Chy1G013170.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy1G013170.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Plant transposase
Location	chrH01: 16891795 .. 16892106 (-)
Sequence length	312
RNA-Seq Expression	Chy1G013170.1
Synteny	Chy1G013170.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTAAATTACCCATTGAAGAGGTTCAACCTGAGCAGGAGGAAAATGAAAATGTGGATTGTGGGGAAGTTCATACCAAGGAAGTAGGTCCTAAAAAGACAAGAGGTAGGACAAAGATGAAAACAATAGCGATGGAGCCTGAAATAAAAGTAAATGAAAGGTACAACAAATATGGACAACCTATTGGAGAAACATTAGTTGGGTTGTCCTCATTTTTGGGTACACTGGTTAGAGAAGTGGTGCCAGTGAATGTTGAAACTTGGAAGAAACTTTCTACTCAACAAAAAGAAATATTGTGGCATTCTATTCAA

mRNA sequence

ATGCGTAAATTACCCATTGAAGAGGTTCAACCTGAGCAGGAGGAAAATGAAAATGTGGATTGTGGGGAAGTTCATACCAAGGAAGTAGGTCCTAAAAAGACAAGAGGTAGGACAAAGATGAAAACAATAGCGATGGAGCCTGAAATAAAAGTAAATGAAAGGTACAACAAATATGGACAACCTATTGGAGAAACATTAGTTGGGTTGTCCTCATTTTTGGGTACACTGGTTAGAGAAGTGGTGCCAGTGAATGTTGAAACTTGGAAGAAACTTTCTACTCAACAAAAAGAAATATTGTGGCATTCTATTCAA

Coding sequence (CDS)

ATGCGTAAATTACCCATTGAAGAGGTTCAACCTGAGCAGGAGGAAAATGAAAATGTGGATTGTGGGGAAGTTCATACCAAGGAAGTAGGTCCTAAAAAGACAAGAGGTAGGACAAAGATGAAAACAATAGCGATGGAGCCTGAAATAAAAGTAAATGAAAGGTACAACAAATATGGACAACCTATTGGAGAAACATTAGTTGGGTTGTCCTCATTTTTGGGTACACTGGTTAGAGAAGTGGTGCCAGTGAATGTTGAAACTTGGAAGAAACTTTCTACTCAACAAAAAGAAATATTGTGGCATTCTATTCAA

Protein sequence

MRKLPIEEVQPEQEENENVDCGEVHTKEVGPKKTRGRTKMKTIAMEPEIKVNERYNKYGQPIGETLVGLSSFLGTLVREVVPVNVETWKKLSTQQKEILWHSIQ

Homology

[Close]

BLAST of Chy1G013170.1 vs. ExPASy TrEMBL
Match: A0A5A7UBP2 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2606G00210 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 8.0e-41
Identity = 86/104 (82.69%), Postives = 96/104 (92.31%), Query Frame = 0


Query: 1   MRKLPIEEVQPEQEENENVDCGEVHTKEVGPKKTRGRTKMKTIAMEPEIKVNERYNKYGQ 60
           +RKLP+EEV+ + EENENVDC EVHTKE  PKKTRGRTKM+TIAMEPE+K++ RYN YGQ
Sbjct: 75  VRKLPVEEVESQLEENENVDCEEVHTKEPSPKKTRGRTKMQTIAMEPEMKLDIRYNGYGQ 134

Query: 61  PIGETLVGLSSFLGTLVREVVPVNVETWKKLSTQQKEILWHSIQ 105
           PIGET VGLSSFLGTLVREVVPVNVETWKK+ST+QKEILWHSIQ
Sbjct: 135 PIGETSVGLSSFLGTLVREVVPVNVETWKKISTRQKEILWHSIQ 178

[Close]

BLAST of Chy1G013170.1 vs. ExPASy TrEMBL
Match: A0A5A7SRN7 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00120 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 8.0e-41
Identity = 86/104 (82.69%), Postives = 96/104 (92.31%), Query Frame = 0


Query: 1   MRKLPIEEVQPEQEENENVDCGEVHTKEVGPKKTRGRTKMKTIAMEPEIKVNERYNKYGQ 60
           +RKLP+EEV+ + EENENVDC EVHTKE  PKKTRGRTKM+TIAMEPE+K++ RYN YGQ
Sbjct: 75  VRKLPVEEVESQLEENENVDCEEVHTKEPSPKKTRGRTKMQTIAMEPEMKLDIRYNGYGQ 134

Query: 61  PIGETLVGLSSFLGTLVREVVPVNVETWKKLSTQQKEILWHSIQ 105
           PIGET VGLSSFLGTLVREVVPVNVETWKK+ST+QKEILWHSIQ
Sbjct: 135 PIGETSVGLSSFLGTLVREVVPVNVETWKKISTRQKEILWHSIQ 178

[Close]

BLAST of Chy1G013170.1 vs. ExPASy TrEMBL
Match: A0A5A7TLJ2 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G003690 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 8.0e-41
Identity = 86/104 (82.69%), Postives = 96/104 (92.31%), Query Frame = 0


Query: 1   MRKLPIEEVQPEQEENENVDCGEVHTKEVGPKKTRGRTKMKTIAMEPEIKVNERYNKYGQ 60
           +RKLP+EEV+ + EENENVDC EVHTKE  PKKTRGRTKM+TIAMEPE+K++ RYN YGQ
Sbjct: 75  VRKLPVEEVESQLEENENVDCEEVHTKEPSPKKTRGRTKMQTIAMEPEMKLDIRYNGYGQ 134

Query: 61  PIGETLVGLSSFLGTLVREVVPVNVETWKKLSTQQKEILWHSIQ 105
           PIGET VGLSSFLGTLVREVVPVNVETWKK+ST+QKEILWHSIQ
Sbjct: 135 PIGETSVGLSSFLGTLVREVVPVNVETWKKISTRQKEILWHSIQ 178

[Close]

BLAST of Chy1G013170.1 vs. ExPASy TrEMBL
Match: A0A5A7TIU1 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G002550 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.1e-40
Identity = 85/104 (81.73%), Postives = 96/104 (92.31%), Query Frame = 0


Query: 1   MRKLPIEEVQPEQEENENVDCGEVHTKEVGPKKTRGRTKMKTIAMEPEIKVNERYNKYGQ 60
           +RKLP+EEV+ + EENENVDC EVHTKE  PKKTRGRTKM+TIAMEPE+K++ RYN YGQ
Sbjct: 75  VRKLPVEEVESQLEENENVDCEEVHTKEPSPKKTRGRTKMQTIAMEPEMKLDIRYNGYGQ 134

Query: 61  PIGETLVGLSSFLGTLVREVVPVNVETWKKLSTQQKEILWHSIQ 105
           PIGET VGLSSFLGTLVREVVPVN+ETWKK+ST+QKEILWHSIQ
Sbjct: 135 PIGETSVGLSSFLGTLVREVVPVNIETWKKISTRQKEILWHSIQ 178

[Close]

BLAST of Chy1G013170.1 vs. ExPASy TrEMBL
Match: A0A5A7UI65 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11091G00020 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.4e-39
Identity = 83/104 (79.81%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 1   MRKLPIEEVQPEQEENENVDCGEVHTKEVGPKKTRGRTKMKTIAMEPEIKVNERYNKYGQ 60
           +RKLP+E+V+ + EENENVDC EVHTKE  PKKTRG  KM+TIAMEPE+K++ RYN YGQ
Sbjct: 75  VRKLPVEKVESQLEENENVDCEEVHTKEPSPKKTRGHMKMQTIAMEPEMKLDIRYNGYGQ 134

Query: 61  PIGETLVGLSSFLGTLVREVVPVNVETWKKLSTQQKEILWHSIQ 105
           PIGET VGLSSFLGTLVREVVPVNVETWKK+ST+QKEILWHSIQ
Sbjct: 135 PIGETSVGLSSFLGTLVREVVPVNVETWKKISTRQKEILWHSIQ 178

[Close]

BLAST of Chy1G013170.1 vs. NCBI nr
Match: KAE8646022.1 (hypothetical protein Csa_023837, partial [Cucumis sativus])

HSP 1 Score: 171 bits (433), Expect = 4.98e-53
Identity = 85/96 (88.54%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 1   MRKLPIEEVQPEQEENENVDCGEVHTKEVGPKKTRGRTKMKTIAMEPEIKVNERYNKYGQ 60
           MRKLPIEEVQP+QEENENVDC EVHTKE+GPKK RGRTKMK IAMEPE+KVN RYNKYGQ
Sbjct: 7   MRKLPIEEVQPKQEENENVDCEEVHTKEIGPKKKRGRTKMKIIAMEPEMKVNVRYNKYGQ 66

Query: 61  PIGETLVGLSSFLGTLVREVVPVNVETWKKLSTQQK 96
           PIGET VGLSSF GTLVREVVPVNVE+WKKLST+QK
Sbjct: 67  PIGETSVGLSSFFGTLVREVVPVNVESWKKLSTRQK 102

[Close]

BLAST of Chy1G013170.1 vs. NCBI nr
Match: KAA0041269.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 174 bits (441), Expect = 6.35e-52
Identity = 85/104 (81.73%), Postives = 96/104 (92.31%), Query Frame = 0


Query: 1   MRKLPIEEVQPEQEENENVDCGEVHTKEVGPKKTRGRTKMKTIAMEPEIKVNERYNKYGQ 60
           +RKLP+EEV+ + EENENVDC EVHTKE  PKKTRGRTKM+TIAMEPE+K++ RYN YGQ
Sbjct: 75  VRKLPVEEVESQLEENENVDCEEVHTKEPSPKKTRGRTKMQTIAMEPEMKLDIRYNGYGQ 134

Query: 61  PIGETLVGLSSFLGTLVREVVPVNVETWKKLSTQQKEILWHSIQ 104
           PIGET VGLSSFLGTLVREVVPVN+ETWKK+ST+QKEILWHSIQ
Sbjct: 135 PIGETSVGLSSFLGTLVREVVPVNIETWKKISTRQKEILWHSIQ 178

[Close]

BLAST of Chy1G013170.1 vs. NCBI nr
Match: KAA0051001.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 174 bits (442), Expect = 5.33e-50
Identity = 86/104 (82.69%), Postives = 96/104 (92.31%), Query Frame = 0


Query: 1   MRKLPIEEVQPEQEENENVDCGEVHTKEVGPKKTRGRTKMKTIAMEPEIKVNERYNKYGQ 60
           +RKLP+EEV+ + EENENVDC EVHTKE  PKKTRGRTKM+TIAMEPE+K++ RYN YGQ
Sbjct: 75  VRKLPVEEVESQLEENENVDCEEVHTKEPSPKKTRGRTKMQTIAMEPEMKLDIRYNGYGQ 134

Query: 61  PIGETLVGLSSFLGTLVREVVPVNVETWKKLSTQQKEILWHSIQ 104
           PIGET VGLSSFLGTLVREVVPVNVETWKK+ST+QKEILWHSIQ
Sbjct: 135 PIGETSVGLSSFLGTLVREVVPVNVETWKKISTRQKEILWHSIQ 178

[Close]

BLAST of Chy1G013170.1 vs. NCBI nr
Match: KAA0032201.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 174 bits (442), Expect = 9.93e-50
Identity = 86/104 (82.69%), Postives = 96/104 (92.31%), Query Frame = 0


Query: 1   MRKLPIEEVQPEQEENENVDCGEVHTKEVGPKKTRGRTKMKTIAMEPEIKVNERYNKYGQ 60
           +RKLP+EEV+ + EENENVDC EVHTKE  PKKTRGRTKM+TIAMEPE+K++ RYN YGQ
Sbjct: 75  VRKLPVEEVESQLEENENVDCEEVHTKEPSPKKTRGRTKMQTIAMEPEMKLDIRYNGYGQ 134

Query: 61  PIGETLVGLSSFLGTLVREVVPVNVETWKKLSTQQKEILWHSIQ 104
           PIGET VGLSSFLGTLVREVVPVNVETWKK+ST+QKEILWHSIQ
Sbjct: 135 PIGETSVGLSSFLGTLVREVVPVNVETWKKISTRQKEILWHSIQ 178

[Close]

BLAST of Chy1G013170.1 vs. NCBI nr
Match: KAA0053956.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 169 bits (427), Expect = 1.03e-49
Identity = 83/104 (79.81%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 1   MRKLPIEEVQPEQEENENVDCGEVHTKEVGPKKTRGRTKMKTIAMEPEIKVNERYNKYGQ 60
           +RKLP+E+V+ + EENENVDC EVHTKE  PKKTRG  KM+TIAMEPE+K++ RYN YGQ
Sbjct: 75  VRKLPVEKVESQLEENENVDCEEVHTKEPSPKKTRGHMKMQTIAMEPEMKLDIRYNGYGQ 134

Query: 61  PIGETLVGLSSFLGTLVREVVPVNVETWKKLSTQQKEILWHSIQ 104
           PIGET VGLSSFLGTLVREVVPVNVETWKK+ST+QKEILWHSIQ
Sbjct: 135 PIGETSVGLSSFLGTLVREVVPVNVETWKKISTRQKEILWHSIQ 178

The following BLAST results are available for this feature:

BLAST of Chy1G013170.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy1G013170.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UBP2	8.0e-41	82.69	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2606G0...	[more]
A0A5A7SRN7	8.0e-41	82.69	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00...	[more]
A0A5A7TLJ2	8.0e-41	82.69	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G003...	[more]
A0A5A7TIU1	1.1e-40	81.73	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00...	[more]
A0A5A7UI65	4.4e-39	79.81	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11091G...	[more]

BLAST of Chy1G013170.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646022.1	4.98e-53	88.54	hypothetical protein Csa_023837, partial [Cucumis sativus]	[more]
KAA0041269.1	6.35e-52	81.73	Plant transposase [Cucumis melo var. makuwa]	[more]
KAA0051001.1	5.33e-50	82.69	Plant transposase [Cucumis melo var. makuwa]	[more]
KAA0032201.1	9.93e-50	82.69	Plant transposase [Cucumis melo var. makuwa]	[more]
KAA0053956.1	1.03e-49	79.81	Plant transposase [Cucumis melo var. makuwa]	[more]

BLAST of Chy1G013170.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PANTHER	PTHR33144	OS10G0409366 PROTEIN-RELATED	coord: 14..104
None	No IPR available	PANTHER	PTHR33144:SF27	SUBFAMILY NOT NAMED	coord: 14..104

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy1G013170	Chy1G013170	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy1G013170.1.exon1	Chy1G013170.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy1G013170.1.cds1	Chy1G013170.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy1G013170.1	Chy1G013170.1-protein	polypeptide