Chy4G075040.1 (mRNA) Cucumber (hystrix) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCCTGGAGAGTGGCCAAAGCCGCAAGTGTGCTTGACCCATAAATAGTGAAAATAAAAGTGTATTACCTACAAAAAATTCTCTTACCCATAGTGGACCACATAACATGTGCAGGGCTGGAAGAAACTAACTGGTTCTCGACTTCTCGTGACTGTCTTGTAGACTGTGGCTCCCTTTAAGACAGATAGACATTCTACTATAACAATAGCAGCCTCTTAGCAATTATTTTGGTAGCTCTTTGATGTACCATAAGCACAATAATTCCTTAGACACCATCAGTGTTTTAAAAAGCCTTCTCGGGCACGCACCAGGTCTAACACCTTGTCTTGAAAAGGCGAGGCTCACAAAATAAGGTGGGCTTCAGGCATGCGCCTTTTGTGAAGCCTCAAAGCTCAAAGCCTTTTACCTTAGGGGCTTTTTCGTTATTTTTTAAAAATTAGTAATAATTAAGGGGTTTCCTTCTTTATCAACTAAAAAAAGGTCAATTTACTAAGCTTAAATGAGTGTTTTTTTTTTTTTTTTTTTTTCATTTTTCCACTTCAATTATGCTCTCTCTTCTTAATTTAGTGTTATATGTATTGTGCCGCAAAAAGAAAAGCCCATGCTTTTTTTGCACTTTATGCTTAAGCCTCGGAAAACTATTGCGCTTTATTGTGCCTTGAGCTTTAAAGAACACTAGACATCAGTCATCACCGTTGATATTGAACTTGGGTTGCTGTCGGTTTTTGAAATGGCCACTTATGGTTGGGAAAGCTTAACCAAACTTAGACAGTGTGGATGTTATTTTTACTCCCTGGTTTCATTTTAGTTTTTATAATCCTTCATAATCTAGCTTTTTCCTAAGAATCATGCCGAGGCTAGAGTTTAAGAATTTAATTTCGGTTCAAGAACTATCTTACTATTAATGTTCCATAGTATGTAACTGATGGGCATATTATTCCAAATATTTGAAAAGCTTGCTTAATTGGACTTCGATCCTTATCATCATTAACGAGTGTTTCCAATTCCTTTGTTCTTATAATGATGATACGCACTGTACTATCTCTTCTGGTGGTAAATGTAGGAGGAAGTGCTGCAAGTGGTGAAGAGCCAAGTGATGCGAATGAGGAAGAAATAGATGAAGCCAACAAGTCAACGGAAGAGGGGAAGGTTCCTCACTATGATGATCATCTAACACCGGCGGAAAGACGTTATATTGAACAGAAGGAGAGAATTGATGTTCATAGACTGGCTAAGAAAGCTAATAAATCTCATCGCGACCGAATCCAGGACTTTAATCAATACCTAGCAAACATGAGTGAGCATTATGACATTCCTAAAGTTGGTCCTGGCTGA ATGTCCTGGAGAGTGGCCAAAGCCGCAAGAGGAAGTGCTGCAAGTGGTGAAGAGCCAAGTGATGCGAATGAGGAAGAAATAGATGAAGCCAACAAGTCAACGGAAGAGGGGAAGGTTCCTCACTATGATGATCATCTAACACCGGCGGAAAGACGTTATATTGAACAGAAGGAGAGAATTGATGTTCATAGACTGGCTAAGAAAGCTAATAAATCTCATCGCGACCGAATCCAGGACTTTAATCAATACCTAGCAAACATGAGTGAGCATTATGACATTCCTAAAGTTGGTCCTGGCTGA ATGTCCTGGAGAGTGGCCAAAGCCGCAAGAGGAAGTGCTGCAAGTGGTGAAGAGCCAAGTGATGCGAATGAGGAAGAAATAGATGAAGCCAACAAGTCAACGGAAGAGGGGAAGGTTCCTCACTATGATGATCATCTAACACCGGCGGAAAGACGTTATATTGAACAGAAGGAGAGAATTGATGTTCATAGACTGGCTAAGAAAGCTAATAAATCTCATCGCGACCGAATCCAGGACTTTAATCAATACCTAGCAAACATGAGTGAGCATTATGACATTCCTAAAGTTGGTCCTGGCTGA MSWRVAKAARGSAASGEEPSDANEEEIDEANKSTEEGKVPHYDDHLTPAERRYIEQKERIDVHRLAKKANKSHRDRIQDFNQYLANMSEHYDIPKVGPG* Homology
BLAST of Chy4G075040.1 vs. ExPASy Swiss-Prot
Match: B0JZ89 (Protein FAM32A OS=Xenopus tropicalis OX=8364 GN=fam32a PE=3 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 9.8e-09 Identity = 32/77 (41.56%), Postives = 52/77 (67.53%), Query Frame = 0
BLAST of Chy4G075040.1 vs. ExPASy Swiss-Prot
Match: Q6GQN4 (Protein FAM32A-like OS=Danio rerio OX=7955 GN=fam32al PE=3 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 2.9e-08 Identity = 30/73 (41.10%), Postives = 48/73 (65.75%), Query Frame = 0
BLAST of Chy4G075040.1 vs. ExPASy Swiss-Prot
Match: Q9CR80 (Protein FAM32A OS=Mus musculus OX=10090 GN=Fam32a PE=2 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 3.2e-07 Identity = 29/72 (40.28%), Postives = 48/72 (66.67%), Query Frame = 0
BLAST of Chy4G075040.1 vs. ExPASy Swiss-Prot
Match: A6QR31 (Protein FAM32A OS=Bos taurus OX=9913 GN=FAM32A PE=3 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 4.6e-06 Identity = 33/92 (35.87%), Postives = 56/92 (60.87%), Query Frame = 0
BLAST of Chy4G075040.1 vs. ExPASy Swiss-Prot
Match: Q9Y421 (Protein FAM32A OS=Homo sapiens OX=9606 GN=FAM32A PE=1 SV=2) HSP 1 Score: 52.0 bits (123), Expect = 4.6e-06 Identity = 33/92 (35.87%), Postives = 56/92 (60.87%), Query Frame = 0
BLAST of Chy4G075040.1 vs. ExPASy TrEMBL
Match: A0A0A0LE92 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G640580 PE=4 SV=1) HSP 1 Score: 177.9 bits (450), Expect = 2.0e-41 Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0
BLAST of Chy4G075040.1 vs. ExPASy TrEMBL
Match: A0A1S3CN03 (protein FAM32A OS=Cucumis melo OX=3656 GN=LOC103502791 PE=4 SV=1) HSP 1 Score: 176.4 bits (446), Expect = 5.9e-41 Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0
BLAST of Chy4G075040.1 vs. ExPASy TrEMBL
Match: A0A5D3DC76 (Protein FAM32A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00800 PE=4 SV=1) HSP 1 Score: 176.0 bits (445), Expect = 7.7e-41 Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 0
BLAST of Chy4G075040.1 vs. ExPASy TrEMBL
Match: A0A6J1IS50 (protein FAM32A-like OS=Cucurbita maxima OX=3661 GN=LOC111480025 PE=4 SV=1) HSP 1 Score: 167.2 bits (422), Expect = 3.6e-38 Identity = 86/92 (93.48%), Postives = 88/92 (95.65%), Query Frame = 0
BLAST of Chy4G075040.1 vs. ExPASy TrEMBL
Match: A0A6J1GVE6 (protein FAM32A OS=Cucurbita moschata OX=3662 GN=LOC111457896 PE=4 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 4.7e-38 Identity = 86/92 (93.48%), Postives = 88/92 (95.65%), Query Frame = 0
BLAST of Chy4G075040.1 vs. NCBI nr
Match: XP_004144416.1 (protein FAM32A [Cucumis sativus] >XP_004144417.1 protein FAM32A [Cucumis sativus] >KGN58576.2 hypothetical protein Csa_001967 [Cucumis sativus]) HSP 1 Score: 175 bits (444), Expect = 2.87e-54 Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0
BLAST of Chy4G075040.1 vs. NCBI nr
Match: KAA0068186.1 (protein FAM32A [Cucumis melo var. makuwa] >TYK21108.1 protein FAM32A [Cucumis melo var. makuwa]) HSP 1 Score: 173 bits (438), Expect = 7.78e-54 Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 0
BLAST of Chy4G075040.1 vs. NCBI nr
Match: XP_008465099.1 (PREDICTED: protein FAM32A [Cucumis melo]) HSP 1 Score: 173 bits (439), Expect = 1.66e-53 Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0
BLAST of Chy4G075040.1 vs. NCBI nr
Match: XP_022980751.1 (protein FAM32A-like [Cucurbita maxima] >XP_022980752.1 protein FAM32A-like [Cucurbita maxima]) HSP 1 Score: 164 bits (415), Expect = 7.75e-50 Identity = 86/92 (93.48%), Postives = 88/92 (95.65%), Query Frame = 0
BLAST of Chy4G075040.1 vs. NCBI nr
Match: XP_023527034.1 (protein FAM32A [Cucurbita pepo subsp. pepo] >XP_023527035.1 protein FAM32A [Cucurbita pepo subsp. pepo]) HSP 1 Score: 164 bits (415), Expect = 7.75e-50 Identity = 86/92 (93.48%), Postives = 88/92 (95.65%), Query Frame = 0
BLAST of Chy4G075040.1 vs. TAIR 10
Match: AT1G16810.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1754, eukaryotic (InterPro:IPR013865); Has 395 Blast hits to 394 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 181; Fungi - 91; Plants - 65; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). ) HSP 1 Score: 113.6 bits (283), Expect = 9.1e-26 Identity = 60/94 (63.83%), Postives = 74/94 (78.72%), Query Frame = 0
BLAST of Chy4G075040.1 vs. TAIR 10
Match: AT1G16810.2 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1754, eukaryotic (InterPro:IPR013865); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 113.6 bits (283), Expect = 9.1e-26 Identity = 60/94 (63.83%), Postives = 74/94 (78.72%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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