Chy2G035400.1 (mRNA) Cucumber (hystrix) v1

Overview
NameChy2G035400.1
TypemRNA
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH02: 9330999 .. 9331892 (-)
Sequence length229
RNA-Seq ExpressionChy2G035400.1
SyntenyChy2G035400.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTTGGCCGCCGCACCGAGGAAGAAGCTCAGTCACCGTGGGCTTGGGCTTCGATCGTCCCAATTGAATGTATGTGAGCCCAAGCTCATGGTTTATAGGCTGATAAGCCTTTTTTATAAGGACTCCATTTCAATTGAGATAAACGTGAATGTTGCAAAATTTAGTGTAATAAAAGGAAAAATAGCAAATTCGAAAATTAATAAGATTTTTGTCCAAATCGGCAGTTCCAATTTTTTTTGACTTTTTTTTACTCGATTATATCCTTTATGCAGGATAATATTTTTTTACCGTGTACTTGCATGATGCAAATAATGAGGTGAAATATCATATAGTCTTGGAAAATCTTAACATATTTTCGATTGATAAGATTTTCTCAATATCCCCTAAATACATGTCTATAATTCGTAACAGATTTTTGGATTTTTAGTATTTAAATCAAATTAAGTAACATTTATTTATTTAATTCATAAATTTTACATTTAATAACGATTCCCTTGAAAAATGGCTAATAGATTTTGAACCTTAATTATATTTCATAATATTTTGAATTTAAATATTATGACTCTTTCTCGTAAATAAGGTTGAGCAGTTTCTCTCATCCCTCTATGGCTTCTCGATATGACAAAAGTGATTCTCCTAGTAGCTAAGAGTGAAATAGGAGTAGCCTCTCTCATCCCTTTGTGGCTTCTCGATCTGACAAAAGTAATTCTCCTAGTAGCTAAAAGAGAAATAGGAGTAGCCTAAACCGTGAAAACAAGGTTGTGGGAGAGCAATACAAGTCTCGTGCTGCCAGGCAAAGCGATGGACTGTTACACCCTAGATGGCGAGACTCCAGTAGTCGAAAGCATCACTAGCTTATGCTCGAACCCGAGTAGCATGGGGCATGTGTGG

mRNA sequence

ATGAGCTTGGCCGCCGCACCGAGGAAGAAGCTCAGTCACCGTGGGCTTGGGCTTCGATCGTCCCAATTGAATGTTGAGCAGTTTCTCTCATCCCTCTATGGCTTCTCGATATGACAAAAGTGATTCTCCTAGCAAAGCGATGGACTGTTACACCCTAGATGGCGAGACTCCAGTAGTCGAAAGCATCACTAGCTTATGCTCGAACCCGAGTAGCATGGGGCATGTGTGG

Coding sequence (CDS)

ATGAGCTTGGCCGCCGCACCGAGGAAGAAGCTCAGTCACCGTGGGCTTGGGCTTCGATCGTCCCAATTGAATGTTGAGCAGTTTCTCTCATCCCTCTATGGCTTCTCGATATGACAAAAGTGATTCTCCTAGCAAAGCGATGGACTGTTACACCCTAGATGGCGAGACTCCAGTAGTCGAAAGCATCACTAGCTTATGCTCGAACCCGAGTAGCATGGGGCATGTGTGG

Protein sequence

MSLAAAPRKKLSHRGLGLRSSQLNVEQFLSSLYGFSI*QK*FS*QSDGLLHPRWRDSSSRKHH*LMLEPE*HGACVX
Homology
[Close]
BLAST of Chy2G035400.1 vs. NCBI nr
Match: AYE66861.1 (hypothetical protein, partial [Solanum lycopersicum])

HSP 1 Score: 50.4 bits (119), Expect = 6.57e-06
Identity = 20/30 (66.67%), Postives = 23/30 (76.67%), Query Frame = 0 

Query: 45 QSDGLLHPRWRDSSSRKHH*LMLEPE*HGA 74
          ++  +LHPRWR SSSRKHH L L PE HGA
Sbjct: 54 EAASMLHPRWRKSSSRKHHLLTLSPELHGA 83

[Close]
BLAST of Chy2G035400.1 vs. NCBI nr
Match: KGN66299.1 (hypothetical protein Csa_007156 [Cucumis sativus])

HSP 1 Score: 45.4 bits (106), Expect = 4.93e-04
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 0 

Query: 1  MSLAAAPRKKLSHRGLGLRSSQLNVEQFLSSLYGFSI 37
          MSLAAAPRKKLS RGLGL SSQLN    LSS +  S+
Sbjct: 1  MSLAAAPRKKLSRRGLGLGSSQLNTR--LSSFFHPSV 35

The following BLAST results are available for this feature:
BLAST of Chy2G035400.1 vs.
Match NameE-valueIdentityDescription
BLAST of Chy2G035400.1 vs.
Match NameE-valueIdentityDescription
BLAST of Chy2G035400.1 vs. NCBI nr
Match NameE-valueIdentityDescription
AYE66861.16.57e-0666.67hypothetical protein, partial [Solanum lycopersicum][more]
KGN66299.14.93e-0470.27hypothetical protein Csa_007156 [Cucumis sativus][more]
BLAST of Chy2G035400.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Chy2G035400Chy2G035400gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy2G035400.1.exon3Chy2G035400.1.exon3exon
Chy2G035400.1.exon2Chy2G035400.1.exon2exon
Chy2G035400.1.exon1Chy2G035400.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy2G035400.1.cds3Chy2G035400.1.cds3CDS
Chy2G035400.1.cds2Chy2G035400.1.cds2CDS
Chy2G035400.1.cds1Chy2G035400.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Chy2G035400.1Chy2G035400.1-proteinpolypeptide