNLDSEGLFSQSNTNGQWWDFWS
Sbjct: 181 VKEAYIGLEDPQLRESSQGSLISTPNWSNLDSEGLFSQSNTNGQWWDFWS 230

[Close]
BLAST of Chy6G105950.1 vs. ExPASy TrEMBL
Match: A0A6J1E8U3 (homeobox-leucine zipper protein ATHB-7 OS=Cucurbita moschata OX=3662 GN=LOC111431912 PE=4 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 2.8e-110
Identity = 211/231 (91.34%), Postives = 220/231 (95.24%), Query Frame = 0 

Query: 1   MLN-EDAEYSPPASMAEAFAMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE 60
           MLN +DAEYSPP SMAEAF MRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE
Sbjct: 1   MLNDDDAEYSPPESMAEAFGMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE 60

Query: 61  LGLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLASRFEALKKEKQALTMQLQKLN 120
           LGLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTL SRFEALKKEKQAL +QLQKLN
Sbjct: 61  LGLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLVSRFEALKKEKQALAIQLQKLN 120

Query: 121 NL-QRSMEETESCRGVLSIETIDGKSENDHRTKYESEVKPCVSAEEKSEHELEVLSNYGS 180
           +L QRSMEETESCRG LS+ETIDGKSEN HRTKYESEVKPCVSAEEKSEHELEVLSNYGS
Sbjct: 121 DLVQRSMEETESCRGGLSLETIDGKSENGHRTKYESEVKPCVSAEEKSEHELEVLSNYGS 180

Query: 181 GVKEAYIGLEDPQLRESSQGSLISTPNWSNLDSEGLFSQSNTNGQWWDFWS 230
           G KEAY+GL++PQ RE +QGSLISTPNWSNL+SEGLFSQSNTNGQWWDFWS
Sbjct: 181 GTKEAYLGLDEPQFREPAQGSLISTPNWSNLESEGLFSQSNTNGQWWDFWS 231

[Close]
BLAST of Chy6G105950.1 vs. ExPASy TrEMBL
Match: A0A6J1IQF4 (homeobox-leucine zipper protein ATHB-7 OS=Cucurbita maxima OX=3661 GN=LOC111479074 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 1.1e-109
Identity = 210/231 (90.91%), Postives = 219/231 (94.81%), Query Frame = 0 

Query: 1   MLN-EDAEYSPPASMAEAFAMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE 60
           MLN +DAEYSPP SMAEAF MRKK MNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE
Sbjct: 1   MLNDDDAEYSPPESMAEAFGMRKKGMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE 60

Query: 61  LGLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLASRFEALKKEKQALTMQLQKLN 120
           LGLHPRQVAIWFQNKRARWKSKQLE+DYSVLRANYNTL SRFEALKKEKQAL +QLQKLN
Sbjct: 61  LGLHPRQVAIWFQNKRARWKSKQLEQDYSVLRANYNTLVSRFEALKKEKQALAIQLQKLN 120

Query: 121 NL-QRSMEETESCRGVLSIETIDGKSENDHRTKYESEVKPCVSAEEKSEHELEVLSNYGS 180
           +L QRSMEETESCRG LS+ETIDGKSEN HRTKYESEVKPCVSAEEKSEHELEVLSNYGS
Sbjct: 121 DLVQRSMEETESCRGGLSLETIDGKSENGHRTKYESEVKPCVSAEEKSEHELEVLSNYGS 180

Query: 181 GVKEAYIGLEDPQLRESSQGSLISTPNWSNLDSEGLFSQSNTNGQWWDFWS 230
           G KEAY+GLE+PQ RE +QGSLISTPNWSNL+SEGLFSQSNTNGQWWDFWS
Sbjct: 181 GTKEAYLGLEEPQFREPAQGSLISTPNWSNLESEGLFSQSNTNGQWWDFWS 231

[Close]
BLAST of Chy6G105950.1 vs. ExPASy TrEMBL
Match: A0A5A7U0W8 (Homeobox-leucine zipper protein ATHB-7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00710 PE=4 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 1.5e-108
Identity = 215/230 (93.48%), Postives = 219/230 (95.22%), Query Frame = 0 

Query: 1   MLNEDAEYSPPASMAEAFAMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGEL 60
           MLNEDAEYSP ASMAEAFAMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGEL
Sbjct: 1   MLNEDAEYSPQASMAEAFAMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGEL 60

Query: 61  GLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLASRFEALKKEKQALTMQLQKLNN 120
           GLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLASRFEALKKEKQAL+MQLQKLNN
Sbjct: 61  GLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLASRFEALKKEKQALSMQLQKLNN 120

Query: 121 L-QRSMEETESCRGVLSIETIDGKSENDHRTKYESEVKPCVSAEEKSEHELEVLSNYGSG 180
           L QRSMEETESCRGVLS+ETIDG SEND+RTKYESE KPCVSAEEKSEHELEVLS   SG
Sbjct: 121 LIQRSMEETESCRGVLSVETIDGTSENDNRTKYESEAKPCVSAEEKSEHELEVLS---SG 180

Query: 181 VKEAYIGLEDPQLRESSQGSLISTPNWSNLDSEGLFSQSNTNGQWWDFWS 230
           VKEAYIGLEDPQLRE    SLISTPNWSNLDSEGLFSQSNTNGQWW+FWS
Sbjct: 181 VKEAYIGLEDPQLREP---SLISTPNWSNLDSEGLFSQSNTNGQWWNFWS 224

[Close]
BLAST of Chy6G105950.1 vs. ExPASy TrEMBL
Match: A0A1S3AUY7 (homeobox-leucine zipper protein ATHB-7 OS=Cucumis melo OX=3656 GN=LOC103483152 PE=4 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 1.5e-108
Identity = 215/230 (93.48%), Postives = 219/230 (95.22%), Query Frame = 0 

Query: 1   MLNEDAEYSPPASMAEAFAMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGEL 60
           MLNEDAEYSP ASMAEAFAMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGEL
Sbjct: 1   MLNEDAEYSPQASMAEAFAMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGEL 60

Query: 61  GLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLASRFEALKKEKQALTMQLQKLNN 120
           GLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLASRFEALKKEKQAL+MQLQKLNN
Sbjct: 61  GLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLASRFEALKKEKQALSMQLQKLNN 120

Query: 121 L-QRSMEETESCRGVLSIETIDGKSENDHRTKYESEVKPCVSAEEKSEHELEVLSNYGSG 180
           L QRSMEETESCRGVLS+ETIDG SEND+RTKYESE KPCVSAEEKSEHELEVLS   SG
Sbjct: 121 LIQRSMEETESCRGVLSVETIDGTSENDNRTKYESEAKPCVSAEEKSEHELEVLS---SG 180

Query: 181 VKEAYIGLEDPQLRESSQGSLISTPNWSNLDSEGLFSQSNTNGQWWDFWS 230
           VKEAYIGLEDPQLRE    SLISTPNWSNLDSEGLFSQSNTNGQWW+FWS
Sbjct: 181 VKEAYIGLEDPQLREP---SLISTPNWSNLDSEGLFSQSNTNGQWWNFWS 224

[Close]
BLAST of Chy6G105950.1 vs. NCBI nr
Match: XP_004133792.1 (homeobox-leucine zipper protein ATHB-12 [Cucumis sativus] >KGN56390.1 hypothetical protein Csa_010007 [Cucumis sativus])

HSP 1 Score: 435 bits (1118), Expect = 2.44e-153
Identity = 227/230 (98.70%), Postives = 228/230 (99.13%), Query Frame = 0 

Query: 1   MLNEDAEYSPPASMAEAFAMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGEL 60
           MLNEDAEYSPPASMAEAFAMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGEL
Sbjct: 1   MLNEDAEYSPPASMAEAFAMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGEL 60

Query: 61  GLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLASRFEALKKEKQALTMQLQKLNN 120
           GLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLASRFEALKKEKQALTMQLQKLNN
Sbjct: 61  GLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLASRFEALKKEKQALTMQLQKLNN 120

Query: 121 L-QRSMEETESCRGVLSIETIDGKSENDHRTKYESEVKPCVSAEEKSEHELEVLSNYGSG 180
           L QRSMEETESCRGVLSIETIDGKSE DHRTKYESEVKPC+SAEEKSEHELEVLSNYGSG
Sbjct: 121 LVQRSMEETESCRGVLSIETIDGKSEIDHRTKYESEVKPCLSAEEKSEHELEVLSNYGSG 180

Query: 181 VKEAYIGLEDPQLRESSQGSLISTPNWSNLDSEGLFSQSNTNGQWWDFWS 229
           VKEAYIGLEDPQLRESSQGSLISTPNWSNLDSEGLFSQSNTNGQWWDFWS
Sbjct: 181 VKEAYIGLEDPQLRESSQGSLISTPNWSNLDSEGLFSQSNTNGQWWDFWS 230

[Close]
BLAST of Chy6G105950.1 vs. NCBI nr
Match: XP_038874805.1 (homeobox-leucine zipper protein ATHB-7 [Benincasa hispida])

HSP 1 Score: 422 bits (1084), Expect = 3.72e-148
Identity = 218/230 (94.78%), Postives = 224/230 (97.39%), Query Frame = 0 

Query: 1   MLNEDAEYSPPASMAEAFAMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGEL 60
           MLN+DAEYSPPASMAEA AMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGEL
Sbjct: 1   MLNDDAEYSPPASMAEALAMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGEL 60

Query: 61  GLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLASRFEALKKEKQALTMQLQKLNN 120
           GLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLASRFEALKKEKQALT+QLQKLNN
Sbjct: 61  GLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLASRFEALKKEKQALTIQLQKLNN 120

Query: 121 L-QRSMEETESCRGVLSIETIDGKSENDHRTKYESEVKPCVSAEEKSEHELEVLSNYGSG 180
           L QRSMEETESCRG LS+ETIDGKSEN HRTKYESEVKPCVSAEEKS HELEVLSNYGSG
Sbjct: 121 LVQRSMEETESCRGGLSVETIDGKSENGHRTKYESEVKPCVSAEEKSGHELEVLSNYGSG 180

Query: 181 VKEAYIGLEDPQLRESSQGSLISTPNWSNLDSEGLFSQSNTNGQWWDFWS 229
           +KEAY+GLEDPQLRE +QGSLISTPNWSNLDSEGLFSQSNTNGQWWDFWS
Sbjct: 181 IKEAYLGLEDPQLREPTQGSLISTPNWSNLDSEGLFSQSNTNGQWWDFWS 230

[Close]
BLAST of Chy6G105950.1 vs. NCBI nr
Match: XP_023527384.1 (homeobox-leucine zipper protein ATHB-12 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 406 bits (1043), Expect = 6.84e-142
Identity = 211/231 (91.34%), Postives = 220/231 (95.24%), Query Frame = 0 

Query: 1   MLNED-AEYSPPASMAEAFAMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE 60
           MLN+D AEYSPP SMAEAF MRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE
Sbjct: 1   MLNDDDAEYSPPESMAEAFGMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE 60

Query: 61  LGLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLASRFEALKKEKQALTMQLQKLN 120
           LGLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTL SRFEALKKEKQAL +QLQKLN
Sbjct: 61  LGLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLVSRFEALKKEKQALAIQLQKLN 120

Query: 121 NL-QRSMEETESCRGVLSIETIDGKSENDHRTKYESEVKPCVSAEEKSEHELEVLSNYGS 180
           +L QRSMEETESCRG LS+ETIDGKSEN HRTKYESEVKPCVSAEEKSEHELEVLSNYGS
Sbjct: 121 DLVQRSMEETESCRGGLSLETIDGKSENGHRTKYESEVKPCVSAEEKSEHELEVLSNYGS 180

Query: 181 GVKEAYIGLEDPQLRESSQGSLISTPNWSNLDSEGLFSQSNTNGQWWDFWS 229
           G KEAY+GL++PQ RE +QGSLISTPNWSNL+SEGLFSQSNTNGQWWDFWS
Sbjct: 181 GTKEAYLGLDEPQFREPTQGSLISTPNWSNLESEGLFSQSNTNGQWWDFWS 231

[Close]
BLAST of Chy6G105950.1 vs. NCBI nr
Match: XP_022924402.1 (homeobox-leucine zipper protein ATHB-7 [Cucurbita moschata] >KAG6582693.1 Homeobox-leucine zipper protein ATHB-7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 406 bits (1043), Expect = 6.84e-142
Identity = 211/231 (91.34%), Postives = 220/231 (95.24%), Query Frame = 0 

Query: 1   MLNED-AEYSPPASMAEAFAMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE 60
           MLN+D AEYSPP SMAEAF MRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE
Sbjct: 1   MLNDDDAEYSPPESMAEAFGMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE 60

Query: 61  LGLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLASRFEALKKEKQALTMQLQKLN 120
           LGLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTL SRFEALKKEKQAL +QLQKLN
Sbjct: 61  LGLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLVSRFEALKKEKQALAIQLQKLN 120

Query: 121 NL-QRSMEETESCRGVLSIETIDGKSENDHRTKYESEVKPCVSAEEKSEHELEVLSNYGS 180
           +L QRSMEETESCRG LS+ETIDGKSEN HRTKYESEVKPCVSAEEKSEHELEVLSNYGS
Sbjct: 121 DLVQRSMEETESCRGGLSLETIDGKSENGHRTKYESEVKPCVSAEEKSEHELEVLSNYGS 180

Query: 181 GVKEAYIGLEDPQLRESSQGSLISTPNWSNLDSEGLFSQSNTNGQWWDFWS 229
           G KEAY+GL++PQ RE +QGSLISTPNWSNL+SEGLFSQSNTNGQWWDFWS
Sbjct: 181 GTKEAYLGLDEPQFREPAQGSLISTPNWSNLESEGLFSQSNTNGQWWDFWS 231

[Close]
BLAST of Chy6G105950.1 vs. NCBI nr
Match: XP_022979311.1 (homeobox-leucine zipper protein ATHB-7 [Cucurbita maxima])

HSP 1 Score: 404 bits (1038), Expect = 3.96e-141
Identity = 210/231 (90.91%), Postives = 219/231 (94.81%), Query Frame = 0 

Query: 1   MLNED-AEYSPPASMAEAFAMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE 60
           MLN+D AEYSPP SMAEAF MRKK MNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE
Sbjct: 1   MLNDDDAEYSPPESMAEAFGMRKKGMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE 60

Query: 61  LGLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLASRFEALKKEKQALTMQLQKLN 120
           LGLHPRQVAIWFQNKRARWKSKQLE+DYSVLRANYNTL SRFEALKKEKQAL +QLQKLN
Sbjct: 61  LGLHPRQVAIWFQNKRARWKSKQLEQDYSVLRANYNTLVSRFEALKKEKQALAIQLQKLN 120

Query: 121 NL-QRSMEETESCRGVLSIETIDGKSENDHRTKYESEVKPCVSAEEKSEHELEVLSNYGS 180
           +L QRSMEETESCRG LS+ETIDGKSEN HRTKYESEVKPCVSAEEKSEHELEVLSNYGS
Sbjct: 121 DLVQRSMEETESCRGGLSLETIDGKSENGHRTKYESEVKPCVSAEEKSEHELEVLSNYGS 180

Query: 181 GVKEAYIGLEDPQLRESSQGSLISTPNWSNLDSEGLFSQSNTNGQWWDFWS 229
           G KEAY+GLE+PQ RE +QGSLISTPNWSNL+SEGLFSQSNTNGQWWDFWS
Sbjct: 181 GTKEAYLGLEEPQFREPAQGSLISTPNWSNLESEGLFSQSNTNGQWWDFWS 231

[Close]
BLAST of Chy6G105950.1 vs. TAIR 10
Match: AT2G46680.1 (homeobox 7 )

HSP 1 Score: 179.1 bits (453), Expect = 4.0e-45
Identity = 117/258 (45.35%), Postives = 156/258 (60.47%), Query Frame = 0 

Query: 2   LNEDAEYSPPASMAEAFAMRKK-------SMNRRRFSEEQIKSLESIFESESRLEPRKKL 61
           + E  EYSP    AE F   KK         N+RRFS+EQIKSLE +FESE+RLEPRKK+
Sbjct: 1   MTEGGEYSPAMMSAEPFLTMKKMKKSNHNKNNQRRFSDEQIKSLEMMFESETRLEPRKKV 60

Query: 62  QLAGELGLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLASRFEALKKEKQALTMQ 121
           QLA ELGL PRQVAIWFQNKRARWKSKQLE +Y++LR NY+ LAS+FE+LKKEKQAL  +
Sbjct: 61  QLARELGLQPRQVAIWFQNKRARWKSKQLETEYNILRQNYDNLASQFESLKKEKQALVSE 120

Query: 122 LQKLNNL--QRSMEETESCRG---VLSIETIDGKSEN-DHRTKYESEVKPCVSAEEK--- 181
           LQ+L     +++ EE   C G   V+++ +   +SEN ++R +   EV+P +  ++    
Sbjct: 121 LQRLKEATQKKTQEEERQCSGDQAVVALSSTHHESENEENRRRKPEEVRPEMEMKDDKGH 180

Query: 182 -----SEHELEVLSN-YGSGVKEAYIG--LEDP----QLRESSQGSLISTPNWSNL--DS 230
                  H+ E   N Y + +K  Y G   E+P     + E +   L S+ +W     D+
Sbjct: 181 HGVMCDHHDYEDDDNGYSNNIKREYFGGFEEEPDHLMNIVEPADSCLTSSDDWRGFKSDT 240

[Close]
BLAST of Chy6G105950.1 vs. TAIR 10
Match: AT3G61890.1 (homeobox 12 )

HSP 1 Score: 178.3 bits (451), Expect = 6.9e-45
Identity = 112/227 (49.34%), Postives = 144/227 (63.44%), Query Frame = 0 

Query: 22  KKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGELGLHPRQVAIWFQNKRARWKSK 81
           KKS N++RFSEEQIKSLE IFESE+RLEPRKK+Q+A ELGL PRQVAIWFQNKRARWK+K
Sbjct: 26  KKSNNQKRFSEEQIKSLELIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWKTK 85

Query: 82  QLERDYSVLRANYNTLASRFEALKKEKQALTMQLQKLN-NLQRSMEET--ESC--RGVL- 141
           QLE++Y+ LRANYN LAS+FE +KKEKQ+L  +LQ+LN  +QR  EE   E C  +G+  
Sbjct: 86  QLEKEYNTLRANYNNLASQFEIMKKEKQSLVSELQRLNEEMQRPKEEKHHECCGDQGLAL 145

Query: 142 --SIETIDGKSENDHRTKYESEVKPCVSAEEKSEHELEVLSN---YGSGVKEAYIGLEDP 201
             S E+ +GKSE + R    S                 VL N   Y + +K  Y G E+ 
Sbjct: 146 SSSTESHNGKSEPEGRLDQGS-----------------VLCNDGDYNNNIKTEYFGFEEE 205

Query: 202 Q-------LRESSQGSLISTPNWSNLDSEGLFSQSNTN-GQWWDFWS 230
                   + ++    L S+ NW   +S+ L  QS++N   WW+FWS
Sbjct: 206 TDHELMNIVEKADDSCLTSSENWGGFNSDSLLDQSSSNYPNWWEFWS 235

[Close]
BLAST of Chy6G105950.1 vs. TAIR 10
Match: AT2G46680.2 (homeobox 7 )

HSP 1 Score: 176.4 bits (446), Expect = 2.6e-44
Identity = 115/256 (44.92%), Postives = 153/256 (59.77%), Query Frame = 0 

Query: 2   LNEDAEYSPPASMAEAFAMRKK-------SMNRRRFSEEQIKSLESIFESESRLEPRKKL 61
           + E  EYSP    AE F   KK         N+RRFS+EQIKSLE +FESE+RLEPRKK+
Sbjct: 1   MTEGGEYSPAMMSAEPFLTMKKMKKSNHNKNNQRRFSDEQIKSLEMMFESETRLEPRKKV 60

Query: 62  QLAGELGLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLASRFEALKKEKQALTMQ 121
           QLA ELGL PRQVAIWFQNKRARWKSKQLE +Y++LR NY+ LAS+FE+LKKEKQAL  +
Sbjct: 61  QLARELGLQPRQVAIWFQNKRARWKSKQLETEYNILRQNYDNLASQFESLKKEKQALVSE 120

Query: 122 LQKLNNLQRSMEETESCRG---VLSIETIDGKSEN-DHRTKYESEVKPCVSAEEK----- 181
             K    +++ EE   C G   V+++ +   +SEN ++R +   EV+P +  ++      
Sbjct: 121 RLKEATQKKTQEEERQCSGDQAVVALSSTHHESENEENRRRKPEEVRPEMEMKDDKGHHG 180

Query: 182 ---SEHELEVLSN-YGSGVKEAYIG--LEDP----QLRESSQGSLISTPNWSNL--DSEG 230
                H+ E   N Y + +K  Y G   E+P     + E +   L S+ +W     D+  
Sbjct: 181 VMCDHHDYEDDDNGYSNNIKREYFGGFEEEPDHLMNIVEPADSCLTSSDDWRGFKSDTTT 240

[Close]
BLAST of Chy6G105950.1 vs. TAIR 10
Match: AT2G22430.1 (homeobox protein 6 )

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-23
Identity = 58/126 (46.03%), Postives = 84/126 (66.67%), Query Frame = 0 

Query: 24  SMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGELGLHPRQVAIWFQNKRARWKSKQL 83
           S  +RR S  Q+K+LE  FE E++LEP +K++LA ELGL PRQVA+WFQN+RARWK+KQL
Sbjct: 60  SEKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 119

Query: 84  ERDYSVLRANYNTLASRFEALKKEKQALTMQLQ----KLNNLQRSMEETESCRGVLSIET 143
           E+DY VL+  Y++L   F++L+++ ++L  ++     KLN      EE E+   V +   
Sbjct: 120 EKDYGVLKTQYDSLRHNFDSLRRDNESLLQEISKLKTKLNGGGGEEEEEENNAAVTTESD 179

Query: 144 IDGKSE 146
           I  K E
Sbjct: 180 ISVKEE 185

[Close]
BLAST of Chy6G105950.1 vs. TAIR 10
Match: AT4G40060.1 (homeobox protein 16 )

HSP 1 Score: 105.5 bits (262), Expect = 5.7e-23
Identity = 57/147 (38.78%), Postives = 90/147 (61.22%), Query Frame = 0 

Query: 8   YSPPASMAEAFAMRKKSM----NRRRFSEEQIKSLESIFESESRLEPRKKLQLAGELGLH 67
           Y   A++ E ++     M     +RR   +Q+K+LE  FE E++LEP +K +LA ELGL 
Sbjct: 37  YDEDATLIEEYSGNHHHMGLSEKKRRLKVDQVKALEKNFELENKLEPERKTKLAQELGLQ 96

Query: 68  PRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLASRFEALKKEKQALTMQLQKLNNLQR 127
           PRQVA+WFQN+RARWK+KQLE+DY VL+  Y++L   F++L+++  +L  ++ K+     
Sbjct: 97  PRQVAVWFQNRRARWKTKQLEKDYGVLKGQYDSLRHNFDSLRRDNDSLLQEISKIKAKVN 156

Query: 128 SMEETESCRGVLSIETIDGKSENDHRT 151
             E+  + + +    T   K E  H+T
Sbjct: 157 GEEDNNNNKAI----TEGVKEEEVHKT 179

The following BLAST results are available for this feature:
BLAST of Chy6G105950.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P468975.7e-4445.35Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana OX=3702 GN=ATHB-7... [more]
Q9M2769.7e-4449.34Homeobox-leucine zipper protein ATHB-12 OS=Arabidopsis thaliana OX=3702 GN=ATHB-... [more]
Q9XH354.0e-2971.74Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. indica OX=39946 GN=H... [more]
Q651Z54.0e-2971.74Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
Q01IK04.8e-2763.73Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. indica OX=39946 GN=... [more]
BLAST of Chy6G105950.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3175.6e-11998.70Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G119240 PE... [more]
A0A6J1E8U32.8e-11091.34homeobox-leucine zipper protein ATHB-7 OS=Cucurbita moschata OX=3662 GN=LOC11143... [more]
A0A6J1IQF41.1e-10990.91homeobox-leucine zipper protein ATHB-7 OS=Cucurbita maxima OX=3661 GN=LOC1114790... [more]
A0A5A7U0W81.5e-10893.48Homeobox-leucine zipper protein ATHB-7 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A1S3AUY71.5e-10893.48homeobox-leucine zipper protein ATHB-7 OS=Cucumis melo OX=3656 GN=LOC103483152 P... [more]
BLAST of Chy6G105950.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004133792.12.44e-15398.70homeobox-leucine zipper protein ATHB-12 [Cucumis sativus] >KGN56390.1 hypothetic... [more]
XP_038874805.13.72e-14894.78homeobox-leucine zipper protein ATHB-7 [Benincasa hispida][more]
XP_023527384.16.84e-14291.34homeobox-leucine zipper protein ATHB-12 [Cucurbita pepo subsp. pepo][more]
XP_022924402.16.84e-14291.34homeobox-leucine zipper protein ATHB-7 [Cucurbita moschata] >KAG6582693.1 Homeob... [more]
XP_022979311.13.96e-14190.91homeobox-leucine zipper protein ATHB-7 [Cucurbita maxima][more]
BLAST of Chy6G105950.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G46680.14.0e-4545.35homeobox 7 [more]
AT3G61890.16.9e-4549.34homeobox 12 [more]
AT2G46680.22.6e-4444.92homeobox 7 [more]
AT2G22430.11.1e-2346.03homeobox protein 6 [more]
AT4G40060.15.7e-2338.78homeobox protein 16 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 94..128
NoneNo IPR availableGENE3D1.10.10.60coord: 18..88
e-value: 9.3E-20
score: 72.0
NoneNo IPR availablePANTHERPTHR24326:SF122HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7coord: 13..229
NoneNo IPR availablePANTHERPTHR24326HOMEOBOX-LEUCINE ZIPPER PROTEINcoord: 13..229
IPR000047Helix-turn-helix motifPRINTSPR00031HTHREPRESSRcoord: 52..61
score: 44.27
coord: 61..77
score: 58.94
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 23..85
e-value: 1.7E-16
score: 70.8
IPR001356Homeobox domainPFAMPF00046Homeodomaincoord: 26..79
e-value: 1.8E-17
score: 62.9
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 21..81
score: 17.701887
IPR001356Homeobox domainCDDcd00086homeodomaincoord: 27..82
e-value: 4.12551E-14
score: 63.0312
IPR003106Leucine zipper, homeobox-associatedPFAMPF02183HALZcoord: 81..121
e-value: 1.1E-15
score: 57.5
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 56..79
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 12..83

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Chy6G105950Chy6G105950gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy6G105950.1.exon1Chy6G105950.1.exon1exon
Chy6G105950.1.exon2Chy6G105950.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy6G105950.1.cds1Chy6G105950.1.cds1CDS
Chy6G105950.1.cds2Chy6G105950.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Chy6G105950.1Chy6G105950.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006357 regulation of transcription by RNA polymerase II
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function GO:0043565 sequence-specific DNA binding