Chy5G104100.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy5G104100.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Arabinogalactan protein 22, putative
Location	chrH05: 17764317 .. 17764836 (-)
Sequence length	192
RNA-Seq Expression	Chy5G104100.1
Synteny	Chy5G104100.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCGTTGAAGCTCACAGCCGTTCCGATCGTCGGATTCTTGTTCTTGATTGTTCTTCAATTGGCTCACGGCCACTCCCACGATATTTCACCCGCGGCGGGTCCTTCTAACGACGGTGAGTTCCTGTATTACGATTTTGTACATGTGGTTTGTTTTCGTCTATGTGATTTGAAATTTTACAATTTAGTTCTTCCATCTAATCTCTGTGATTTGAATCTAACTCTTCAATCTAAATTCTGTACATTGAAGTGTTTATTTGAGAAAATAAGTTTGAAAATCACTTGATTTGTTCTTATTTGAAGTTTTTTAGTTTAGTTTTGTATTTTAGTTCAAATTATCTCAATCATTTCGTCTCCTGTATGTTTTTAACATTCAAAATTACAATTTTCAAAGATGATTTCATATTTATTAAAAGGTCTAATGTTTGTTAATTGTTGTTGCAGGAGCTGCAATTGACCAAGGGATTGCGTACGTTCTTCTTCTGCTTGCTCTGGCCGTTACTTACATCGTTCATTGA

mRNA sequence

ATGAGTTCGTTGAAGCTCACAGCCGTTCCGATCGTCGGATTCTTGTTCTTGATTGTTCTTCAATTGGCTCACGGCCACTCCCACGATATTTCACCCGCGGCGGGTCCTTCTAACGACGGAGCTGCAATTGACCAAGGGATTGCGTACGTTCTTCTTCTGCTTGCTCTGGCCGTTACTTACATCGTTCATTGA

Coding sequence (CDS)

ATGAGTTCGTTGAAGCTCACAGCCGTTCCGATCGTCGGATTCTTGTTCTTGATTGTTCTTCAATTGGCTCACGGCCACTCCCACGATATTTCACCCGCGGCGGGTCCTTCTAACGACGGAGCTGCAATTGACCAAGGGATTGCGTACGTTCTTCTTCTGCTTGCTCTGGCCGTTACTTACATCGTTCATTGA

Protein sequence

MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH*

Homology

[Close]

BLAST of Chy5G104100.1 vs. ExPASy Swiss-Prot
Match: Q9FK16 (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.7e-09
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY 60
          M+SLK     +  F+ + V+ L    SH  SPA  P++DG +IDQGIAYVL+++ALA+TY
Sbjct: 1  MASLKFPLEILAVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 IVH 64
           +H
Sbjct: 61 FIH 63

[Close]

BLAST of Chy5G104100.1 vs. ExPASy Swiss-Prot
Match: Q8L9T8 (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.1e-08
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 11 IVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH 64
          IV  +F I+L +AH  S   +PA  P++DG  IDQGIAYVL+L+AL +TY++H
Sbjct: 13 IVSIIFAILLPMAHAQS--AAPAPAPTSDGTTIDQGIAYVLMLVALVLTYLIH 63

[Close]

BLAST of Chy5G104100.1 vs. ExPASy Swiss-Prot
Match: O82337 (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.6e-07
Identity = 25/58 (43.10%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 6  LTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH 64
          +T   +  F+F ++L LA   S  ++PA  P++DG +IDQGIAY+L+++AL +TY++H
Sbjct: 7  VTGFALFSFVFAVILSLAGAQS--LAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of Chy5G104100.1 vs. ExPASy Swiss-Prot
Match: Q9M373 (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 6.5e-06
Identity = 22/58 (37.93%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 6  LTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH 64
          +  + +  F+F ++   A   S  ++PA  P++DG +IDQGIAY+L+++AL +TY++H
Sbjct: 7  VAVIALFAFVFAVISPFAGAQS--LAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of Chy5G104100.1 vs. ExPASy TrEMBL
Match: A0A0A0LIU0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004710 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 6.5e-25
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY 60
          MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY
Sbjct: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY 60

Query: 61 IVH 64
          IVH
Sbjct: 61 IVH 63

[Close]

BLAST of Chy5G104100.1 vs. ExPASy TrEMBL
Match: A0A5A7V7C0 (Putative Arabinogalactan protein 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00220 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.6e-23
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY 60
          MSSLKLTAVP VGFLFLI+LQLAHGHSHDISPA GPSNDGAAIDQGIAYVLLLLALA+TY
Sbjct: 1  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITY 60

Query: 61 IVH 64
          I+H
Sbjct: 61 IIH 63

[Close]

BLAST of Chy5G104100.1 vs. ExPASy TrEMBL
Match: A0A3N7G6R6 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G078801 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.7e-12
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY 60
          MSS++L A+PI+GF+FL +L+   G     SPA GP+NDG  IDQGIAYVLL+LALA+TY
Sbjct: 1  MSSMRLHALPIIGFMFLALLEFGFGQGTAPSPAEGPTNDGKTIDQGIAYVLLMLALAITY 60

Query: 61 IVH 64
          + H
Sbjct: 61 LFH 63

[Close]

BLAST of Chy5G104100.1 vs. ExPASy TrEMBL
Match: A0A067E6Q0 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g036245mg PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.3e-12
Identity = 35/63 (55.56%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY 60
          M+S++L A+P++GF+F+ +LQL +  +   SPA  PS+DG AIDQGIAY+L++LALA+TY
Sbjct: 2  MNSMRLYALPVIGFMFMAILQLGNAQNMAPSPAPAPSSDGTAIDQGIAYILMVLALAITY 61

Query: 61 IVH 64
          +VH
Sbjct: 62 LVH 64

[Close]

BLAST of Chy5G104100.1 vs. ExPASy TrEMBL
Match: V4WD40 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10010340mg PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.3e-12
Identity = 35/63 (55.56%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY 60
          M+S++L A+P++GF+F+ +LQL +  +   SPA  PS+DG AIDQGIAY+L++LALA+TY
Sbjct: 2  MNSMRLYALPVIGFMFMAILQLGNAQNMAPSPAPAPSSDGTAIDQGIAYILMVLALAITY 61

Query: 61 IVH 64
          +VH
Sbjct: 62 LVH 64

[Close]

BLAST of Chy5G104100.1 vs. NCBI nr
Match: KGN60622.1 (hypothetical protein Csa_019490 [Cucumis sativus])

HSP 1 Score: 124 bits (311), Expect = 1.24e-35
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY 60
          MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY
Sbjct: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY 60

Query: 61 IVH 63
          IVH
Sbjct: 61 IVH 63

[Close]

BLAST of Chy5G104100.1 vs. NCBI nr
Match: KAA0061559.1 (putative Arabinogalactan protein 22 [Cucumis melo var. makuwa] >TYK10713.1 putative Arabinogalactan protein 22 [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (299), Expect = 8.45e-34
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY 60
          MSSLKLTAVP VGFLFLI+LQLAHGHSHDISPA GPSNDGAAIDQGIAYVLLLLALA+TY
Sbjct: 1  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITY 60

Query: 61 IVH 63
          I+H
Sbjct: 61 IIH 63

[Close]

BLAST of Chy5G104100.1 vs. NCBI nr
Match: RQP02858.1 (hypothetical protein POPTR_018G078801 [Populus trichocarpa])

HSP 1 Score: 82.0 bits (201), Expect = 7.64e-19
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY 60
          MSS++L A+PI+GF+FL +L+   G     SPA GP+NDG  IDQGIAYVLL+LALA+TY
Sbjct: 1  MSSMRLHALPIIGFMFLALLEFGFGQGTAPSPAEGPTNDGKTIDQGIAYVLLMLALAITY 60

Query: 61 IVH 63
          + H
Sbjct: 61 LFH 63

[Close]

BLAST of Chy5G104100.1 vs. NCBI nr
Match: ESR64379.1 (hypothetical protein CICLE_v10010340mg [Citrus clementina] >KDO50879.1 hypothetical protein CISIN_1g036245mg [Citrus sinensis])

HSP 1 Score: 81.3 bits (199), Expect = 1.58e-18
Identity = 35/63 (55.56%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY 60
          M+S++L A+P++GF+F+ +LQL +  +   SPA  PS+DG AIDQGIAY+L++LALA+TY
Sbjct: 2  MNSMRLYALPVIGFMFMAILQLGNAQNMAPSPAPAPSSDGTAIDQGIAYILMVLALAITY 61

Query: 61 IVH 63
          +VH
Sbjct: 62 LVH 64

[Close]

BLAST of Chy5G104100.1 vs. NCBI nr
Match: KDP33656.1 (hypothetical protein JCGZ_07227 [Jatropha curcas])

HSP 1 Score: 80.9 bits (198), Expect = 2.25e-18
Identity = 41/64 (64.06%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAA-GPSNDGAAIDQGIAYVLLLLALAVT 60
          MS + L A+PI+GF+FL +LQL HG +   SPAA GPS+DG  IDQGIAYVL+L+ALAVT
Sbjct: 1  MSPMNLYALPIIGFMFLALLQLGHGQAIAPSPAAEGPSSDGNTIDQGIAYVLMLVALAVT 60

Query: 61 YIVH 63
          Y+ H
Sbjct: 61 YLFH 64

[Close]

BLAST of Chy5G104100.1 vs. TAIR 10
Match: AT5G53250.1 (arabinogalactan protein 22 )

HSP 1 Score: 61.6 bits (148), Expect = 2.6e-10
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY 60
          M+SLK     +  F+ + V+ L    SH  SPA  P++DG +IDQGIAYVL+++ALA+TY
Sbjct: 1  MASLKFPLEILAVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 IVH 64
           +H
Sbjct: 61 FIH 63

[Close]

BLAST of Chy5G104100.1 vs. TAIR 10
Match: AT5G24105.1 (arabinogalactan protein 41 )

HSP 1 Score: 58.2 bits (139), Expect = 2.9e-09
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 11 IVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH 64
          IV  +F I+L +AH  S   +PA  P++DG  IDQGIAYVL+L+AL +TY++H
Sbjct: 13 IVSIIFAILLPMAHAQS--AAPAPAPTSDGTTIDQGIAYVLMLVALVLTYLIH 63

[Close]

BLAST of Chy5G104100.1 vs. TAIR 10
Match: AT2G46330.1 (arabinogalactan protein 16 )

HSP 1 Score: 55.5 bits (132), Expect = 1.9e-08
Identity = 25/58 (43.10%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 6  LTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH 64
          +T   +  F+F ++L LA   S  ++PA  P++DG +IDQGIAY+L+++AL +TY++H
Sbjct: 7  VTGFALFSFVFAVILSLAGAQS--LAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of Chy5G104100.1 vs. TAIR 10
Match: AT3G61640.1 (arabinogalactan protein 20 )

HSP 1 Score: 50.8 bits (120), Expect = 4.6e-07
Identity = 22/58 (37.93%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 6  LTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH 64
          +  + +  F+F ++   A   S  ++PA  P++DG +IDQGIAY+L+++AL +TY++H
Sbjct: 7  VAVIALFAFVFAVISPFAGAQS--LAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

The following BLAST results are available for this feature:

BLAST of Chy5G104100.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FK16	3.7e-09	47.62	Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1	[more]
Q8L9T8	4.1e-08	52.83	Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1	[more]
O82337	2.6e-07	43.10	Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1	[more]
Q9M373	6.5e-06	37.93	Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1	[more]

BLAST of Chy5G104100.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIU0	6.5e-25	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004710 PE=4 SV=1	[more]
A0A5A7V7C0	1.6e-23	92.06	Putative Arabinogalactan protein 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A3N7G6R6	3.7e-12	60.32	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G078801 PE=4 ...	[more]
A0A067E6Q0	6.3e-12	55.56	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g036245mg PE=4 SV=1	[more]
V4WD40	6.3e-12	55.56	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10010340mg PE=4 ...	[more]

BLAST of Chy5G104100.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60622.1	1.24e-35	100.00	hypothetical protein Csa_019490 [Cucumis sativus]	[more]
KAA0061559.1	8.45e-34	92.06	putative Arabinogalactan protein 22 [Cucumis melo var. makuwa] >TYK10713.1 putat...	[more]
RQP02858.1	7.64e-19	60.32	hypothetical protein POPTR_018G078801 [Populus trichocarpa]	[more]
ESR64379.1	1.58e-18	55.56	hypothetical protein CICLE_v10010340mg [Citrus clementina] >KDO50879.1 hypotheti...	[more]
KDP33656.1	2.25e-18	64.06	hypothetical protein JCGZ_07227 [Jatropha curcas]	[more]

BLAST of Chy5G104100.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53250.1	2.6e-10	47.62	arabinogalactan protein 22	[more]
AT5G24105.1	2.9e-09	52.83	arabinogalactan protein 41	[more]
AT2G46330.1	1.9e-08	43.10	arabinogalactan protein 16	[more]
AT3G61640.1	4.6e-07	37.93	arabinogalactan protein 20	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009424	Arabinogalactan protein 16/20/22/41	PFAM	PF06376	AGP	coord: 32..63 e-value: 7.4E-17 score: 60.9
IPR009424	Arabinogalactan protein 16/20/22/41	PANTHER	PTHR33374	ARABINOGALACTAN PROTEIN 20	coord: 2..63
None	No IPR available	PANTHER	PTHR33374:SF7	ARABINOGALACTAN PEPTIDE 22	coord: 2..63

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy5G104100	Chy5G104100	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy5G104100.1.exon2	Chy5G104100.1.exon2	exon
Chy5G104100.1.exon1	Chy5G104100.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy5G104100.1.cds2	Chy5G104100.1.cds2	CDS
Chy5G104100.1.cds1	Chy5G104100.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy5G104100.1	Chy5G104100.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane