Chy4G078290.1 (mRNA) Cucumber (hystrix) v1

Overview
NameChy4G078290.1
TypemRNA
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH04: 17180330 .. 17181209 (-)
Sequence length257
RNA-Seq ExpressionChy4G078290.1
SyntenyChy4G078290.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGACAAAGCCGAACCATCACGGCCGTCACCTCACCCGCTCTGCCGGTCACATATTTATATCCCCCCCCCCCCGTCACCCAAGAGCTACATCTTCCCATTTCTCACCGCCGAATCATTTTGTGGGTTTTCAGATTCTATTCCCAAAGTCTTTTTCTTCAAAGGGTTCTTTCTTTTTTCTTCTTTTTTATTTCTTCTTCTCGTTTCTAGACCCTTTCTCTTTAGAATTTGGGTAAGAATTTACTTGTTATTCATTTGATTTGTTAGATATATAATTTTATTTCCATTTTCACCTGGTCGTTACTTGTTTTGGGATTCAACCATTTGTATGTTCTTATTTCATTTATATTTTGTTAATTTCTTTTTACAATGTGTTGTTCAAGTCAGTTTTTTCAGCTACTTTATCGTTTCTTTCAATAATTAATCTACTGGTTTTGATATTTTACTTGTTTCCTTCGAAATTATTGTTAATTTGGCTGGTGTGTGTGTGTTATGCTGAAGGTGAAGTTGTAGAATTTTTGTTTTTCAATTATTGTAATTGGAAGAGCTTTGACTTCATGTCATCTGATGGTAAGAAGCTCAGAATTTGGGTTTTATTGAATTCATATGGGGAAAAGGTTGTTTGTGCTTCTGTTAGTAATCAAATTGTTAGGTTTTTGGAACTTAGCTCCAAATCTAATCATTTGAACTTTGGTGATTGATGGTTTTTGTATATCTAGCACAGTGCAAACCCTTTCTAGATGACATGTATATGCTTTGGTTCATTAATTTTGTTTCTCTGGATGTTTTGTATTTATGTCTTTCTTCTATAGATGTCAAGATTGATGTTTTCTCTTTCCCTCTTTCCATTTCTAGATATTGGGCTTAGCGATAGGCTGA

mRNA sequence

ATGACGACAAAGCCGAACCATCACGGCCGTCACCTCACCCGCTCTGCCGGTCACATATTTATATCCCCCCCCCCCCGTCACCCAAGAGCTACATCTTCCCATTTCTCACCGCCGAATCATTTTGTGGGTTTTCAGATTCTATTCCCAAAGTCTTTTTCTTCAAAGGGTTCTTTCTTTTTTCTTCTTTTTTATTTCTTCTTCTCGTTTCTAGACCCTTTCTCTTTAGAATTTGGATATTGGGCTTAGCGATAGGCTGA

Coding sequence (CDS)

ATGACGACAAAGCCGAACCATCACGGCCGTCACCTCACCCGCTCTGCCGGTCACATATTTATATCCCCCCCCCCCCGTCACCCAAGAGCTACATCTTCCCATTTCTCACCGCCGAATCATTTTGTGGGTTTTCAGATTCTATTCCCAAAGTCTTTTTCTTCAAAGGGTTCTTTCTTTTTTCTTCTTTTTTATTTCTTCTTCTCGTTTCTAGACCCTTTCTCTTTAGAATTTGGATATTGGGCTTAGCGATAGGCTGA

Protein sequence

MTTKPNHHGRHLTRSAGHIFISPPPRHPRATSSHFSPPNHFVGFQILFPKSFSSKGSFFFLLFYFFFSFLDPFSLEFGYWA*R*AX
Homology
[Close]
BLAST of Chy4G078290.1 vs. ExPASy TrEMBL
Match: A0A0A0LDX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G608700 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.3e-07
Identity = 46/84 (54.76%), Postives = 49/84 (58.33%), Query Frame = 0 

Query: 1  MTTKPNHHGRHLTRSAGHIFISPPPRHPRATSSHFSPPNHFVGFQILFPKSFSSKGSFFF 60
          MTTKPNHHGRHLTRSAGHIFISPPP  P++    F     F GF    P+ F  KG   F
Sbjct: 1  MTTKPNHHGRHLTRSAGHIFISPPP-SPKSYIFPFLTAESFCGFSDSIPQLFFFKG---F 60

Query: 61 LLFYFFFSFL----DPFSLEFGYW 81
          LLF   F FL     PF   FG W
Sbjct: 61 LLFSSSFLFLLLLSTPFL--FGIW 78

[Close]
BLAST of Chy4G078290.1 vs. NCBI nr
Match: KGN58291.1 (hypothetical protein Csa_017580 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 5.54e-12
Identity = 45/82 (54.88%), Postives = 48/82 (58.54%), Query Frame = 0 

Query: 1  MTTKPNHHGRHLTRSAGHIFISPPPRHPRATSSHFSPPNHFVGFQILFPKSFSSKGSFFF 60
          MTTKPNHHGRHLTRSAGHIFISPPP  P++    F     F GF    P+ F  KG   F
Sbjct: 1  MTTKPNHHGRHLTRSAGHIFISPPPS-PKSYIFPFLTAESFCGFSDSIPQLFFFKG---F 60

Query: 61 LLFYFFFSFLDPFSLEF--GYW 80
          LLF   F FL   S  F  G W
Sbjct: 61 LLFSSSFLFLLLLSTPFLFGIW 78

The following BLAST results are available for this feature:
BLAST of Chy4G078290.1 vs.
Match NameE-valueIdentityDescription
BLAST of Chy4G078290.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LDX11.3e-0754.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G608700 PE=4 SV=1[more]
BLAST of Chy4G078290.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58291.15.54e-1254.88hypothetical protein Csa_017580 [Cucumis sativus][more]
BLAST of Chy4G078290.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Chy4G078290Chy4G078290gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy4G078290.1.exon2Chy4G078290.1.exon2exon
Chy4G078290.1.exon1Chy4G078290.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy4G078290.1.cds2Chy4G078290.1.cds2CDS
Chy4G078290.1.cds1Chy4G078290.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Chy4G078290.1Chy4G078290.1-proteinpolypeptide