CcUC11G209180.1 (mRNA) Watermelon (PI 537277) v1

Overview
NameCcUC11G209180.1
TypemRNA
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr11: 1248472 .. 1254099 (+)
Sequence length246
RNA-Seq ExpressionCcUC11G209180.1
SyntenyCcUC11G209180.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACGGTCCCTCCATTTTTAACAAATATTCTCAAATAAACTATCTCACTACTATCATGTTATCCCTTCCTTACTATCTAGGCCTATCGGATTCCTTATTATGATCCTTTGAACAAGCTTTAAACAAGATTAAAGTTACGTACCTGCTGTTTTATATTCTCTTAACTCAATGAAGCACTTAGCAGCAGCCTCAGCACGATCCACAGAAATATAAATTTCAGCAGCGTCCCGAAGGACATTACAAGCCATTTCAGGATTTGAGCCATCCAAAATGCCAGCAGTTGCACGAAGAGAAGCAGCCCTGGTCCATTCTCTTCTAAGTCTGTCTTCAGCTCTTTCGAAGCACAAAGATGCTGCCCCATAAACACCCTCAGAAAATAACTGCCATAGTGTATAAGAAGTAAGCACCAAAGATGAAAAGAGAAGAGCTTGCAACAGAAATAAGGATAGAATCTATGGACAAGTTCGACACAGCTAAAAATATTTCCAAATTCATTTAAATTAATCCAATAAATTCTCAGTTATTGGATACTTCTTATTACACTAGGAAAAAGTCTTCCGCCTCTTTAAATGCTTCCATATTTGTTACAATAGATGCAAAAGTCCATCATCATGATTTCCTTGAACAAAAATGCACTCAGTTATTGGGTCCTTCAGTTAAGGATCCCTTTCGGTGAAATAGTGCTCAAAATGAGGAGCCTTTTTGAGCCAGCTTTCTCCTTTGGCCATCAATTCATCTCCTAGTTTTATTGATAGTCGTCTTTCAAAGGAAGTTATTAATTCAACAAATGGGACAATCAACAAGGCAGATTTTTTGGATTATGAAGTGGAGACACAAGAGGATTTTATGGTGAATATTAGTAGTGATGACACCCAAATGTTATAGGGTCAGGCGAGTTGTCCCATGAGATTAGTCGAGGTGCACGTAAGCTGGCTCAGACACTCACGGATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTAGTGACGACATGAAGATCCAGATTCCAATTTCTATTGAGCAAGATAAGATTTCAACTGAAGTTGATAAAGATTCTAACCCTCTTTCAAAGAGTTTGTTTGAAGATAATTCTTTTTATTCCTTGCTAAAGAATTGTTGCATCTTTTTCTTTTTCTTAAAGAAAAAAAAAGGAAACAAAACTTTTCATTGAAAATATGAAAATAGACTAATGCTCAAAAATACATTAACCTTTAAGAGATCAAAGAAACAGAGAAAAACAAAAGAAGACAATATTATTGAGATACAATGAGAAGAAAACACCAAAAAGCAAACTCCTAAAACCTAACAAACCAACACTAGAAAAGAAACCCAAAGCCATAGAAGATATGAACTTTAAAGTCAAAGCCAATTAAAGACCATTGAGCAAACAAAGAAAGAAGTCCTTAAAGAGCAAAAGTGAGAGTTCCAAACCACAAAACAACTCAACTTCTAAACTCTCACTTCCGAGCTTGCAACTGCTAGAGAAAATAACACAACTTCTTTAGAGCAAAACAGCAAGGCTTAGTTTAAAGATCACGAGAACTCTACAATATTAGTTCTATTTTGGGACCAAACCACCTAGCTAGACTTTAATTGCTTCTTTGAAGCTTTAAGCCAAGTGCTTGTTTGTTTACAATTCTATGTATTGTAGGATACATACTTGGAGTTATTCAAACTTACTTGGTCAATCTTGTTTGTGGAGGGATTCAAATCTCAAACAAGGAACGACCTTTCTTGCCTCAAGATATTAGAGGACAAGGTATTCTGGTTTTTAATTTCCTTGAATTGATTTTCAAATTCGTTTTCAGGTTGAGTTTTATGGGTCTTGTTAGTTAGCAAGATTATTAGATCCTATTCTCAGGGGTTTTATAACAAGTATCTAGATTCCATATGAAGGGTATTAATAAATATTAGAATAATCAAAAGGGTACTTGTTATCAGAACTTCAACCTTATTTAATCATGCAAACTGGAAAAAGTGATCGTACCTCAAGCCCCAGTGAGCTCCACTCCTCTTTTGTGCTTCGTGCCTTCATTGCTTGTATGATCGAGGAATCCAATGTCTTGACTTGAATATAACATAGTTTTTTCCAATAATCAACCATCGGATTAGAAAACTCCTGGTTGTCTTCATAAATCCATAATCTTTGCCTAGAACGTGTAATTGCTATATGGAGTAGCTTTAGTTCCCAACATAAGTCCATACGTACTGGTTGATTGAAGTTTGGAGAATTGCAAGTGATTTCAAGCATGTCTTGCTCGATCATGTATTGATAAATGGCTCTCCACTGATGTCCCAGAGGTGATGAGTTGAAAAAATTGTACAACAGAATATCCTAAAATGAAAAAACGAATTTAAAATAAAAATTATAAAAAAATATATATAATAATAATAAGAAGAAGAAAACCCCCTTCAATATATAAAAGTAACAGAAAGGTTGACGTTAAATTTTGTAAAACATACATTCTATTCTGAGAAAAGGTATGAATGATCGTTTAGATTATGAAAATTAAAAATGTAACTGCCTCATAATTAATAAAGTGCCTCCAATCTCTGTCCCATTTATCTTATTCAATTGATTGACCATAGTGAAAACAAAGCTTGCCAATGACCCTTATTTGGAGTAGATTTTATAACCTGAGTTTTCTGGTTTTGAAATGCCTAATCCTCCAAACTTGAGACAACTCTTAGAAGCCGGATATATTATCCACTAAAAGATCAAAAGAATGGCTAAGAGTGACAATGATTTCTTAAGAAATTTATTAGAGTTCAAAAGAAGAACTAATATTCACCTGAAACTCCAAGGACTGACACTCCATAATTGTAAGGACAATGGCTTGATTCCCTACCAGATTAGAGATCTCATTCCTGGCATGCTCGTCCCGAACCAGGATGACCTGTTTTGCTCCACCTTCACGAGTATCTGCAGGTATATTTCCTCTCCCTTCAAATAATACCGTCATCATATGTTGACCTTTCCCATTTTCAAGAAGAACTGGAGTTTCAAAATTGCCAGGACTCATTTCGCTTGTTTCAGGGCACAGTATATCAACACACTGAGGAAAGAAACGAAAAAGAAGATCTGTGACACTGTTAGCTAATTGGAGAATTTTAGGTTGTGTACAACAATTCTGATTCATGTGAAGAATGTCAGGGATTTTCAATAACCCTGCATCAATGTCTTTTTCATCAGTTTTTACTCTTGATATGAATTCCTTGTAGAACAGAAATCTTATGTCTTGGAACCTGAAGTCAATACCCTTGGCAATAGTTTGAGCTGTATTACTTGAAAAAACAAAGCCTGAACTGACATTTCCACACAAGTATTTCAAAAGAGCAATTTCCATCATAGTAAGAGCTTGTACTTCGTCCACATACACAAAATCCATTTGGTCACCTGTATATTGAAAACCTTTCAACCGATGATGAAGATCGATGACTAGATCAGCCAAATCATATTCCCCTTTTTCTTTCTTCATCTGTTCATAATCTAAAAATATATCATAAATTCTTTCTCTTTGCTTCCTGCTTAATGTGGACTGATCCTTTGCACGTCGAATATAGTCTAGCTTACTAAGTCTACCACCAAGAGCTTCCTTTGCTCCTAATCCACCTTTTATCTGGGAAATGATTTCATTGAAAACCACAACAGCATCAAGCTTGTTGGTTAGATGGCCACTGAAATAGGACCAGTATGATGAAGCAAAACTTTTAACAGTTACTTCTTTTGATACTATAAAATTATAGGCAGCAGTTGACAATGGATCTCTGGGCTTGCCACAACTAAGTTTCCACTGTTTCTGGAATCTAAACAAGTATGAATCTCCCACAGTTCTATCAAGCATCATCAAAAACTTTCGAAATGTTACCACAAGAGGATATGAGTTGAATGGAATACCATCAAAGCTGTTTGGAACATCCAAAAGATCTTGAGCATCATCCATATCCAGAACGTCAAATTTATTAAAACTTTGGTTCTCTTCTAAAATGTTCCCACCATTGGAAATTCTGCATATTGAAGTAACCTTCCATTATGGCTTAAACACATAAAGCATGATTCAGTAGTGGTAAAATAAGAATACGTCAGAAGCATAATTTGAGACGTCCAGAAACAATATGAGATCATTCTTTATGGTGAAATAACTACAAAGAAGGGGGAAAATACAAACTCCTCAACCAATATAATAATTACTACTCGGAAATGAAAGAAGATCTCGTAATGATCTAAAGAAATTGTTCTTATTCCATGAAGCTACCTAGTAATCATCTTTCTAGTTTGCTATGACAGAAAGTCAATTACTTGGACTTATTTAAAAAAATTGTGAATTCTTATCTTCTTGGATAAAAAACCATTTAGTGGTAAGGAAATTCAATAAATAAAAATGTGCAGAATCTAATGCATTTTTCACGGAAGGAATGACTCTTGGCCAAGTACCAGAAGTTTGCACAAACCTTTTCAAGTACGAAAGGTGCTCCTTTACAGCAAGGCATTGTTTAAGAGTGACTGTGATGAAAAGTTGTCGCAGGACAGTCCTATCAATCTCTTTACATTCCTCTCCACCCTCATTTCTGTAACTTACTTCTGCATTTTGTCTCGTTACCTCACTACATCCCCCGGGATGGATCTGCTGCTGTTCTCTCATAAACAACTTTATTGTCAAAGCTGCAGTTTTTCCACAACCAGGCCTTCCCATTATGAAGGCACTGGTAGGAAAAAGAATTATCTCCAATTGTTCATCTTCCACTTGACATGGGAGATTCAATTCTTTACTATCATGGCTTGAAAGCAAGTGCTTTGCTTTTTGATAGGATAAAGATTGAAACTTCATCTGCAGCAAATTCTTTTTCAGAGCTATATTCTTAGTGTCATCACTGTCAGCTTGCAAACTTAAAATGGCATCGAGCTCAGCTTTCATGTGATCCTTATAGACAACAATATCATGAGAAGCACTCCATGTGATTGGAAGCTCAAGATCCCTGGAGCCACATAACAGAAAATTGCGTGAGGCCAACATCTCCAATTTGGTAAGTAAATATTTGAATGGACAACAATTTTCTCACTGTTTACATTTCAATGAAAAGATATGGGTGTACCCTTTCTGAGACTTTGCTTTACAAAGATTTAGAAAGTCATCAGTATACAGCTCGTGTATGTTGGAAAGGCAATCAACTAGTCCTTTTACATCCGTCAAAGGCTTGATATCCCATATCTTTAGAACTTGTTTGTACTTTGAATCCTTCTCAACATCGAAGGAGTATATGATGAACAGACCTTCAACTTTAATACATTTTATTATGTCAGAACATTTGGGACTGCAGACGTTGTAAGTTTCTGGGCGCCAGCCACAGGAAAGCCTAAGCAAAAGGACAATAATTGA

mRNA sequence

ATGCACGAGTTCAAAAGAAGAACTAATATTCACCTGAAACTCCAAGGACTGACACTCCATAATTGTAAGGACAATGGCTTGATTCCCTACCAGATTAGAGATCTCATTCCTGGCATGCTCGTCCCGAACCAGGATGACCTGTTTTGCTCCACCTTCACGAGTATCTGCAGAACATTTGGGACTGCAGACGTTGTAAGTTTCTGGGCGCCAGCCACAGGAAAGCCTAAGCAAAAGGACAATAATTGA

Coding sequence (CDS)

ATGCACGAGTTCAAAAGAAGAACTAATATTCACCTGAAACTCCAAGGACTGACACTCCATAATTGTAAGGACAATGGCTTGATTCCCTACCAGATTAGAGATCTCATTCCTGGCATGCTCGTCCCGAACCAGGATGACCTGTTTTGCTCCACCTTCACGAGTATCTGCAGAACATTTGGGACTGCAGACGTTGTAAGTTTCTGGGCGCCAGCCACAGGAAAGCCTAAGCAAAAGGACAATAATTGA

Protein sequence

MHEFKRRTNIHLKLQGLTLHNCKDNGLIPYQIRDLIPGMLVPNQDDLFCSTFTSICRTFGTADVVSFWAPATGKPKQKDNN
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CcUC11G209180CcUC11G209180gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC11G209180.1-exonCcUC11G209180.1-exon-CicolChr11:1248472..1248478exon
CcUC11G209180.1-exonCcUC11G209180.1-exon-CicolChr11:1251488..1251650exon
CcUC11G209180.1-exonCcUC11G209180.1-exon-CicolChr11:1254024..1254099exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC11G209180.1-cdsCcUC11G209180.1-cds-CicolChr11:1248472..1248478CDS
CcUC11G209180.1-cdsCcUC11G209180.1-cds-CicolChr11:1251488..1251650CDS
CcUC11G209180.1-cdsCcUC11G209180.1-cds-CicolChr11:1254024..1254099CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CcUC11G209180.1CcUC11G209180.1-proteinpolypeptide