Chy11G195670.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy11G195670.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	DNA-directed RNA polymerases II and IV subunit 5A-like
Location	chrH11: 13874150 .. 13876347 (+)
Sequence length	624
RNA-Seq Expression	Chy11G195670.1
Synteny	Chy11G195670.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTTCCCAGAAGAAGAAATCACCAAACTCTTTAGAGTCCGAAAAACTGTGTTGCAGATGTTGAAAGACAGAGGCTATTTTGTTGGAGATTTCGAGCTTGATATGTCTAAAGCACAATTTAAGAATAAGTTTGGTGAGAACATGAAAAGAGAAGATCTGGTTATCAATAAATCCAAGAGAAATAATAGCTCTGATCAGGTATAGTCTCATACTACACAATGACAATCTCATTTATGTAGATAACTATTTAGTTTTCGATTTTTAGTTTCTGAAGATTGTGTTTGATGCTCCCAACTTATTTACTATGATTTTCATTTTCGTAGTGTAAAACATTGAATTCAGAGCAAGTTTCAATAGAAAAAGGTTTTTAAAAACTACGATTCTTTAGTTTTCAAAACTTGGCTTAAATTTTGAAGACTCACATAAAAAGAAGATAACAAAACATAGAAATCAATAGGTTTAAGTAATATTTACATGCTTAATTTTCAAGAACCAAAAGCTCAGGGTGTGTTGCCCAAAGAGTTGTGAAATATAAGGTAAGAGCTGAGAAGTAGTAGTTGTGAACTCCACTCCTTGTTTGGGTCGAGGAGTTGGTGGATCCTACTCCCAAATAACTTCAATTTTATATGGTAGACCTCAAAGTTCATAACTCTCTGAATTTCATTTCTCTTAAGTCCTCAATATTTCATCCCGTGACCCAAACACTTGTCTGGCTCATCAACTTCTAAGTTAGTGTTAAATATTTCAACCTTAATGGTTTTCACTACCAAAGTTTCACATTTATTAAGGAACTCCGCCTTATAATTCTGCAACCCCAAACACATGGTTAATAACTATAACATGTTCACTTCAAACTTCCTAACTCAACTTAGCACCCCCAACACCCAATTGTTATAAAACAGGGTCTCATTTATTGTGTACTTAAACATGTTTAAACTTTACCTTAATAAAGGGTTGCAGTAAGTTTCCTCGGAAGAAGTTTCTATTTAAGTCATTCTCAAGTACTGTTACTGTTTGACATGGAAAATAGTTAACTATCGAAAAATATTTACCACATTTATATAAAGTTTGGTTATAGGGATGCACAGGTTATTTGTTAACCCTTTTATTTGTTTCCCTCTTTTGATTTATGACTCTTTTACACAGATATATGTTTTCTTTCCTGAAGAGGCGAAGGTTGGTATAAAGATAGTGGAAACTTATGTAGGTCGTATGAAATCAGAGAATGTTTTCAGAGCAATATTTGTTGTTCAACTGAATTTGACCCCCTTTGCCCGAAATAAAATCGCCGAATTATCGGCTACCAAACTCCATTTGGAGGTTTTCCAGGTAAAAGTTAAATCTCTTATAGTTTTTGGAGCCTTTTAATGTTGAATAGATTATTTTAATATTATCACATGCTACAAATTTAACGAGAACTAGAGAGGATTTTCTATTCTCCTATCCCAAAACCAGTTCTCTCGTACTTTTGTTGTCTCTCACAACAACAATGATGGGGGAGTGGGGGGAAGAATGGTGACGTTAGTTTGTAATTACTTATGTGATTTTCATTTTCCATATAATAATGTCTTGCCTACCTTCTTATTTTACAGACGTTAACGTTTACCTCTGTCATTTTTTTATGCAGGAAACAGAATTGATGGTTAACATCAAAGAGCATGTTCTCATTCCCGAGCACCAGTCACTCACAGATGAAGAGAAGAAAACGTTGTTGGGAAGGTATACGGTGAAAGAAACACAAGTGAGTTTCATTTTATTTGATTTTATTTTCTTGAAATACAACAATATTGTGAGAATTATGTTCCATAAAATATGTTGAAATAACTTTGGTAGCTTTGGCCCGTGGTGAATAAGATTTTTTGTAAATGATAAAGATATTAGTAAATGAGTTCAAACCATGATGATTGCATACCTAAAATTTAATTCCCTACACGTTACTCTAACAATCAAATATAGTAATATTGGACGGTTGTTTTATTAGCATAGTTAAGATGCGCTCAAGTTGGCTCTAACACTCTTGAAAATTGGTATATGTTAGTTTTTAACAAACATTTTGCATTTTGTCTCAGCTACCTCGCATGCAAGTTACCGATCCAATTTCTAGATATTATGGACTGAAGCGTGGACATGTAGTGAAGATCATCCGACCAAGCGAAACTGCTGGAAGATATGTGACTTATAGATATGTTGTTTGA

mRNA sequence

ATGGTGTTCCCAGAAGAAGAAATCACCAAACTCTTTAGAGTCCGAAAAACTGTGTTGCAGATGTTGAAAGACAGAGGCTATTTTGTTGGAGATTTCGAGCTTGATATGTCTAAAGCACAATTTAAGAATAAGTTTGGTGAGAACATGAAAAGAGAAGATCTGGTTATCAATAAATCCAAGAGAAATAATAGCTCTGATCAGATATATGTTTTCTTTCCTGAAGAGGCGAAGGTTGGTATAAAGATAGTGGAAACTTATGTAGGTCGTATGAAATCAGAGAATGTTTTCAGAGCAATATTTGTTGTTCAACTGAATTTGACCCCCTTTGCCCGAAATAAAATCGCCGAATTATCGGCTACCAAACTCCATTTGGAGGTTTTCCAGGAAACAGAATTGATGGTTAACATCAAAGAGCATGTTCTCATTCCCGAGCACCAGTCACTCACAGATGAAGAGAAGAAAACGTTGTTGGGAAGGTATACGGTGAAAGAAACACAACTACCTCGCATGCAAGTTACCGATCCAATTTCTAGATATTATGGACTGAAGCGTGGACATGTAGTGAAGATCATCCGACCAAGCGAAACTGCTGGAAGATATGTGACTTATAGATATGTTGTTTGA

Coding sequence (CDS)

ATGGTGTTCCCAGAAGAAGAAATCACCAAACTCTTTAGAGTCCGAAAAACTGTGTTGCAGATGTTGAAAGACAGAGGCTATTTTGTTGGAGATTTCGAGCTTGATATGTCTAAAGCACAATTTAAGAATAAGTTTGGTGAGAACATGAAAAGAGAAGATCTGGTTATCAATAAATCCAAGAGAAATAATAGCTCTGATCAGATATATGTTTTCTTTCCTGAAGAGGCGAAGGTTGGTATAAAGATAGTGGAAACTTATGTAGGTCGTATGAAATCAGAGAATGTTTTCAGAGCAATATTTGTTGTTCAACTGAATTTGACCCCCTTTGCCCGAAATAAAATCGCCGAATTATCGGCTACCAAACTCCATTTGGAGGTTTTCCAGGAAACAGAATTGATGGTTAACATCAAAGAGCATGTTCTCATTCCCGAGCACCAGTCACTCACAGATGAAGAGAAGAAAACGTTGTTGGGAAGGTATACGGTGAAAGAAACACAACTACCTCGCATGCAAGTTACCGATCCAATTTCTAGATATTATGGACTGAAGCGTGGACATGTAGTGAAGATCATCCGACCAAGCGAAACTGCTGGAAGATATGTGACTTATAGATATGTTGTTTGA

Protein sequence

MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSKRNNSSDQIYVFFPEEAKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSATKLHLEVFQETELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYYGLKRGHVVKIIRPSETAGRYVTYRYVV*

Homology

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BLAST of Chy11G195670.1 vs. ExPASy Swiss-Prot
Match: O81098 (DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=3702 GN=NRPB5A PE=1 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 2.6e-80
Identity = 149/203 (73.40%), Postives = 178/203 (87.68%), Query Frame = 0


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSKRNNS 64
           EEE+ +L+R++KT++QML+DRGYF+ D EL M+K QF  K G+NMKREDLV  K+KRN++
Sbjct: 4   EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDN 63

Query: 65  SDQIYVFFPEEAKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSATKLHL 124
           SDQ+Y+FFP+EAKVG+K ++ Y  RMKSENVFRAI VVQ NLTPFAR  I+E+S +K HL
Sbjct: 64  SDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEIS-SKFHL 123

Query: 125 EVFQETELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYYGLKR 184
           EVFQE E++VNIKEHVL+PEHQ LT EEKKTLL RYTVKETQLPR+QVTDPI+RY+GLKR
Sbjct: 124 EVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKR 183

Query: 185 GHVVKIIRPSETAGRYVTYRYVV 208
           G VVKIIRPSETAGRYVTYRYVV
Sbjct: 184 GQVVKIIRPSETAGRYVTYRYVV 205

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BLAST of Chy11G195670.1 vs. ExPASy Swiss-Prot
Match: A8XGH1 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis briggsae OX=6238 GN=rpb-5 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.1e-51
Identity = 110/212 (51.89%), Postives = 144/212 (67.92%), Query Frame = 0


Query: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMK-----REDLV 60
           M   E E  +L+R+RKTVLQM+ DRGY V   ELD     FK  FG+        R DL 
Sbjct: 1   MADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLT 60

Query: 61  INKSKRNNSSDQIYVFFPEEAKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIA 120
           I  +  ++ +DQ++VFFPE+ K+GIK ++    +M+ +N+ RAI VVQ  +TP A+  I 
Sbjct: 61  ILVAHNDDPADQMFVFFPEDTKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120

Query: 121 ELSATKLHLEVFQETELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDP 180
           ++ A K  LE F E ELMVNI EH L+PEH  +T EEK  LL RY +K++QLPR+Q  DP
Sbjct: 121 DM-APKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDP 180

Query: 181 ISRYYGLKRGHVVKIIRPSETAGRYVTYRYVV 208
           ++RY+GL+RG VVKIIRPSETAGRY+TYR VV
Sbjct: 181 VARYFGLRRGQVVKIIRPSETAGRYITYRLVV 211

[Close]

BLAST of Chy11G195670.1 vs. ExPASy Swiss-Prot
Match: Q9N5K2 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis elegans OX=6239 GN=rpb-5 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.1e-51
Identity = 110/212 (51.89%), Postives = 146/212 (68.87%), Query Frame = 0


Query: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMK-----REDLV 60
           M   E E  +L+R+RKTVLQM+ DRGY V   ELD     FK ++G+        R DL 
Sbjct: 1   MADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLT 60

Query: 61  INKSKRNNSSDQIYVFFPEEAKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIA 120
           I  +  ++ +DQ++VFFPE+AK+GIK ++    +M+ +N+ RAI VVQ  +TP A+  I 
Sbjct: 61  ILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120

Query: 121 ELSATKLHLEVFQETELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDP 180
           ++ A K  LE F E ELMVNI EH L+PEH  +T EEK  LL RY +K++QLPR+Q  DP
Sbjct: 121 DM-APKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDP 180

Query: 181 ISRYYGLKRGHVVKIIRPSETAGRYVTYRYVV 208
           ++RY+GL+RG VVKIIRPSETAGRY+TYR VV
Sbjct: 181 VARYFGLRRGQVVKIIRPSETAGRYITYRLVV 211

[Close]

BLAST of Chy11G195670.1 vs. ExPASy Swiss-Prot
Match: Q80UW8 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10090 GN=Polr2e PE=1 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.6e-51
Identity = 103/207 (49.76%), Postives = 146/207 (70.53%), Query Frame = 0


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGE-----NMKREDLVINKS 64
           EEE  +L+++RKT++Q+  DRGY V   ELD +  +FK +FG+       +R DL +  +
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNNSSDQIYVFFPEEAKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSA 124
             ++ +DQ++VFFPEE KVGIK ++ Y  RM+ EN+ RA+ VVQ  +TP A+  + ++ A
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDM-A 123

Query: 125 TKLHLEVFQETELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPISRY 184
            K  LE F + EL++NI EH L+PEH  +T EE   LL RY ++E+QLPR+Q  DP++RY
Sbjct: 124 PKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARY 183

Query: 185 YGLKRGHVVKIIRPSETAGRYVTYRYV 207
           +G+KRG VVKIIRPSETAGRY+TYR V
Sbjct: 184 FGIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Chy11G195670.1 vs. ExPASy Swiss-Prot
Match: B0BNE2 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus OX=10116 GN=Polr2e PE=2 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.6e-51
Identity = 103/207 (49.76%), Postives = 146/207 (70.53%), Query Frame = 0


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGE-----NMKREDLVINKS 64
           EEE  +L+++RKT++Q+  DRGY V   ELD +  +FK +FG+       +R DL +  +
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNNSSDQIYVFFPEEAKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSA 124
             ++ +DQ++VFFPEE KVGIK ++ Y  RM+ EN+ RA+ VVQ  +TP A+  + ++ A
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDM-A 123

Query: 125 TKLHLEVFQETELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPISRY 184
            K  LE F + EL++NI EH L+PEH  +T EE   LL RY ++E+QLPR+Q  DP++RY
Sbjct: 124 PKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARY 183

Query: 185 YGLKRGHVVKIIRPSETAGRYVTYRYV 207
           +G+KRG VVKIIRPSETAGRY+TYR V
Sbjct: 184 FGIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Chy11G195670.1 vs. ExPASy TrEMBL
Match: A0A0A0KF69 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G170410 PE=3 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 2.9e-106
Identity = 201/207 (97.10%), Postives = 205/207 (99.03%), Query Frame = 0


Query: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60
           MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSK QFKNKFGENMKREDLVINKSK
Sbjct: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSK 60

Query: 61  RNNSSDQIYVFFPEEAKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSAT 120
           RNNSSDQIYVFFPEE KVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELS++
Sbjct: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSS 120

Query: 121 KLHLEVFQETELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY 180
           KLHLEVFQETEL+VNIKEHVLIPEHQ+LTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY
Sbjct: 121 KLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY 180

Query: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 208
           GLKRGHVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of Chy11G195670.1 vs. ExPASy TrEMBL
Match: A0A5A7UJ12 (DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G003460 PE=3 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.1e-105
Identity = 201/207 (97.10%), Postives = 204/207 (98.55%), Query Frame = 0


Query: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60
           MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK
Sbjct: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60

Query: 61  RNNSSDQIYVFFPEEAKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSAT 120
           RNNSSDQIYVFFPEE KVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELS+T
Sbjct: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST 120

Query: 121 KLHLEVFQETELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY 180
           K+HLEVFQE ELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPI+RYY
Sbjct: 121 KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYY 180

Query: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 208
           GLKRG VVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of Chy11G195670.1 vs. ExPASy TrEMBL
Match: A0A1S3C2N2 (DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496327 PE=3 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.1e-105
Identity = 201/207 (97.10%), Postives = 204/207 (98.55%), Query Frame = 0


Query: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60
           MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK
Sbjct: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60

Query: 61  RNNSSDQIYVFFPEEAKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSAT 120
           RNNSSDQIYVFFPEE KVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELS+T
Sbjct: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST 120

Query: 121 KLHLEVFQETELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY 180
           K+HLEVFQE ELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPI+RYY
Sbjct: 121 KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYY 180

Query: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 208
           GLKRG VVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of Chy11G195670.1 vs. ExPASy TrEMBL
Match: A0A5D3DA58 (DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold519G00160 PE=3 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.5e-102
Identity = 201/223 (90.13%), Postives = 204/223 (91.48%), Query Frame = 0


Query: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60
           MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK
Sbjct: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60

Query: 61  RNNSSDQIYVFFPEEAKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSAT 120
           RNNSSDQIYVFFPEE KVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELS+T
Sbjct: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST 120

Query: 121 KLHLEVFQETELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQ-------------- 180
           K+HLEVFQE ELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQ              
Sbjct: 121 KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQVSFILFDLIFLKYK 180

Query: 181 --LPRMQVTDPISRYYGLKRGHVVKIIRPSETAGRYVTYRYVV 208
             LPRMQVTDPI+RYYGLKRG VVKIIRPSETAGRYVTYRYVV
Sbjct: 181 NILPRMQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 223

[Close]

BLAST of Chy11G195670.1 vs. ExPASy TrEMBL
Match: A0A1S3C358 (DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496327 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.5e-94
Identity = 181/187 (96.79%), Postives = 184/187 (98.40%), Query Frame = 0


Query: 21  MLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSKRNNSSDQIYVFFPEEAKVGI 80
           MLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSKRNNSSDQIYVFFPEE KVGI
Sbjct: 1   MLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSKRNNSSDQIYVFFPEEPKVGI 60

Query: 81  KIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSATKLHLEVFQETELMVNIKEHV 140
           KIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELS+TK+HLEVFQE ELMVNIKEHV
Sbjct: 61  KIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSTKVHLEVFQEAELMVNIKEHV 120

Query: 141 LIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYYGLKRGHVVKIIRPSETAGRY 200
           LIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPI+RYYGLKRG VVKIIRPSETAGRY
Sbjct: 121 LIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYYGLKRGQVVKIIRPSETAGRY 180

Query: 201 VTYRYVV 208
           VTYRYVV
Sbjct: 181 VTYRYVV 187

[Close]

BLAST of Chy11G195670.1 vs. NCBI nr
Match: XP_004143184.1 (DNA-directed RNA polymerases II and IV subunit 5A [Cucumis sativus] >KGN47027.1 hypothetical protein Csa_020872 [Cucumis sativus])

HSP 1 Score: 394 bits (1013), Expect = 4.46e-138
Identity = 201/207 (97.10%), Postives = 205/207 (99.03%), Query Frame = 0


Query: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60
           MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSK QFKNKFGENMKREDLVINKSK
Sbjct: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSK 60

Query: 61  RNNSSDQIYVFFPEEAKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSAT 120
           RNNSSDQIYVFFPEE KVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELS++
Sbjct: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSS 120

Query: 121 KLHLEVFQETELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY 180
           KLHLEVFQETEL+VNIKEHVLIPEHQ+LTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY
Sbjct: 121 KLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY 180

Query: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 207
           GLKRGHVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of Chy11G195670.1 vs. NCBI nr
Match: XP_008456369.1 (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 [Cucumis melo] >KAA0054557.1 DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 392 bits (1008), Expect = 2.58e-137
Identity = 201/207 (97.10%), Postives = 204/207 (98.55%), Query Frame = 0


Query: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60
           MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK
Sbjct: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60

Query: 61  RNNSSDQIYVFFPEEAKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSAT 120
           RNNSSDQIYVFFPEE KVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELS+T
Sbjct: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST 120

Query: 121 KLHLEVFQETELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY 180
           K+HLEVFQE ELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPI+RYY
Sbjct: 121 KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYY 180

Query: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 207
           GLKRG VVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of Chy11G195670.1 vs. NCBI nr
Match: TYK20394.1 (DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 382 bits (981), Expect = 5.96e-133
Identity = 201/223 (90.13%), Postives = 204/223 (91.48%), Query Frame = 0


Query: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60
           MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK
Sbjct: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60

Query: 61  RNNSSDQIYVFFPEEAKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSAT 120
           RNNSSDQIYVFFPEE KVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELS+T
Sbjct: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST 120

Query: 121 KLHLEVFQETELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQ-------------- 180
           K+HLEVFQE ELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQ              
Sbjct: 121 KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQVSFILFDLIFLKYK 180

Query: 181 --LPRMQVTDPISRYYGLKRGHVVKIIRPSETAGRYVTYRYVV 207
             LPRMQVTDPI+RYYGLKRG VVKIIRPSETAGRYVTYRYVV
Sbjct: 181 NILPRMQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 223

[Close]

BLAST of Chy11G195670.1 vs. NCBI nr
Match: XP_008456371.1 (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 [Cucumis melo])

HSP 1 Score: 355 bits (912), Expect = 5.46e-123
Identity = 181/187 (96.79%), Postives = 184/187 (98.40%), Query Frame = 0


Query: 21  MLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSKRNNSSDQIYVFFPEEAKVGI 80
           MLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSKRNNSSDQIYVFFPEE KVGI
Sbjct: 1   MLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSKRNNSSDQIYVFFPEEPKVGI 60

Query: 81  KIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSATKLHLEVFQETELMVNIKEHV 140
           KIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELS+TK+HLEVFQE ELMVNIKEHV
Sbjct: 61  KIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSTKVHLEVFQEAELMVNIKEHV 120

Query: 141 LIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYYGLKRGHVVKIIRPSETAGRY 200
           LIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPI+RYYGLKRG VVKIIRPSETAGRY
Sbjct: 121 LIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYYGLKRGQVVKIIRPSETAGRY 180

Query: 201 VTYRYVV 207
           VTYRYVV
Sbjct: 181 VTYRYVV 187

[Close]

BLAST of Chy11G195670.1 vs. NCBI nr
Match: XP_042963212.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Carya illinoinensis] >XP_042963221.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Carya illinoinensis] >KAG2720087.1 hypothetical protein I3760_02G019400 [Carya illinoinensis] >KAG6663327.1 hypothetical protein CIPAW_02G018700 [Carya illinoinensis] >KAG6725179.1 hypothetical protein I3842_02G019000 [Carya illinoinensis] >KAG6725180.1 hypothetical protein I3842_02G019000 [Carya illinoinensis])

HSP 1 Score: 337 bits (865), Expect = 1.55e-115
Identity = 168/207 (81.16%), Postives = 189/207 (91.30%), Query Frame = 0


Query: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60
           M   EEEIT+LFR+R+TV+QMLKDRGYFVGDFE+DM+K QFKNK+GE+MKREDLVINKSK
Sbjct: 1   MTLSEEEITRLFRIRRTVMQMLKDRGYFVGDFEIDMTKEQFKNKYGESMKREDLVINKSK 60

Query: 61  RNNSSDQIYVFFPEEAKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSAT 120
           RNNSSDQIY+FFPEE KVG+K ++TY  RMKSENVFRAI VVQ NLTPFAR+ I E+S T
Sbjct: 61  RNNSSDQIYIFFPEEQKVGVKTMKTYSQRMKSENVFRAILVVQQNLTPFARSSINEIS-T 120

Query: 121 KLHLEVFQETELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY 180
           K HLEVFQE EL++NIKEHVL+PEHQ LT+EEKKTLL RYTVKETQLPRMQVTDP++RYY
Sbjct: 121 KFHLEVFQEAELLINIKEHVLVPEHQVLTNEEKKTLLERYTVKETQLPRMQVTDPVARYY 180

Query: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 207
           GLKRG VVKIIRPSETAGRY+TYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYITYRYVV 206

[Close]

BLAST of Chy11G195670.1 vs. TAIR 10
Match: AT3G22320.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 299.7 bits (766), Expect = 1.9e-81
Identity = 149/203 (73.40%), Postives = 178/203 (87.68%), Query Frame = 0


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSKRNNS 64
           EEE+ +L+R++KT++QML+DRGYF+ D EL M+K QF  K G+NMKREDLV  K+KRN++
Sbjct: 4   EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDN 63

Query: 65  SDQIYVFFPEEAKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSATKLHL 124
           SDQ+Y+FFP+EAKVG+K ++ Y  RMKSENVFRAI VVQ NLTPFAR  I+E+S +K HL
Sbjct: 64  SDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEIS-SKFHL 123

Query: 125 EVFQETELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYYGLKR 184
           EVFQE E++VNIKEHVL+PEHQ LT EEKKTLL RYTVKETQLPR+QVTDPI+RY+GLKR
Sbjct: 124 EVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKR 183

Query: 185 GHVVKIIRPSETAGRYVTYRYVV 208
           G VVKIIRPSETAGRYVTYRYVV
Sbjct: 184 GQVVKIIRPSETAGRYVTYRYVV 205

[Close]

BLAST of Chy11G195670.1 vs. TAIR 10
Match: AT5G57980.1 (RNA polymerase II fifth largest subunit, C )

HSP 1 Score: 177.6 bits (449), Expect = 1.1e-44
Identity = 95/207 (45.89%), Postives = 144/207 (69.57%), Query Frame = 0


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENM---KREDLVINKSKR 64
           ++EIT++F+VR+TVLQML+DRGY + + +L++ + +F  +F + M    +E L ++ +K 
Sbjct: 5   DDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKG 64

Query: 65  NNSSDQIYVFFPEEAKVGIKIVETYVG-RMKSENVFRAIFVVQLNLTPFARNKIAELSAT 124
            N +D+IYVF+PE  KVG+ +++  V  +M+ + V R I VV + +T  AR  ++EL+  
Sbjct: 65  PNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSELN-K 124

Query: 125 KLHLEVFQETELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY 184
            L +EVF+E EL+ NI EH L+ ++  L D+ KK LL  YTV++TQLPR+ VTDP++RYY
Sbjct: 125 MLTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRILVTDPLARYY 184

Query: 185 GLKRGHVVKIIRPSETAGRYVTYRYVV 208
           GLKRG VVKI R   T+  Y TYR+ V
Sbjct: 185 GLKRGQVVKIRRSDATSLDYYTYRFAV 210

[Close]

BLAST of Chy11G195670.1 vs. TAIR 10
Match: AT2G41340.1 (RNA polymerase II fifth largest subunit, D )

HSP 1 Score: 127.5 bits (319), Expect = 1.3e-29
Identity = 78/201 (38.81%), Postives = 124/201 (61.69%), Query Frame = 0


Query: 7   EITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSKRNNSSD 66
           E  K +  R+T ++ML+DRGY V D ++++S  QF+  +GE+   + L I+   R +SS 
Sbjct: 20  ECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFDSSK 79

Query: 67  QIYVFFPEEAKVGIKIVETYVGRMKS-ENVFRAIFVVQLNLTPFARNKIAELSATKLHLE 126
           +I V F     V +  +      + S EN+   I V+Q ++T  A  K  EL + K  +E
Sbjct: 80  KISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQAL-KAVELFSFK--VE 139

Query: 127 VFQETELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYYGLKRG 186
           +F+ T+L+VN+ +HVL P+HQ L D+EK++LL +++++E QLPR+   DPI RYYGL+ G
Sbjct: 140 LFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGLETG 199

Query: 187 HVVKIIRPSETAGRYVTYRYV 207
            V+K+    E +  +VTYR V
Sbjct: 200 QVMKVTYKDELSESHVTYRCV 217

[Close]

BLAST of Chy11G195670.1 vs. TAIR 10
Match: AT3G57080.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 122.1 bits (305), Expect = 5.3e-28
Identity = 72/201 (35.82%), Postives = 116/201 (57.71%), Query Frame = 0


Query: 6   EEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSKRNNSS 65
           EE  + +  R+  LQML+DRGY V D ++++S   F+  +GE    + L I+   R++S+
Sbjct: 23  EESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRSDST 82

Query: 66  DQIYVFFPEEAKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSATKLHLE 125
            ++ + F   + V +  + + V  + S+     + +V  N       K  EL + K  +E
Sbjct: 83  KKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFSFK--VE 142

Query: 126 VFQETELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYYGLKRG 185
           +FQ T+L+VNI +H L P+HQ L DEEK TLL +++++E QLPR+   D I RYYGL++G
Sbjct: 143 IFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYGLEKG 202

Query: 186 HVVKIIRPSETAGRYVTYRYV 207
            VVK+    E    +V +R V
Sbjct: 203 QVVKVNYRGELTESHVAFRCV 221

[Close]

BLAST of Chy11G195670.1 vs. TAIR 10
Match: AT3G54490.1 (RNA polymerase II fifth largest subunit, E )

HSP 1 Score: 106.7 bits (265), Expect = 2.3e-23
Identity = 66/202 (32.67%), Postives = 109/202 (53.96%), Query Frame = 0


Query: 7   EITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSKRNNSSD 66
           E  + +  R T  +ML+DRGY V + EL ++ ++F++ FGE  + E L I    R++   
Sbjct: 35  ESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLRICVPLRSDPKK 94

Query: 67  QIYVFFPEEAKVGIKIVET-YVGRMKSENVFRAIFVVQLNLTPFARNKIAELSATKLHLE 126
           +I V F     + +K V   ++    +  +   I V+Q  +  FA+  +     T   +E
Sbjct: 95  KILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALTTFPFT---VE 154

Query: 127 VFQETELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYYGLKRG 186
            F   +L+VNI +H+  P+ + L  EEK+ LL ++ +++ QLP +Q  D   RYYGLK+ 
Sbjct: 155 TFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKK 214

Query: 187 HVVKIIRPSETAGRYVTYRYVV 208
            VVKI    E  G +VTYR ++
Sbjct: 215 QVVKITYSKEPVGDFVTYRCII 233

The following BLAST results are available for this feature:

BLAST of Chy11G195670.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81098	2.6e-80	73.40	DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=370...	[more]
A8XGH1	1.1e-51	51.89	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis bri...	[more]
Q9N5K2	1.1e-51	51.89	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis ele...	[more]
Q80UW8	2.6e-51	49.76	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10...	[more]
B0BNE2	2.6e-51	49.76	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus ...	[more]

BLAST of Chy11G195670.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KF69	2.9e-106	97.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G170410 PE=3 SV=1	[more]
A0A5A7UJ12	1.1e-105	97.10	DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 OS=Cucumis mel...	[more]
A0A1S3C2N2	1.1e-105	97.10	DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 OS=Cucumis mel...	[more]
A0A5D3DA58	1.5e-102	90.13	DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 OS=Cucumis mel...	[more]
A0A1S3C358	1.5e-94	96.79	DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 OS=Cucumis mel...	[more]

BLAST of Chy11G195670.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143184.1	4.46e-138	97.10	DNA-directed RNA polymerases II and IV subunit 5A [Cucumis sativus] >KGN47027.1 ...	[more]
XP_008456369.1	2.58e-137	97.10	PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 [Cu...	[more]
TYK20394.1	5.96e-133	90.13	DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 [Cucumis melo ...	[more]
XP_008456371.1	5.46e-123	96.79	PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 [Cu...	[more]
XP_042963212.1	1.55e-115	81.16	DNA-directed RNA polymerases II and IV subunit 5A-like [Carya illinoinensis] >XP...	[more]

BLAST of Chy11G195670.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22320.1	1.9e-81	73.40	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT5G57980.1	1.1e-44	45.89	RNA polymerase II fifth largest subunit, C	[more]
AT2G41340.1	1.3e-29	38.81	RNA polymerase II fifth largest subunit, D	[more]
AT3G57080.1	5.3e-28	35.82	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT3G54490.1	2.3e-23	32.67	RNA polymerase II fifth largest subunit, E	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014381	DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus	PIRSF	PIRSF000747	RPB5	coord: 2..207 e-value: 6.3E-82 score: 272.0
IPR005571	RNA polymerase, Rpb5, N-terminal	PFAM	PF03871	RNA_pol_Rpb5_N	coord: 5..90 e-value: 7.6E-30 score: 103.4
IPR035913	RPB5-like RNA polymerase subunit superfamily	GENE3D	3.90.940.20		coord: 132..207 e-value: 4.9E-32 score: 111.4
IPR035913	RPB5-like RNA polymerase subunit superfamily	SUPERFAMILY	55287	RPB5-like RNA polymerase subunit	coord: 132..207
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	GENE3D	3.40.1340.10		coord: 4..131 e-value: 1.2E-43 score: 150.4
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	SUPERFAMILY	53036	Eukaryotic RPB5 N-terminal domain	coord: 5..135
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PFAM	PF01191	RNA_pol_Rpb5_C	coord: 134..206 e-value: 3.7E-32 score: 110.0
None	No IPR available	PANTHER	PTHR10535:SF17	DNA-DIRECTED RNA POLYMERASES II AND IV SUBUNIT 5A-LIKE	coord: 1..207
IPR039531	DNA-directed RNA polymerase subunit Rpb5-like	PANTHER	PTHR10535	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	coord: 1..207
IPR020609	Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunit	HAMAP	MF_00025	RNApol_RpoH_RPB5	coord: 134..207 score: 21.796387

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy11G195670	Chy11G195670	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy11G195670.1.exon1	Chy11G195670.1.exon1	exon
Chy11G195670.1.exon2	Chy11G195670.1.exon2	exon
Chy11G195670.1.exon3	Chy11G195670.1.exon3	exon
Chy11G195670.1.exon4	Chy11G195670.1.exon4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy11G195670.1.cds1	Chy11G195670.1.cds1	CDS
Chy11G195670.1.cds2	Chy11G195670.1.cds2	CDS
Chy11G195670.1.cds3	Chy11G195670.1.cds3	CDS
Chy11G195670.1.cds4	Chy11G195670.1.cds4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy11G195670.1	Chy11G195670.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005665	RNA polymerase II, core complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity