Chy4G077840.1 (mRNA) Cucumber (hystrix) v1

Overview
NameChy4G077840.1
TypemRNA
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionPhosphoribosylaminoimidazole carboxylase atpase-subunit isoform 1
LocationchrH04: 15996025 .. 15998428 (-)
Sequence length297
RNA-Seq ExpressionChy4G077840.1
SyntenyChy4G077840.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAACATCAAGTTTGTTGAAATTGAAATTCCCAAATTTTATTGCTGTAATATGGATAAAAAAATAGTTATTGAAGTAGAAACCACGTTTTCATCATAAATGGAAAATAGTAAATAAATTGAGAAATAAAAAAAAAAATTGAAAATTACCCTTTCTTTATGTATGACTTTGAATTTTGCTCCTTAGCTAACCTTCCAACAAAAGACGATCTATTCTATACAAATTTTAGAACATTTATGAAATGTGAAGTGTAAAATTAAAAATGAATATTCTAAAAACAAAGGATAAGTTTATGGGCACATATTTTGTAGATCTGGAATTGCGTTTGTGGGACTAAAAAACACCATTTTGATCGTCAGTTAAATCTAATTATTTATTAATTTATCTGCAATCACTTTTTAAATTGTTCTTATGCTCAAAACACCTTCACATTGTCATTAGCTTTAGATTTTTACTTTAAGAAAAATATTTAGCTTAATTAAAGGTTAATTTTTCATAAATGTAACAAAATATTGAAATATGTAAACCTGTGTAACAAAAATGAGAAGTTCATGAAGTCGATAAAATATTTTCATAAATTTTAAATTTTTCTTTGACATTTTAAACGATTCGTCACTTCTCTTTCTTCTTTTTTCTTGCAATTTATTCATCTTCTCTTCTAAGTTTCTTCAGCTCATCTTTTAAATTTTCATTCTTCTATTTTTATTCATTTCTCTTTTTTTCTTCTCGTTCCTCTTCCAGAATATCAAGGTAGTTTAAATATTACTTTGATATGATCTAAACGATCGCTTACCTAGTCAACAACATAAACGTTTAGCATTAATGTTAGCACGATCGTTTAGATTTGAAGCCCTTTTCGTATCGTTTAAAAAGAACTACACGATCGTGTGGATATGATCTAAACGATCGCTTATCATAGTCAACATGATAGTTTTTTTAGGTCAACATGGTTGCTTAGATTTTAAGTCCTTTTTTCATCGTTTAAGAAAACTACACGTTCATGTGAATATGATCTAAACGATCGCTTACCATAGTCAACAAATTGTTTAGGGTAATCAACATGATCATTTAGATTTGAAGCATTTTTCCCATCGTTAAAAAAACTACACAATCGTGTATAATTTTCTACACGATTGTGTATCATGATCGTTTAGAAGAGAGAATTATACACGCGCGTGTGGTCAATTCATCACGTGTTGATTGGGGCATTGGTATTTTTCATTATGGGCTTGTGGACTTTTTCCGTTTTCAAAATTGTTCTATGCAGTGTAAATATTTTGTCGATGTATTATATTTTTTAAAAATTTCCTTAATTAAACTTTTAAAATTATCATCTTATAGTAAGTTTGATATTAACATCAATAATCACAATTGAGATAGCATGTCTACTTAGCTTGCTAAGTTATAATGACTTATTAATTTTATCAAGTAAACATACATTTTTATGTAAAATTAAAAAAATTGCCACACTATTTTTACTACTTTTACTTTACGATTTTCTCTCTCTAAATATTGTTAATTATGAACAATGATTAAGTATATTGTAGGTTGCACTTTAATCTCCAATACAACTCTCTTTTATTTAAACAATAAAAAGGAAAAACATTTCAATTAGTCTTTGTAAAAAATTGTTAACCGACCCTCGGATTTTGGGTCAATTACACAGCTTTCCCAAACAGAAAATAAAGTCACATCTTAAGCTAATACTAACTAGAGAACTTAAGATTATTATTCTACGAGTTGTTATAATTTCTTTGATCTCAAGTTTTTGATTAATTGGATTTGAATAATATGTTTGGATGTTTTCGAACAGTAGTTTATATGAATGGTCCAACCTACGTGTTCTTTGATTCATTCTAACGTTGTTGTCAACTTTCAAACTACATTACTCAGTCAAATCAATAACTATTTTTTTTTTAATTAAAACACTTCTAAAAAGTCTTTGGTCAATTTACACCAACAATACTATAAATATCAACCCAACTATCAATTCTTCTCATTCTCATTTCTCTTTACATAAAAAAAGAAAGAAGGAAAGAAGTTGGTATTATTTGTATTGAAATTAAAAGATGGGCATCTCTCAAAAGAATGTGTTGTTATTGTTCATTATTTTGGTAGCTTCTTCACAAGTTATGGTGGGAGCTAGGGTTATGAAAGTAGAGAAATGGATGAAGGAGGAAAAGAATGATCATAGGGTTTTTGTGTTACCTATCATTCAAGTCTTGCAACGTGCTCCAGTGCCACCGTCCGGTCGCAATCCATGCACCGGCATTCCAGGCCAAAGCAATGGTCGATGCACTCTTCAGACGATGAATGTTGCCGGTCATCATTTCGTCAATGCACGACCGCCAGCTATTCCCAATTCCGCTCTCAACGATGCCTCTACTGCTCAAAGCTCTTGA

mRNA sequence

ATGTCAACATCAACTTCTTCACAAGTTATGGTGGGAGCTAGGGTTATGAAAGTAGAGAAATGGATGAAGGAGGAAAAGAATGATCATAGGGTTTTTGTGTTACCTATCATTCAAGTCTTGCAACGTGCTCCAGTGCCACCGTCCGGTCGCAATCCATGCACCGGCATTCCAGGCCAAAGCAATGGTCGATGCACTCTTCAGACGATGAATGTTGCCGGTCATCATTTCGTCAATGCACGACCGCCAGCTATTCCCAATTCCGCTCTCAACGATGCCTCTACTGCTCAAAGCTCTTGA

Coding sequence (CDS)

ATGTCAACATCAACTTCTTCACAAGTTATGGTGGGAGCTAGGGTTATGAAAGTAGAGAAATGGATGAAGGAGGAAAAGAATGATCATAGGGTTTTTGTGTTACCTATCATTCAAGTCTTGCAACGTGCTCCAGTGCCACCGTCCGGTCGCAATCCATGCACCGGCATTCCAGGCCAAAGCAATGGTCGATGCACTCTTCAGACGATGAATGTTGCCGGTCATCATTTCGTCAATGCACGACCGCCAGCTATTCCCAATTCCGCTCTCAACGATGCCTCTACTGCTCAAAGCTCTTGA

Protein sequence

MSTSTSSQVMVGARVMKVEKWMKEEKNDHRVFVLPIIQVLQRAPVPPSGRNPCTGIPGQSNGRCTLQTMNVAGHHFVNARPPAIPNSALNDASTAQSS*
Homology
BLAST of Chy4G077840.1 vs. ExPASy TrEMBL
Match: A0A0A0LCX8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G391390 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.0e-41
Identity = 87/93 (93.55%), Postives = 89/93 (95.70%), Query Frame = 0

Query: 6   SSQVMVGARVMKVEKWMKEEKNDHRVFVLPIIQVLQRAPVPPSGRNPCTGIPGQSNGRCT 65
           SSQVMVGARVMKVEKWMKEEKNDH VFVLPIIQVLQRAPVPPSGRNPCTGIPGQSNGRCT
Sbjct: 18  SSQVMVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPSGRNPCTGIPGQSNGRCT 77

Query: 66  LQTMNVAGHHFVNARPPAIPNSALNDASTAQSS 99
           LQTMNVAGHHFV+ARPP IP+SALN  STAQSS
Sbjct: 78  LQTMNVAGHHFVHARPPPIPDSALNVDSTAQSS 110

BLAST of Chy4G077840.1 vs. ExPASy TrEMBL
Match: A0A6J1K3A7 (uncharacterized protein LOC111491306 OS=Cucurbita maxima OX=3661 GN=LOC111491306 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.1e-18
Identity = 63/91 (69.23%), Postives = 68/91 (74.73%), Query Frame = 0

Query: 10  MVGARVMKVEKWMKEEKNDHRVFVLPIIQVLQRAPVPPSGRNPCTGIPGQSNGRCTLQTM 69
           M  ARVM  EKWMK +++    FVLP IQVLQRAPVPPSGRNPC+ IPGQSNGRCTLQTM
Sbjct: 24  MEAARVMSGEKWMKAKQD--MAFVLP-IQVLQRAPVPPSGRNPCSTIPGQSNGRCTLQTM 83

Query: 70  NVAG--HHFVNARPPAIPNSALNDASTAQSS 99
           NVAG    FV A PPAI + A   AS AQSS
Sbjct: 84  NVAGGPGRFVQA-PPAIHDPA-PIASAAQSS 109

BLAST of Chy4G077840.1 vs. ExPASy TrEMBL
Match: A0A6J1ET04 (uncharacterized protein LOC111437447 OS=Cucurbita moschata OX=3662 GN=LOC111437447 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.7e-17
Identity = 62/91 (68.13%), Postives = 67/91 (73.63%), Query Frame = 0

Query: 10  MVGARVMKVEKWMKEEKNDHRVFVLPIIQVLQRAPVPPSGRNPCTGIPGQSNGRCTLQTM 69
           M  ARVM   KWMK +++    FVLP IQVLQRAPVPPSGRNPC+ IPGQSNGRCTLQTM
Sbjct: 24  MEAARVMSGHKWMKAKQD--IAFVLP-IQVLQRAPVPPSGRNPCSTIPGQSNGRCTLQTM 83

Query: 70  NVAG--HHFVNARPPAIPNSALNDASTAQSS 99
           NVAG    FV A PPAI + A   AS AQSS
Sbjct: 84  NVAGGPGRFVQA-PPAIHDPA-PIASAAQSS 109

BLAST of Chy4G077840.1 vs. ExPASy TrEMBL
Match: A0A7N0SY69 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.6e-09
Identity = 39/86 (45.35%), Postives = 55/86 (63.95%), Query Frame = 0

Query: 12  GARVMKVEKWMKEEKNDHRVFVLPIIQVLQRAPVPPSGRNPCTGIPGQS-NGRCTLQTMN 71
           GAR+++ E   +++  + +V +L I+Q LQR PVPPSGR+PCT IPGQS  GRCTL    
Sbjct: 29  GARLLEAE---RQQWVEQKVQILAIVQRLQRGPVPPSGRSPCTYIPGQSRGGRCTLGQRT 88

Query: 72  VAGHHFVNARPPAIPNSALNDASTAQ 97
            A HH   + PP  P    +D++ +Q
Sbjct: 89  YAVHHHNLSPPPPPPPPPHSDSNASQ 111

BLAST of Chy4G077840.1 vs. ExPASy TrEMBL
Match: B9I5L3 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_013G043600 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.6e-09
Identity = 38/92 (41.30%), Postives = 58/92 (63.04%), Query Frame = 0

Query: 7   SQVMVGARVMKVEKWMKEEKNDHRVFVLPIIQVLQRAPVPPSGRNPCTGIPGQSNGRCTL 66
           SQ ++ AR ++ E+W ++        ++  IQ LQR PVPPSG +PCT IPG+ +G+C+L
Sbjct: 24  SQQVLAARPLEGERWSEK--------IVGNIQSLQRGPVPPSGGSPCTHIPGRGSGKCSL 83

Query: 67  QTMNVAGHHFVNARPPAIPNSALNDASTAQSS 99
             MN AG H V   PPA P++ +N  + A ++
Sbjct: 84  GEMNFAG-HTVALAPPAFPDAIMNFGAAASTT 106

BLAST of Chy4G077840.1 vs. NCBI nr
Match: KAG6606390.1 (hypothetical protein SDJN03_03707, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100 bits (249), Expect = 3.57e-25
Identity = 63/91 (69.23%), Postives = 68/91 (74.73%), Query Frame = 0

Query: 10 MVGARVMKVEKWMKEEKNDHRVFVLPIIQVLQRAPVPPSGRNPCTGIPGQSNGRCTLQTM 69
          M  ARVM  EKWMK +++    FVLPI QVLQRAPVPPSGRNPC+ IPGQSNGRCTLQTM
Sbjct: 10 MEAARVMSGEKWMKAKQDI--AFVLPI-QVLQRAPVPPSGRNPCSTIPGQSNGRCTLQTM 69

Query: 70 NVAGH--HFVNARPPAIPNSALNDASTAQSS 98
          NVAG    FV A PPAI + A   AS AQSS
Sbjct: 70 NVAGGPARFVQA-PPAIHDPAPI-ASAAQSS 95

BLAST of Chy4G077840.1 vs. NCBI nr
Match: XP_022995941.1 (uncharacterized protein LOC111491306 [Cucurbita maxima])

HSP 1 Score: 100 bits (250), Expect = 3.74e-25
Identity = 63/91 (69.23%), Postives = 68/91 (74.73%), Query Frame = 0

Query: 10  MVGARVMKVEKWMKEEKNDHRVFVLPIIQVLQRAPVPPSGRNPCTGIPGQSNGRCTLQTM 69
           M  ARVM  EKWMK +++    FVLPI QVLQRAPVPPSGRNPC+ IPGQSNGRCTLQTM
Sbjct: 24  MEAARVMSGEKWMKAKQD--MAFVLPI-QVLQRAPVPPSGRNPCSTIPGQSNGRCTLQTM 83

Query: 70  NVAGH--HFVNARPPAIPNSALNDASTAQSS 98
           NVAG    FV A PPAI + A   AS AQSS
Sbjct: 84  NVAGGPGRFVQA-PPAIHDPAPI-ASAAQSS 109

BLAST of Chy4G077840.1 vs. NCBI nr
Match: XP_022931191.1 (uncharacterized protein LOC111437447 [Cucurbita moschata])

HSP 1 Score: 98.6 bits (244), Expect = 3.05e-24
Identity = 62/91 (68.13%), Postives = 67/91 (73.63%), Query Frame = 0

Query: 10  MVGARVMKVEKWMKEEKNDHRVFVLPIIQVLQRAPVPPSGRNPCTGIPGQSNGRCTLQTM 69
           M  ARVM   KWMK +++    FVLPI QVLQRAPVPPSGRNPC+ IPGQSNGRCTLQTM
Sbjct: 24  MEAARVMSGHKWMKAKQDI--AFVLPI-QVLQRAPVPPSGRNPCSTIPGQSNGRCTLQTM 83

Query: 70  NVAGH--HFVNARPPAIPNSALNDASTAQSS 98
           NVAG    FV A PPAI + A   AS AQSS
Sbjct: 84  NVAGGPGRFVQA-PPAIHDPAPI-ASAAQSS 109

BLAST of Chy4G077840.1 vs. NCBI nr
Match: XP_002319090.1 (uncharacterized protein LOC7487687 [Populus trichocarpa] >PNT06657.1 hypothetical protein POPTR_013G043600 [Populus trichocarpa])

HSP 1 Score: 72.0 bits (175), Expect = 1.04e-13
Identity = 38/89 (42.70%), Postives = 56/89 (62.92%), Query Frame = 0

Query: 7   SQVMVGARVMKVEKWMKEEKNDHRVFVLPIIQVLQRAPVPPSGRNPCTGIPGQSNGRCTL 66
           SQ ++ AR ++ E+W ++        ++  IQ LQR PVPPSG +PCT IPG+ +G+C+L
Sbjct: 24  SQQVLAARPLEGERWSEK--------IVGNIQSLQRGPVPPSGGSPCTHIPGRGSGKCSL 83

Query: 67  QTMNVAGHHFVNARPPAIPNSALNDASTA 95
             MN AGH    A PPA P++ +N  + A
Sbjct: 84  GEMNFAGHTVALA-PPAFPDAIMNFGAAA 103

BLAST of Chy4G077840.1 vs. NCBI nr
Match: KAG6738310.1 (hypothetical protein POTOM_057921 [Populus tomentosa] >TKR86240.1 hypothetical protein D5086_0000239880 [Populus alba])

HSP 1 Score: 71.6 bits (174), Expect = 1.48e-13
Identity = 36/89 (40.45%), Postives = 56/89 (62.92%), Query Frame = 0

Query: 7   SQVMVGARVMKVEKWMKEEKNDHRVFVLPIIQVLQRAPVPPSGRNPCTGIPGQSNGRCTL 66
           S  ++ AR ++ E+W+K++  +        IQ L+R PVPPSG + CT IPG+ +G C L
Sbjct: 24  SHQILAARPLEGEQWLKQDLGN--------IQSLRRGPVPPSGGSSCTNIPGRGSGHCPL 83

Query: 67  QTMNVAGHHFVNARPPAIPNSALNDASTA 95
             MN AGH+  +A PPA P++ +N A+ +
Sbjct: 84  GEMNFAGHNVAHA-PPAFPDAIVNFAAAS 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LCX82.0e-4193.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G391390 PE=4 SV=1[more]
A0A6J1K3A74.1e-1869.23uncharacterized protein LOC111491306 OS=Cucurbita maxima OX=3661 GN=LOC111491306... [more]
A0A6J1ET042.7e-1768.13uncharacterized protein LOC111437447 OS=Cucurbita moschata OX=3662 GN=LOC1114374... [more]
A0A7N0SY691.6e-0945.35Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1[more]
B9I5L31.6e-0941.30Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_013G043600 PE=4 ... [more]
Match NameE-valueIdentityDescription
KAG6606390.13.57e-2569.23hypothetical protein SDJN03_03707, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022995941.13.74e-2569.23uncharacterized protein LOC111491306 [Cucurbita maxima][more]
XP_022931191.13.05e-2468.13uncharacterized protein LOC111437447 [Cucurbita moschata][more]
XP_002319090.11.04e-1342.70uncharacterized protein LOC7487687 [Populus trichocarpa] >PNT06657.1 hypothetica... [more]
KAG6738310.11.48e-1340.45hypothetical protein POTOM_057921 [Populus tomentosa] >TKR86240.1 hypothetical p... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33592FAMILY NOT NAMEDcoord: 4..96
NoneNo IPR availablePANTHERPTHR33592:SF5TRANSMEMBRANE PROTEINcoord: 4..96

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Chy4G077840Chy4G077840gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy4G077840.1.exon2Chy4G077840.1.exon2exon
Chy4G077840.1.exon1Chy4G077840.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy4G077840.1.cds2Chy4G077840.1.cds2CDS
Chy4G077840.1.cds1Chy4G077840.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Chy4G077840.1Chy4G077840.1-proteinpolypeptide