Chy3G062810.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy3G062810.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH03: 15992596 .. 15995876 (-)
Sequence length	195
RNA-Seq Expression	Chy3G062810.1
Synteny	Chy3G062810.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAATGTGAAACAGGATGTAGAATTTGAAACACCTGAAAACAAGATGCATATGAATGACCAAGAAGATGAATCAAATGTAAGTATATTAAACATAAATTGTAGTATATATATTATAAGGTTTGTTCTAATGTTTATATTTTTTTTTCTTTAAGATGAATGAGGGAGATAGAACCAACTATATGTCAGAGTCTAATGAGGTATGTGTGTTTAGGATTGATGTTATTTGTTTAATTTTCTATTATTACCAAGTTTATAATTTAATGGTATTGTAACTCGTGCAAGACAATGTACCCATTGCACAAAGAAATTTGTTCAAAGATATGTCAAGGTTGGGAAAAAAACAGAATATGAAAATGTATGTGTGTTAATGTATTTTTCTTAAAATTAATTATAAAATAATATAATGTGTAATTGATAATATGAATTGTAGGTATCAAATAAGAGAAAGAGAACTGGAAAGCTAAAAAGAAAAGCATAGAAGAAGGAAACTATTAAAAAGGAAAAACAAAGTGAAAAAAAGAATGACAGAAAAAACACTGGTATATAAGGTATATACATATACGATTTTAACTTATTAAATTGCTGATATTATTAACAGTTATATTATTGATATTGTTTCATAATTCTAAAGTGAAAAAATATGGCAGAAGAGTCGTCCCATGGAGGATATTGATCAGGTGCAGTTTATTTAATTCATACATACTATTACAAATATAATATAATTGTATATATAAAGTATACATTGCATTATATTTCCCTATGTTGTATATTTGCAGGGTGAACCATTGATCCTGAAAAAGGGGAAATGGTCTCGTGCTCAGAAACTTAGCATCTATGCAAGAATAGATGTAATTACGAATATTAGAAGGAAACTTAATAGTGAACAAATAGATGAATTAGGAAGACAATATTTGGTAGTTTCTTAGAGCTGAAAATGTTAAAATTCTAAAGTCAATTGTTGTACCATATTATAAGACGTCAATGCACATTGACTAAATATGATGAATTGTGGTTCAACTTTGAAGGAACTTTAGCAAAATTTGGTATGAGGGAATTCCAAGCCATAATAGGATTAAATTGTGGTCCACTGCCTACTGTAGATATTTCAAAGCTTAAAGGAAATTTTTTGACAAAATACTTCAAGAATGAGGACCCTATTCCTAGGACAAGGGTCTCTTCTCTGTTTAATGATTTAAGATAATTGAAGGAGGAAAACAAAGTTAAAATGGCTAAAATATACTTCCTTAAAAATTTTCTACTTGGTAAACAGTTGACAACATGAGTGGATTTGGAGCACATTAAATTGGTAGATGATGATAACCAATTTGATGCATATCCATGGGGAAAAATAGGTTATAATGTCCTATTAGAGTCTATAAAAAAATCAATCAAAAACCCTAGCTGTTAGAATATCTAGATTTGCTTATTCTCTCCTGGTATGGGTATATGAATGTATCCCATTGTTGACGGGACCTTCAATATTCTGTGCAAAAAGAGTGGATGAAATAAATATCTTCATGCTTAATTGGGTTGTTGACAACCATCCATAGTGGAAGGAACTAGCAAAGAAGGTCTTCGACAATGAGCAGGTAATAAGATATTGTTGTATATTTGATATGTACAATTAATGTTATATATATACTTAGTCTCATAATGTGTTGTTTTTAATATGTCATTCATGCAACACTTTGAATTCAACCCAATGTTTCATGAAGAAGAAACCGTGGAACCAAGAACATTCGAATAAAATATACATTCAGAGGAAACATAAAAGAATTTTGAAAAAAGAGAATGCTCTAGACAAGAAGAGCGTAAGACTGTGGAAGACTTGCTGAGCATAATTATGGCCAACAATGAAGCACTGAACAAGAAGATGGACAAACTATTATTTGAGGTTGAAGAACTAAAAAAATTGTTCAAAAATAATAACAAAAAAACAGGAAAAGATAATGACAACAAAGAGATAAATGACAATGATGATCTGTAAGTGGAACATCTACTGAACATATGTGTTCAGAATCGAACCTAGTAAGAACCCATATGGTTCTATCACCATGAAAACAACTAGAAGCACGCAATGACCATTTGCAATCTTCAATTACACACTGCAAATTCAACACTTCCTTGTTTGATTTCACTGTAACGTATTGAAAATTATCTCTAATAGCAATGGCTTGAACGAACTTTTTCAATAAAGATTTGGTTGAAAACATGTCTTGGATTTTTAGTACGAAGTTGGAATCTATCTTAGTATCTATGGTTTTAAAAAAGCAACCTCCATCTGAATGGATTTGTATTTGAAATGAACTTGGGGACGATGAACCCAAAGAAATAGCTAAAAGGCCAATAGAATGAACAATAAGGGCAATATGTTGTTCAACGTTAGATGTCATTATATGGTAAACCCGTTTAACATCGTTGTCATTCTTTATTGTCATATATTTCTTAAGACATTCTATATGACCTAAGCAAAGGTATATATCAAAGTTGTTCGTATAAAAAAAATTATCTAACTTGGATTTAAGGACCTTGGACAATTCGGTATATGGCATATGTTCATCAACTACAATTTCAGACACATTAAAACTAACGTAATTGTTAGTTTTGTTGAAAAAACTATCGAAGTAAACTGCAATACTGACCATCTTATTTAAAAAATATTACATGTATAATTGTCAATAAGATGTAGTATATATATAATAAAACATCATACTGGTAAATTATACAACGATTATAATAGAAAGTTAGATGTGATATATATGTAATAAATGAAATATATAACATATTATGATTTGCGGGAATATTTAAAACTTAGTATAATGATAAATAATATGTGGTATATATTTAATAAATAATGTCAAAAAACGATGATACCTTACGGATATATAGTTAAATATATTGTTGTATACAATATGAAAATTAAAATTTATAATAGAGAAGGGACGGAAAACATACTGTAAAATATGTGTATATATGTGTTCTTGAAATACATGGAATGGAGAATAACGAAAATAATTGAAATTTCCTACTAACCGGAAGACTACTGAGAAGAAAAGGAATAAAGAAAATGAAATCTACTAACCGAAAGTCCGACCAATACTAACCGGAAGGAAACGAAATATACGAAAAATAGTAAGGTTAATGAAAATGATGTTCAAGGATAAAGAAAAATGTGAAGAAAATTATATGTTTCTTTATTAATCAAAGGTAAACGTAATGAACGGTAGCCGACGACGAAATCAATTGAAAATTGAAAGGTTGAGGTTATGGAAATAA

mRNA sequence

ATGAAAAATGTGAAACAGGATGTAGAATTTGAAACACCTGAAAACAAGATGCATATGAATGACCAAGAAGATGAATCAAATATGAATGAGGGAGATAGAACCAACTATATGTCAGAGTCTAATGAGGTAAACGTAATGAACGGTAGCCGACGACGAAATCAATTGAAAATTGAAAGGTTGAGGTTATGGAAATAA

Coding sequence (CDS)

ATGAAAAATGTGAAACAGGATGTAGAATTTGAAACACCTGAAAACAAGATGCATATGAATGACCAAGAAGATGAATCAAATATGAATGAGGGAGATAGAACCAACTATATGTCAGAGTCTAATGAGGTAAACGTAATGAACGGTAGCCGACGACGAAATCAATTGAAAATTGAAAGGTTGAGGTTATGGAAATAA

Protein sequence

MKNVKQDVEFETPENKMHMNDQEDESNMNEGDRTNYMSESNEVNVMNGSRRRNQLKIERLRLWK*

Homology

The following BLAST results are available for this feature:

BLAST of Chy3G062810.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy3G062810.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy3G062810.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy3G062810.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..51

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy3G062810	Chy3G062810	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy3G062810.1.exon3	Chy3G062810.1.exon3	exon
Chy3G062810.1.exon2	Chy3G062810.1.exon2	exon
Chy3G062810.1.exon1	Chy3G062810.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy3G062810.1.cds3	Chy3G062810.1.cds3	CDS
Chy3G062810.1.cds2	Chy3G062810.1.cds2	CDS
Chy3G062810.1.cds1	Chy3G062810.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy3G062810.1	Chy3G062810.1-protein	polypeptide