CcUC10G190130.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC10G190130.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	nuclear transcription factor Y subunit B-3-like
Location	CicolChr10: 5149018 .. 5149545 (+)
Sequence length	528
RNA-Seq Expression	CcUC10G190130.1
Synteny	CcUC10G190130.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGACTCCGACAACGATTCCGGCGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGACAGACTCCTTCCCATCGCCAACGTCGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTTATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAGCGTAAGACGATCAACGGCGACGATTTGCTCTGGGCTATGGCGACTTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTTATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCGCCGCCAACCCCGCCGGAGCTACGAATAGTACGTTTTTCGACGGTGGTGGGGAATTTGGGGGTGGGATGGGGATGACCATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTAATACTACGGGTCGGCCCAGGTAG

mRNA sequence

ATGGGTGACTCCGACAACGATTCCGGCGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGACAGACTCCTTCCCATCGCCAACGTCGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTTATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAGCGTAAGACGATCAACGGCGACGATTTGCTCTGGGCTATGGCGACTTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTTATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCGCCGCCAACCCCGCCGGAGCTACGAATAGTACGTTTTTCGACGGTGGTGGGGAATTTGGGGGTGGGATGGGGATGACCATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTAATACTACGGGTCGGCCCAGGTAG

Coding sequence (CDS)

ATGGGTGACTCCGACAACGATTCCGGCGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGACAGACTCCTTCCCATCGCCAACGTCGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTTATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAGCGTAAGACGATCAACGGCGACGATTTGCTCTGGGCTATGGCGACTTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTTATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCGCCGCCAACCCCGCCGGAGCTACGAATAGTACGTTTTTCGACGGTGGTGGGGAATTTGGGGGTGGGATGGGGATGACCATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTAATACTACGGGTCGGCCCAGGTAG

Protein sequence

MGDSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASRDSASAANPAGATNSTFFDGGGEFGGGMGMTMPPNVYGSNGPRWDGPGFNTTGRPR

Homology

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BLAST of CcUC10G190130.1 vs. NCBI nr
Match: XP_022932338.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita moschata])

HSP 1 Score: 330.9 bits (847), Expect = 6.8e-87
Identity = 166/180 (92.22%), Postives = 167/180 (92.78%), Query Frame = 0


Query: 1   MGDSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           M DSDNDSGGGYQKSPSPREHD LLPIANVGRIMKKALPGNAKISKDAKE VQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDGLLPIANVGRIMKKALPGNAKISKDAKEIVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERT LASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTALASR 120

Query: 121 DSAS-----AANPAGATNSTFFDGGGEFGGGMGMTMPPNVYGSNGPRWDGPGFNTTGRPR 176
           DS+S     AA  AGA NSTFFDGGGEFGGGMGMTMPPNVYGSNGPRWDGPGF TTGRPR
Sbjct: 121 DSSSSASAVAAAAAGAANSTFFDGGGEFGGGMGMTMPPNVYGSNGPRWDGPGFTTTGRPR 180

[Close]

BLAST of CcUC10G190130.1 vs. NCBI nr
Match: XP_023553390.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330.5 bits (846), Expect = 8.9e-87
Identity = 165/180 (91.67%), Postives = 167/180 (92.78%), Query Frame = 0


Query: 1   MGDSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           M DSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKE VQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKEIVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERT LASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTALASR 120

Query: 121 D-----SASAANPAGATNSTFFDGGGEFGGGMGMTMPPNVYGSNGPRWDGPGFNTTGRPR 176
           D     SA+AA  AGA +S FFDGGGEFGGGMGMTMPPNVYGSNGPRWDGPGF TTGRPR
Sbjct: 121 DSSSSASAAAATAAGAASSAFFDGGGEFGGGMGMTMPPNVYGSNGPRWDGPGFTTTGRPR 180

[Close]

BLAST of CcUC10G190130.1 vs. NCBI nr
Match: KAG6577523.1 (Nuclear transcription factor Y subunit B-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 330.1 bits (845), Expect = 1.2e-86
Identity = 166/184 (90.22%), Postives = 167/184 (90.76%), Query Frame = 0


Query: 1   MGDSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           M DSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKE VQECVSEFI
Sbjct: 18  MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKEIVQECVSEFI 77

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERT LASR
Sbjct: 78  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTALASR 137

Query: 121 DS---------ASAANPAGATNSTFFDGGGEFGGGMGMTMPPNVYGSNGPRWDGPGFNTT 176
           DS         A+AA  AGA NS FFDGGGEFGGGMGMTMPPNVYGSNGPRWDGPGF TT
Sbjct: 138 DSSSSASAAAAAAAAAAAGAANSAFFDGGGEFGGGMGMTMPPNVYGSNGPRWDGPGFTTT 197

[Close]

BLAST of CcUC10G190130.1 vs. NCBI nr
Match: XP_004148262.1 (nuclear transcription factor Y subunit B-3 [Cucumis sativus] >KGN56019.1 hypothetical protein Csa_009503 [Cucumis sativus])

HSP 1 Score: 326.6 bits (836), Expect = 1.3e-85
Identity = 169/184 (91.85%), Postives = 170/184 (92.39%), Query Frame = 0


Query: 1   MGDSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           M DSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120

Query: 121 DSA-SAANPAGATNSTFFDGGGEFGG------GMGM--TMPPNVYGSNGPRWDGPGFNTT 176
           DSA SAAN A A NS FFDGGGEFGG      GMGM  TMPPNVYGSNGPRWDGPGF+TT
Sbjct: 121 DSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTT 180

[Close]

BLAST of CcUC10G190130.1 vs. NCBI nr
Match: XP_038905070.1 (nuclear transcription factor Y subunit B-3-like [Benincasa hispida])

HSP 1 Score: 326.2 bits (835), Expect = 1.7e-85
Identity = 165/177 (93.22%), Postives = 167/177 (94.35%), Query Frame = 0


Query: 1   MGDSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           M DSDNDSGGG QKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGCQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEAS+KCHNEKRKTINGDDLLWAMATLGFEDYVDPLK YLQRFREIEGERTTLASR
Sbjct: 61  SFVTGEASEKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKFYLQRFREIEGERTTLASR 120

Query: 121 DSA-SAANPAGATNSTFFDGGGEFGGGMGMT-MPPNVYGSNGPRWDGPGFNTTGRPR 176
           DSA +AAN A A NSTFFDGGGEFG GMGMT MPPNVYGSNGPRWDGPGF TTGRPR
Sbjct: 121 DSANAAANSAAAANSTFFDGGGEFGDGMGMTMMPPNVYGSNGPRWDGPGFTTTGRPR 177

[Close]

BLAST of CcUC10G190130.1 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 8.7e-53
Identity = 119/191 (62.30%), Postives = 128/191 (67.02%), Query Frame = 0


Query: 1   MGDSDNDSGGGY-------QKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQ 60
           MGDSD DSGGG        Q S SPRE DR LPIANV RIMKKALP NAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGE 120
           ECVSEFISFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK+YLQRFREIEGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 RTTLASRDSASAANPAGATNSTFFDGGGEFGGGMGMT---------MPPNVYGSNGPRWD 176
           RT L    +               DGGG +GGG GM             ++YG+ G   D
Sbjct: 121 RTGLGRPQTGGEVGE--HQRDAVGDGGGFYGGGGGMQYHQHHQFLHQQNHMYGATGGGSD 180

[Close]

BLAST of CcUC10G190130.1 vs. ExPASy Swiss-Prot
Match: O23310 (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 5.3e-50
Identity = 104/152 (68.42%), Postives = 114/152 (75.00%), Query Frame = 0


Query: 1   MGDSDNDSGGGYQ-KSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           M DSDNDSGG     + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEF
Sbjct: 1   MADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLAS 120
           ISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK+YLQ++RE+EGE+TT A 
Sbjct: 61  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAG 120

Query: 121 RDSASAANPAGATNSTFFDGGGEFGGGMGMTM 152
           R         G    +   G   +GGGM  TM
Sbjct: 121 RQGDKEGGGGGGGAGSGSGGAPMYGGGMVTTM 152

[Close]

BLAST of CcUC10G190130.1 vs. ExPASy Swiss-Prot
Match: Q75IZ7 (Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB8 PE=1 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.2e-48
Identity = 112/175 (64.00%), Postives = 122/175 (69.71%), Query Frame = 0


Query: 1   MGDSDNDSGGGYQ----KSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECV 60
           M DSDNDSGG       +  SPRE DR LPIANV RIMKKALP NAKISKDAKETVQECV
Sbjct: 1   MPDSDNDSGGPSNYAGGELSSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60

Query: 61  SEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGER-- 120
           SEFISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYVDPLK YL +FREIEGER  
Sbjct: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKHYLHKFREIEGERAA 120

Query: 121 -TTLASRDSASAANPAGATNSTFFDGG-------GEFGGGMGMTMPPNVYGSNGP 162
            +T  +  SA++  P    ++    GG       G   GGM M M   +YGS  P
Sbjct: 121 ASTTGAGTSAASTTPPQQQHTANAAGGYAGYAAPGAGPGGMMMMMGQPMYGSPPP 175

[Close]

BLAST of CcUC10G190130.1 vs. ExPASy Swiss-Prot
Match: Q69J40 (Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB10 PE=1 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 9.3e-47
Identity = 107/173 (61.85%), Postives = 122/173 (70.52%), Query Frame = 0


Query: 1   MGDSDNDSGG--GYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSE 60
           M DSDN+SGG     +  S RE DR LPIANV RIMK+ALP NAKISKDAKETVQECVSE
Sbjct: 1   MPDSDNESGGPSNAGEYASAREQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSE 60

Query: 61  FISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLA 120
           FISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDY+DPLKLYL +FRE+EGE+   A
Sbjct: 61  FISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGEKAIGA 120

Query: 121 SRDSASAANPAGATNS----------TFFDGG-GEFGGGMGMTMPPN--VYGS 159
           +      A  +G + S          +  +GG G +GGG GM M     +YGS
Sbjct: 121 AGSGGGGAASSGGSGSGSGSHHHQDASRNNGGYGMYGGGGGMIMMMGQPMYGS 173

[Close]

BLAST of CcUC10G190130.1 vs. ExPASy Swiss-Prot
Match: P25209 (Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.1e-42
Identity = 95/159 (59.75%), Postives = 112/159 (70.44%), Query Frame = 0


Query: 9   GGGYQKSPSP---------REHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 68
           GGG  +S SP         RE DR LPIAN+ RIMKKA+P N KI+KDAKETVQECVSEF
Sbjct: 11  GGGSHESGSPRGGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEF 70

Query: 69  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGE-RTTLA 128
           ISF+T EASDKC  EKRKTINGDDLLWAMATLGFEDY++PLK+YLQ++RE+EG+ + T  
Sbjct: 71  ISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAK 130

Query: 129 SRDSA---SAANPAGATNSTFFDGG--GEFGGGMGMTMP 153
           S D +    A    GA++S     G  G +  GMG   P
Sbjct: 131 SSDGSIKKDALGHVGASSSAAEGMGQQGAYNQGMGYMQP 169

[Close]

BLAST of CcUC10G190130.1 vs. ExPASy TrEMBL
Match: A0A6J1F1D9 (nuclear transcription factor Y subunit B-3-like OS=Cucurbita moschata OX=3662 GN=LOC111438720 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 3.3e-87
Identity = 166/180 (92.22%), Postives = 167/180 (92.78%), Query Frame = 0


Query: 1   MGDSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           M DSDNDSGGGYQKSPSPREHD LLPIANVGRIMKKALPGNAKISKDAKE VQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDGLLPIANVGRIMKKALPGNAKISKDAKEIVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERT LASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTALASR 120

Query: 121 DSAS-----AANPAGATNSTFFDGGGEFGGGMGMTMPPNVYGSNGPRWDGPGFNTTGRPR 176
           DS+S     AA  AGA NSTFFDGGGEFGGGMGMTMPPNVYGSNGPRWDGPGF TTGRPR
Sbjct: 121 DSSSSASAVAAAAAGAANSTFFDGGGEFGGGMGMTMPPNVYGSNGPRWDGPGFTTTGRPR 180

[Close]

BLAST of CcUC10G190130.1 vs. ExPASy TrEMBL
Match: A0A0A0L4U4 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G047800 PE=3 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 6.2e-86
Identity = 169/184 (91.85%), Postives = 170/184 (92.39%), Query Frame = 0


Query: 1   MGDSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           M DSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120

Query: 121 DSA-SAANPAGATNSTFFDGGGEFGG------GMGM--TMPPNVYGSNGPRWDGPGFNTT 176
           DSA SAAN A A NS FFDGGGEFGG      GMGM  TMPPNVYGSNGPRWDGPGF+TT
Sbjct: 121 DSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTT 180

[Close]

BLAST of CcUC10G190130.1 vs. ExPASy TrEMBL
Match: A0A6J1HQB9 (nuclear transcription factor Y subunit B-3-like OS=Cucurbita maxima OX=3661 GN=LOC111465124 PE=3 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.4e-85
Identity = 165/182 (90.66%), Postives = 167/182 (91.76%), Query Frame = 0


Query: 1   MGDSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           M DSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKE VQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKEIVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERT LASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTALASR 120

Query: 121 DSASAA-----NPAGATNSTFFDGGGEFGGGMG--MTMPPNVYGSNGPRWDGPGFNTTGR 176
           DS+S+A       AGA NS FFDGGGEFGGGMG  MTMPPNVYGSNGPRWDGPGF TTGR
Sbjct: 121 DSSSSAAATATAAAGAANSAFFDGGGEFGGGMGMTMTMPPNVYGSNGPRWDGPGFTTTGR 180

[Close]

BLAST of CcUC10G190130.1 vs. ExPASy TrEMBL
Match: A0A5A7VDK6 (Nuclear transcription factor Y subunit B-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00130 PE=3 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 5.3e-85
Identity = 166/185 (89.73%), Postives = 168/185 (90.81%), Query Frame = 0


Query: 1   MGDSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           M DSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120

Query: 121 DSA--SAANPAGATNSTFFDGGGEFGGGMG--------MTMPPNVYGSNGPRWDGPGFNT 176
           DSA  SA N A A NS FFDGGGEFGGGMG        M MPPNVYGS+GPRWDGPGF+T
Sbjct: 121 DSAASSAPNSAVAGNSGFFDGGGEFGGGMGMGMGMGMTMAMPPNVYGSDGPRWDGPGFST 180

[Close]

BLAST of CcUC10G190130.1 vs. ExPASy TrEMBL
Match: A0A1S3BL47 (nuclear transcription factor Y subunit B-3-like OS=Cucumis melo OX=3656 GN=LOC103491025 PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 6.9e-85
Identity = 166/189 (87.83%), Postives = 168/189 (88.89%), Query Frame = 0


Query: 1   MGDSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           M DSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120

Query: 121 DSA--SAANPAGATNSTFFDGGGEFGGGMG------------MTMPPNVYGSNGPRWDGP 176
           DSA  SA N A A NS FFDGGGEFGGGMG            M MPPNVYGS+GPRWDGP
Sbjct: 121 DSAASSAPNSAAAGNSGFFDGGGEFGGGMGMGMGMGMGMGMTMAMPPNVYGSDGPRWDGP 180

[Close]

BLAST of CcUC10G190130.1 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 208.0 bits (528), Expect = 6.2e-54
Identity = 119/191 (62.30%), Postives = 128/191 (67.02%), Query Frame = 0


Query: 1   MGDSDNDSGGGY-------QKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQ 60
           MGDSD DSGGG        Q S SPRE DR LPIANV RIMKKALP NAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGE 120
           ECVSEFISFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK+YLQRFREIEGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 RTTLASRDSASAANPAGATNSTFFDGGGEFGGGMGMT---------MPPNVYGSNGPRWD 176
           RT L    +               DGGG +GGG GM             ++YG+ G   D
Sbjct: 121 RTGLGRPQTGGEVGE--HQRDAVGDGGGFYGGGGGMQYHQHHQFLHQQNHMYGATGGGSD 180

[Close]

BLAST of CcUC10G190130.1 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 )

HSP 1 Score: 198.7 bits (504), Expect = 3.8e-51
Identity = 104/152 (68.42%), Postives = 114/152 (75.00%), Query Frame = 0


Query: 1   MGDSDNDSGGGYQ-KSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           M DSDNDSGG     + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEF
Sbjct: 1   MADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLAS 120
           ISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK+YLQ++RE+EGE+TT A 
Sbjct: 61  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAG 120

Query: 121 RDSASAANPAGATNSTFFDGGGEFGGGMGMTM 152
           R         G    +   G   +GGGM  TM
Sbjct: 121 RQGDKEGGGGGGGAGSGSGGAPMYGGGMVTTM 152

[Close]

BLAST of CcUC10G190130.1 vs. TAIR 10
Match: AT2G38880.2 (nuclear factor Y, subunit B1 )

HSP 1 Score: 167.2 bits (422), Expect = 1.2e-41
Identity = 80/126 (63.49%), Postives = 94/126 (74.60%), Query Frame = 0


Query: 8   SGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEA 67
           +G G +   S RE DR LPIAN+ RIMKKALP N KI KDAK+TVQECVSEFISF+T EA
Sbjct: 9   AGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEA 68

Query: 68  SDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASRDSASAAN 127
           SDKC  EKRKT+NGDDLLWAMATLGFEDY++PLK+YL R+RE+EG+          S  +
Sbjct: 69  SDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKSGDGSNRD 128

Query: 128 PAGATN 134
             G  +
Sbjct: 129 AGGGVS 134

[Close]

BLAST of CcUC10G190130.1 vs. TAIR 10
Match: AT2G38880.3 (nuclear factor Y, subunit B1 )

HSP 1 Score: 167.2 bits (422), Expect = 1.2e-41
Identity = 80/126 (63.49%), Postives = 94/126 (74.60%), Query Frame = 0


Query: 8   SGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEA 67
           +G G +   S RE DR LPIAN+ RIMKKALP N KI KDAK+TVQECVSEFISF+T EA
Sbjct: 9   AGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEA 68

Query: 68  SDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASRDSASAAN 127
           SDKC  EKRKT+NGDDLLWAMATLGFEDY++PLK+YL R+RE+EG+          S  +
Sbjct: 69  SDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKSGDGSNRD 128

Query: 128 PAGATN 134
             G  +
Sbjct: 129 AGGGVS 134

[Close]

BLAST of CcUC10G190130.1 vs. TAIR 10
Match: AT2G38880.1 (nuclear factor Y, subunit B1 )

HSP 1 Score: 167.2 bits (422), Expect = 1.2e-41
Identity = 80/126 (63.49%), Postives = 94/126 (74.60%), Query Frame = 0


Query: 8   SGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEA 67
           +G G +   S RE DR LPIAN+ RIMKKALP N KI KDAK+TVQECVSEFISF+T EA
Sbjct: 9   AGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEA 68

Query: 68  SDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASRDSASAAN 127
           SDKC  EKRKT+NGDDLLWAMATLGFEDY++PLK+YL R+RE+EG+          S  +
Sbjct: 69  SDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKSGDGSNRD 128

Query: 128 PAGATN 134
             G  +
Sbjct: 129 AGGGVS 134

The following BLAST results are available for this feature:

BLAST of CcUC10G190130.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932338.1	6.8e-87	92.22	nuclear transcription factor Y subunit B-3-like [Cucurbita moschata]	[more]
XP_023553390.1	8.9e-87	91.67	nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo]	[more]
KAG6577523.1	1.2e-86	90.22	Nuclear transcription factor Y subunit B-3, partial [Cucurbita argyrosperma subs...	[more]
XP_004148262.1	1.3e-85	91.85	nuclear transcription factor Y subunit B-3 [Cucumis sativus] >KGN56019.1 hypothe...	[more]
XP_038905070.1	1.7e-85	93.22	nuclear transcription factor Y subunit B-3-like [Benincasa hispida]	[more]

BLAST of CcUC10G190130.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FGJ3	8.7e-53	62.30	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
O23310	5.3e-50	68.42	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q75IZ7	2.2e-48	64.00	Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q69J40	9.3e-47	61.85	Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=3...	[more]
P25209	3.1e-42	59.75	Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1	[more]

BLAST of CcUC10G190130.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F1D9	3.3e-87	92.22	nuclear transcription factor Y subunit B-3-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A0A0L4U4	6.2e-86	91.85	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G0478...	[more]
A0A6J1HQB9	1.4e-85	90.66	nuclear transcription factor Y subunit B-3-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5A7VDK6	5.3e-85	89.73	Nuclear transcription factor Y subunit B-3-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3BL47	6.9e-85	87.83	nuclear transcription factor Y subunit B-3-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of CcUC10G190130.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47640.1	6.2e-54	62.30	nuclear factor Y, subunit B2	[more]
AT4G14540.1	3.8e-51	68.42	nuclear factor Y, subunit B3	[more]
AT2G38880.2	1.2e-41	63.49	nuclear factor Y, subunit B1	[more]
AT2G38880.3	1.2e-41	63.49	nuclear factor Y, subunit B1	[more]
AT2G38880.1	1.2e-41	63.49	nuclear factor Y, subunit B1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 52..70 score: 52.03 coord: 90..108 score: 37.44 coord: 71..89 score: 39.11
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 154..175
None	No IPR available	PANTHER	PTHR11064:SF129	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2	coord: 1..150
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 24..88 e-value: 1.8E-27 score: 95.4
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 11..135 e-value: 5.9E-45 score: 154.5
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 22..123
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 1..150
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 55..71

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC10G190130	CcUC10G190130	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G190130.1-exon	CcUC10G190130.1-exon-CicolChr10:5149018..5149545	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G190130.1-cds	CcUC10G190130.1-cds-CicolChr10:5149018..5149545	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC10G190130.1	CcUC10G190130.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding