CcUC10G186410.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC10G186410.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Pentatricopeptide repeat-containing protein
Location	CicolChr10: 487910 .. 489490 (+)
Sequence length	1581
RNA-Seq Expression	CcUC10G186410.1
Synteny	CcUC10G186410.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGAGCTCTGCCGGCGACCTGGGCGAGCTCTGGCGTGGAGAAATCAGCCATGCTTCAGAATGCTAAGATCCTTCTCAACCGATCGGAGTTCTGGGAAGTATCATCGCGATTCATACGATTACTCGAAATTACTGGGGCATTGCAGAACCATCAGAAGCGTTCAAGAACTACATGCTCAGATCATAGTTGAGGGTCAAGACCAAAATGAATTCTTAGCCACGAAGCTAATCGGCAAATACGTAGAGCATGATGAATCGAAAATGGGAATTGCACGGAAGGTGTTTGATAGATTGCTTCAAAGAGATGTGTTCGCGTGGAACGTGGTTATTCAAGGGTATGCGAGTTCGGGTCCGTTTGTTGAAGCCCTCAACCTCTTTGATGAAATGCGAGTCAGTGGCGCACCCACCAATCGGTATACGTTTCCTTTTGTATTGAAGGCATGTGGCGCAATGAAGAACATTGAGAAGGGGAAGATTGTTCATGGGCATGTTTTGAAATCTGGGTTGGACTTGGATTTGTTTGTGGGCAATGCTCTGATTGCGTTTTATGCCAAGTGCCAGGACGTTGAAACTGCTCGTAAAGTGTTTGATGAAATGTCTCTAAGAGACATTGTGAGTTGGAACTCCATGATTTCTGGGTATACTTTGAATGGGAAAGTGGACGATGCTATTATGCTTTTCCGTGCCATGCTGCATGACCAAGCTCAAGCTGCTTGCTCACCTGATCATGCAACTCTTGTTGGGATTCTTCCTGCTTGTGTTACAAAATCTGCTTCCCAAGTTGGCTTCTGGGTTCATTCCTATGTTATAAAGACAGGAATGGTAGTTGAGGCTCCGTTGGGGAGTTGCCTTATTTCAATGTATGGTAACTGTGGTCATGTGAACATTGCAAGAGATGTTTTCGACCGAATTGACAACAAAAACATTATCGTATGGAGTGCAATCATAAGGTGTTATGGAATGCATGGCTTTGCAAATGAGGCATTAAACATGTTCACAAGATTGGAAGAAGTTGGTCTTAAACCAGATGATGTGATCTTCCTGAATTTGTTGTCGACATGTAGTCATACAGGACTTGTTGCAAAAGGCCGCGAGATATATGAAAAAATGGAAGCTTATTGTGTGGAGAGGAAAGAGGAACATTATGCGTGCATGGTGGATCTCTTAGGGAGGGCTGGTTTCTTGGAACAAGCAGTAGAGTTCGTTGAAGGCATGCCAGTTCAGGCGGGGAAAGATGTGTATGGTGCATTGCTCGGTGCTTGTAGGATACATAACAACCTAGAGCTAGCTAAAGAAATTGGGGAGAAGTTGTTCGTGTTAGACCCCGAAAACGCCGGTCGATACGTGATCTTAGCTAGTATGTATGAAGATGCAGGACAGTGGGAAGATGCTGCTAAACTAAGGAAGTTGCTGAGAGATAGGAATATTAGGAAGCCAGTTGGTTGCAGTTCAATAGAGGTAGATAGGATCAATCATGTGTTTGGGAAGGAGGATGAAAATCACCCCTTCACAGAACAGATTTTTGACACATTGGAGAAGCTAGAAAGGATAATGGAGGTAGATTTTGAACCTATTTAA

mRNA sequence

ATGAATGAGCTCTGCCGGCGACCTGGGCGAGCTCTGGCGTGGAGAAATCAGCCATGCTTCAGAATGCTAAGATCCTTCTCAACCGATCGGAGTTCTGGGAAGTATCATCGCGATTCATACGATTACTCGAAATTACTGGGGCATTGCAGAACCATCAGAAGCGTTCAAGAACTACATGCTCAGATCATAGTTGAGGGTCAAGACCAAAATGAATTCTTAGCCACGAAGCTAATCGGCAAATACGTAGAGCATGATGAATCGAAAATGGGAATTGCACGGAAGGTGTTTGATAGATTGCTTCAAAGAGATGTGTTCGCGTGGAACGTGGTTATTCAAGGGTATGCGAGTTCGGGTCCGTTTGTTGAAGCCCTCAACCTCTTTGATGAAATGCGAGTCAGTGGCGCACCCACCAATCGGTATACGTTTCCTTTTGTATTGAAGGCATGTGGCGCAATGAAGAACATTGAGAAGGGGAAGATTGTTCATGGGCATGTTTTGAAATCTGGGTTGGACTTGGATTTGTTTGTGGGCAATGCTCTGATTGCGTTTTATGCCAAGTGCCAGGACGTTGAAACTGCTCGTAAAGTGTTTGATGAAATGTCTCTAAGAGACATTGTGAGTTGGAACTCCATGATTTCTGGGTATACTTTGAATGGGAAAGTGGACGATGCTATTATGCTTTTCCGTGCCATGCTGCATGACCAAGCTCAAGCTGCTTGCTCACCTGATCATGCAACTCTTGTTGGGATTCTTCCTGCTTGTGTTACAAAATCTGCTTCCCAAGTTGGCTTCTGGGTTCATTCCTATGTTATAAAGACAGGAATGGTAGTTGAGGCTCCGTTGGGGAGTTGCCTTATTTCAATGTATGGTAACTGTGGTCATGTGAACATTGCAAGAGATGTTTTCGACCGAATTGACAACAAAAACATTATCGTATGGAGTGCAATCATAAGGTGTTATGGAATGCATGGCTTTGCAAATGAGGCATTAAACATGTTCACAAGATTGGAAGAAGTTGGTCTTAAACCAGATGATGTGATCTTCCTGAATTTGTTGTCGACATGTAGTCATACAGGACTTGTTGCAAAAGGCCGCGAGATATATGAAAAAATGGAAGCTTATTGTGTGGAGAGGAAAGAGGAACATTATGCGTGCATGGTGGATCTCTTAGGGAGGGCTGGTTTCTTGGAACAAGCAGTAGAGTTCGTTGAAGGCATGCCAGTTCAGGCGGGGAAAGATGTGTATGGTGCATTGCTCGGTGCTTGTAGGATACATAACAACCTAGAGCTAGCTAAAGAAATTGGGGAGAAGTTGTTCGTGTTAGACCCCGAAAACGCCGGTCGATACGTGATCTTAGCTAGTATGTATGAAGATGCAGGACAGTGGGAAGATGCTGCTAAACTAAGGAAGTTGCTGAGAGATAGGAATATTAGGAAGCCAGTTGGTTGCAGTTCAATAGAGGTAGATAGGATCAATCATGTGTTTGGGAAGGAGGATGAAAATCACCCCTTCACAGAACAGATTTTTGACACATTGGAGAAGCTAGAAAGGATAATGGAGGTAGATTTTGAACCTATTTAA

Coding sequence (CDS)

ATGAATGAGCTCTGCCGGCGACCTGGGCGAGCTCTGGCGTGGAGAAATCAGCCATGCTTCAGAATGCTAAGATCCTTCTCAACCGATCGGAGTTCTGGGAAGTATCATCGCGATTCATACGATTACTCGAAATTACTGGGGCATTGCAGAACCATCAGAAGCGTTCAAGAACTACATGCTCAGATCATAGTTGAGGGTCAAGACCAAAATGAATTCTTAGCCACGAAGCTAATCGGCAAATACGTAGAGCATGATGAATCGAAAATGGGAATTGCACGGAAGGTGTTTGATAGATTGCTTCAAAGAGATGTGTTCGCGTGGAACGTGGTTATTCAAGGGTATGCGAGTTCGGGTCCGTTTGTTGAAGCCCTCAACCTCTTTGATGAAATGCGAGTCAGTGGCGCACCCACCAATCGGTATACGTTTCCTTTTGTATTGAAGGCATGTGGCGCAATGAAGAACATTGAGAAGGGGAAGATTGTTCATGGGCATGTTTTGAAATCTGGGTTGGACTTGGATTTGTTTGTGGGCAATGCTCTGATTGCGTTTTATGCCAAGTGCCAGGACGTTGAAACTGCTCGTAAAGTGTTTGATGAAATGTCTCTAAGAGACATTGTGAGTTGGAACTCCATGATTTCTGGGTATACTTTGAATGGGAAAGTGGACGATGCTATTATGCTTTTCCGTGCCATGCTGCATGACCAAGCTCAAGCTGCTTGCTCACCTGATCATGCAACTCTTGTTGGGATTCTTCCTGCTTGTGTTACAAAATCTGCTTCCCAAGTTGGCTTCTGGGTTCATTCCTATGTTATAAAGACAGGAATGGTAGTTGAGGCTCCGTTGGGGAGTTGCCTTATTTCAATGTATGGTAACTGTGGTCATGTGAACATTGCAAGAGATGTTTTCGACCGAATTGACAACAAAAACATTATCGTATGGAGTGCAATCATAAGGTGTTATGGAATGCATGGCTTTGCAAATGAGGCATTAAACATGTTCACAAGATTGGAAGAAGTTGGTCTTAAACCAGATGATGTGATCTTCCTGAATTTGTTGTCGACATGTAGTCATACAGGACTTGTTGCAAAAGGCCGCGAGATATATGAAAAAATGGAAGCTTATTGTGTGGAGAGGAAAGAGGAACATTATGCGTGCATGGTGGATCTCTTAGGGAGGGCTGGTTTCTTGGAACAAGCAGTAGAGTTCGTTGAAGGCATGCCAGTTCAGGCGGGGAAAGATGTGTATGGTGCATTGCTCGGTGCTTGTAGGATACATAACAACCTAGAGCTAGCTAAAGAAATTGGGGAGAAGTTGTTCGTGTTAGACCCCGAAAACGCCGGTCGATACGTGATCTTAGCTAGTATGTATGAAGATGCAGGACAGTGGGAAGATGCTGCTAAACTAAGGAAGTTGCTGAGAGATAGGAATATTAGGAAGCCAGTTGGTTGCAGTTCAATAGAGGTAGATAGGATCAATCATGTGTTTGGGAAGGAGGATGAAAATCACCCCTTCACAGAACAGATTTTTGACACATTGGAGAAGCTAGAAAGGATAATGGAGGTAGATTTTGAACCTATTTAA

Protein sequence

MNELCRRPGRALAWRNQPCFRMLRSFSTDRSSGKYHRDSYDYSKLLGHCRTIRSVQELHAQIIVEGQDQNEFLATKLIGKYVEHDESKMGIARKVFDRLLQRDVFAWNVVIQGYASSGPFVEALNLFDEMRVSGAPTNRYTFPFVLKACGAMKNIEKGKIVHGHVLKSGLDLDLFVGNALIAFYAKCQDVETARKVFDEMSLRDIVSWNSMISGYTLNGKVDDAIMLFRAMLHDQAQAACSPDHATLVGILPACVTKSASQVGFWVHSYVIKTGMVVEAPLGSCLISMYGNCGHVNIARDVFDRIDNKNIIVWSAIIRCYGMHGFANEALNMFTRLEEVGLKPDDVIFLNLLSTCSHTGLVAKGREIYEKMEAYCVERKEEHYACMVDLLGRAGFLEQAVEFVEGMPVQAGKDVYGALLGACRIHNNLELAKEIGEKLFVLDPENAGRYVILASMYEDAGQWEDAAKLRKLLRDRNIRKPVGCSSIEVDRINHVFGKEDENHPFTEQIFDTLEKLERIMEVDFEPI

Homology

[Close]

BLAST of CcUC10G186410.1 vs. NCBI nr
Match: XP_038905146.1 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 960.3 bits (2481), Expect = 6.9e-276
Identity = 467/526 (88.78%), Postives = 493/526 (93.73%), Query Frame = 0


Query: 1   MNELCRRPGRALAWRNQPCFRMLRSFSTDRSSGKYHRDSYDYSKLLGHCRTIRSVQELHA 60
           MNELCRR  +ALA RNQPCFR+LRSF +DRSSGKYHRDSYDY+KLL HCRTIRSVQ LHA
Sbjct: 1   MNELCRRTPQALASRNQPCFRLLRSFFSDRSSGKYHRDSYDYTKLLDHCRTIRSVQGLHA 60

Query: 61  QIIVEGQDQNEFLATKLIGKYVEHDESKMGIARKVFDRLLQRDVFAWNVVIQGYASSGPF 120
           QIIVEGQDQN FLATKLIGKYVEH ESKMGIARKVFD+LLQRDVF WNVVIQGYA+ GPF
Sbjct: 61  QIIVEGQDQNGFLATKLIGKYVEHGESKMGIARKVFDKLLQRDVFVWNVVIQGYANLGPF 120

Query: 121 VEALNLFDEMRVSGAPTNRYTFPFVLKACGAMKNIEKGKIVHGHVLKSGLDLDLFVGNAL 180
           VEALNLFDEMRVSGAPTNRYTFPFVLKACGAMKN +KGKIVHGHVLK GLDLDLFV NAL
Sbjct: 121 VEALNLFDEMRVSGAPTNRYTFPFVLKACGAMKNSDKGKIVHGHVLKCGLDLDLFVSNAL 180

Query: 181 IAFYAKCQDVETARKVFDEMSLRDIVSWNSMISGYTLNGKVDDAIMLFRAMLHDQAQAAC 240
           IAFYAKCQDVETARKVFDEMSLRDIVSWNSMI+GYTLN KV+DAIMLF AMLH+  Q+AC
Sbjct: 181 IAFYAKCQDVETARKVFDEMSLRDIVSWNSMIAGYTLNEKVEDAIMLFHAMLHN--QSAC 240

Query: 241 SPDHATLVGILPACVTKSASQVGFWVHSYVIKTGMVVEAPLGSCLISMYGNCGHVNIARD 300
           SPD ATL+GILPACVTKSASQVGFWVHSYVIKTGM V A LGSCLIS+Y NCGHVNIARD
Sbjct: 241 SPDSATLLGILPACVTKSASQVGFWVHSYVIKTGMEVGAQLGSCLISVYANCGHVNIARD 300

Query: 301 VFDRIDNKNIIVWSAIIRCYGMHGFANEALNMFTRLEEVGLKPDDVIFLNLLSTCSHTGL 360
           VF+RID+KN+IVWSAIIRCYGMHGFA+EALNMFTRLEE GLKPD V+FLNLLSTCSH GL
Sbjct: 301 VFNRIDDKNVIVWSAIIRCYGMHGFADEALNMFTRLEEAGLKPDGVLFLNLLSTCSHAGL 360

Query: 361 VAKGREIYEKMEAYCVERKEEHYACMVDLLGRAGFLEQAVEFVEGMPVQAGKDVYGALLG 420
           +AKG EIYEKME Y VERKEEHYACMVDLLGRAGFLEQAVEF+EGMPVQAGKDVYGALLG
Sbjct: 361 IAKGHEIYEKMEGYGVERKEEHYACMVDLLGRAGFLEQAVEFIEGMPVQAGKDVYGALLG 420

Query: 421 ACRIHNNLELAKEIGEKLFVLDPENAGRYVILASMYEDAGQWEDAAKLRKLLRDRNIRKP 480
           ACRIH N+ELAKEIGEKLF+LD +NAGRY+ILASMYEDAGQWEDAAKLRKLLRDRN+RKP
Sbjct: 421 ACRIHKNIELAKEIGEKLFILDSQNAGRYMILASMYEDAGQWEDAAKLRKLLRDRNVRKP 480

Query: 481 VGCSSIEVDRINHVFGKEDENHPFTEQIFDTLEKLERIMEVDFEPI 527
           VGCSSIEVDRI+HVFGKEDE HPFTEQIFDTLEKLE IME DFEPI
Sbjct: 481 VGCSSIEVDRIHHVFGKEDETHPFTEQIFDTLEKLESIMEADFEPI 524

[Close]

BLAST of CcUC10G186410.1 vs. NCBI nr
Match: XP_022971604.1 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 933.3 bits (2411), Expect = 9.0e-268
Identity = 456/526 (86.69%), Postives = 482/526 (91.63%), Query Frame = 0


Query: 1   MNELCRRPGRALAWRNQPCFRMLRSFSTDRSSGKYHRDSYDYSKLLGHCRTIRSVQELHA 60
           MN L RR  RAL  R QP FR LRS   D S  +YHRDSYDY+KLL HCR+IRSVQELHA
Sbjct: 1   MNGLYRRYSRALVSRKQPFFRFLRSIFNDWSRREYHRDSYDYTKLLQHCRSIRSVQELHA 60

Query: 61  QIIVEGQDQNEFLATKLIGKYVEHDESKMGIARKVFDRLLQRDVFAWNVVIQGYASSGPF 120
           QI+VEG DQN FLATKLIGKY E+ E KMGIARKVFDRLL++DVF WNVVIQGYA+ GPF
Sbjct: 61  QIVVEGHDQNGFLATKLIGKYAEYGEEKMGIARKVFDRLLEKDVFVWNVVIQGYANWGPF 120

Query: 121 VEALNLFDEMRVSGAPTNRYTFPFVLKACGAMKNIEKGKIVHGHVLKSGLDLDLFVGNAL 180
            EALNL+DEMRV G PTNRYTFPFVLKACGAMKN EKGKIVHGHVLK GLDLDLFVGNAL
Sbjct: 121 AEALNLYDEMRVGGEPTNRYTFPFVLKACGAMKNSEKGKIVHGHVLKCGLDLDLFVGNAL 180

Query: 181 IAFYAKCQDVETARKVFDEMSLRDIVSWNSMISGYTLNGKVDDAIMLFRAMLHDQAQAAC 240
           IAFY+KCQDVETARKVFDEMSLRDIVSWNSMI+GYTLNGKVD+AIMLF AMLH+  Q AC
Sbjct: 181 IAFYSKCQDVETARKVFDEMSLRDIVSWNSMIAGYTLNGKVDEAIMLFHAMLHN--QTAC 240

Query: 241 SPDHATLVGILPACVTKSASQVGFWVHSYVIKTGMVVEAPLGSCLISMYGNCGHVNIARD 300
           SPD+ATLVGILPACVTKSASQVGFWVHSYVIKTGM V APLGSCLISMY NCGHVNIARD
Sbjct: 241 SPDNATLVGILPACVTKSASQVGFWVHSYVIKTGMEVGAPLGSCLISMYANCGHVNIARD 300

Query: 301 VFDRIDNKNIIVWSAIIRCYGMHGFANEALNMFTRLEEVGLKPDDVIFLNLLSTCSHTGL 360
           VFDRI +KN+IVWSAIIR YGMHGFA+EALNMFT LEEVGLKPD VIFLNLLSTCSH GL
Sbjct: 301 VFDRIKDKNVIVWSAIIRSYGMHGFADEALNMFTSLEEVGLKPDGVIFLNLLSTCSHAGL 360

Query: 361 VAKGREIYEKMEAYCVERKEEHYACMVDLLGRAGFLEQAVEFVEGMPVQAGKDVYGALLG 420
           V KGREIYEKMEAY  ERKEEHYACMVDLLGRAGFLEQAVEF+EGMPVQAGKDVYGALLG
Sbjct: 361 VEKGREIYEKMEAYGAERKEEHYACMVDLLGRAGFLEQAVEFIEGMPVQAGKDVYGALLG 420

Query: 421 ACRIHNNLELAKEIGEKLFVLDPENAGRYVILASMYEDAGQWEDAAKLRKLLRDRNIRKP 480
           ACRIHNN+ELAKE+G+KLFVLDPENAGRYVILASMYEDAGQWEDAAKLRKLLRDRNIRKP
Sbjct: 421 ACRIHNNIELAKEVGDKLFVLDPENAGRYVILASMYEDAGQWEDAAKLRKLLRDRNIRKP 480

Query: 481 VGCSSIEVDRINHVFGKEDENHPFTEQIFDTLEKLERIMEVDFEPI 527
           VGCSSIE+DRINHVFGKEDE+HPFTEQIFDTLEKLER+M+ +FEPI
Sbjct: 481 VGCSSIEIDRINHVFGKEDESHPFTEQIFDTLEKLERVMDENFEPI 524

[Close]

BLAST of CcUC10G186410.1 vs. NCBI nr
Match: KAG6596261.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 926.4 bits (2393), Expect = 1.1e-265
Identity = 451/526 (85.74%), Postives = 481/526 (91.44%), Query Frame = 0


Query: 1   MNELCRRPGRALAWRNQPCFRMLRSFSTDRSSGKYHRDSYDYSKLLGHCRTIRSVQELHA 60
           MN L RR  RAL  RN+P FR LRS   D S  +YHRDSYDY+KLL HCR+IRSVQELHA
Sbjct: 1   MNGLYRRSSRALVSRNRPFFRFLRSIFNDWSRREYHRDSYDYTKLLQHCRSIRSVQELHA 60

Query: 61  QIIVEGQDQNEFLATKLIGKYVEHDESKMGIARKVFDRLLQRDVFAWNVVIQGYASSGPF 120
           QI+VEG DQN FLATKLIGKY E+ E KM IARKVFDRLL++DVF WNVVIQGYA+ GPF
Sbjct: 61  QIVVEGHDQNGFLATKLIGKYAEYGEEKMEIARKVFDRLLEKDVFVWNVVIQGYANWGPF 120

Query: 121 VEALNLFDEMRVSGAPTNRYTFPFVLKACGAMKNIEKGKIVHGHVLKSGLDLDLFVGNAL 180
            EALNL+DEMRV G PTNRYTFPFVLKACGAMKN +KGKIVHGHVLK GLDLDLFVGNAL
Sbjct: 121 AEALNLYDEMRVGGEPTNRYTFPFVLKACGAMKNGDKGKIVHGHVLKCGLDLDLFVGNAL 180

Query: 181 IAFYAKCQDVETARKVFDEMSLRDIVSWNSMISGYTLNGKVDDAIMLFRAMLHDQAQAAC 240
           IAFY+KCQDVETARKVFDEMSLRDIVSWNSMI+GYTLNGKVD+AIMLF AMLH+  Q AC
Sbjct: 181 IAFYSKCQDVETARKVFDEMSLRDIVSWNSMIAGYTLNGKVDEAIMLFHAMLHN--QTAC 240

Query: 241 SPDHATLVGILPACVTKSASQVGFWVHSYVIKTGMVVEAPLGSCLISMYGNCGHVNIARD 300
           SPD+ATLVGILPACVTKSASQVGFWVHSYVIKTGM V APLGSCLISMY NCGHVN+ARD
Sbjct: 241 SPDNATLVGILPACVTKSASQVGFWVHSYVIKTGMEVGAPLGSCLISMYANCGHVNVARD 300

Query: 301 VFDRIDNKNIIVWSAIIRCYGMHGFANEALNMFTRLEEVGLKPDDVIFLNLLSTCSHTGL 360
           VFDRI +KN+IVWSAIIR YGMHGFA+EALNMFT LEE GLKPD VIFLNLLSTCSH GL
Sbjct: 301 VFDRIKDKNVIVWSAIIRSYGMHGFADEALNMFTSLEEAGLKPDGVIFLNLLSTCSHAGL 360

Query: 361 VAKGREIYEKMEAYCVERKEEHYACMVDLLGRAGFLEQAVEFVEGMPVQAGKDVYGALLG 420
           V KGREIYEKMEAY  ERKEEHYACMVDLLGRAGFLEQAVEF+EGMPVQAGKDVYGALLG
Sbjct: 361 VEKGREIYEKMEAYGAERKEEHYACMVDLLGRAGFLEQAVEFIEGMPVQAGKDVYGALLG 420

Query: 421 ACRIHNNLELAKEIGEKLFVLDPENAGRYVILASMYEDAGQWEDAAKLRKLLRDRNIRKP 480
           ACRIHNN+ELAK++G+KLFVLDPENAGRYVILASMYEDAGQWEDAAKLRKLLRDRNIRKP
Sbjct: 421 ACRIHNNIELAKKVGDKLFVLDPENAGRYVILASMYEDAGQWEDAAKLRKLLRDRNIRKP 480

Query: 481 VGCSSIEVDRINHVFGKEDENHPFTEQIFDTLEKLERIMEVDFEPI 527
           VGCSSIE+DRINHVFGKEDE+HPFTEQIFDTLEKLER+M+ +FEPI
Sbjct: 481 VGCSSIEIDRINHVFGKEDESHPFTEQIFDTLEKLERVMDENFEPI 524

[Close]

BLAST of CcUC10G186410.1 vs. NCBI nr
Match: XP_023540099.1 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 925.2 bits (2390), Expect = 2.4e-265
Identity = 450/526 (85.55%), Postives = 481/526 (91.44%), Query Frame = 0


Query: 1   MNELCRRPGRALAWRNQPCFRMLRSFSTDRSSGKYHRDSYDYSKLLGHCRTIRSVQELHA 60
           MN L  R  RAL  RN+P FR LRS   D S  +YHRDSYDY+KLL HCR+IRSVQELHA
Sbjct: 1   MNGLHWRSSRALVSRNRPFFRFLRSIFNDWSRREYHRDSYDYTKLLQHCRSIRSVQELHA 60

Query: 61  QIIVEGQDQNEFLATKLIGKYVEHDESKMGIARKVFDRLLQRDVFAWNVVIQGYASSGPF 120
           QI+VEG DQN FLATKLIGKY E+ E KMGIARKVFDRLL++DVF WNVVIQGYA+ GPF
Sbjct: 61  QIVVEGHDQNGFLATKLIGKYAEYGEEKMGIARKVFDRLLEKDVFLWNVVIQGYANWGPF 120

Query: 121 VEALNLFDEMRVSGAPTNRYTFPFVLKACGAMKNIEKGKIVHGHVLKSGLDLDLFVGNAL 180
            EALNL+DEMRV G PTNRYTFPFVLKACGAMKN +KGKIVHGHVLK GLDLDLFVGNAL
Sbjct: 121 AEALNLYDEMRVGGEPTNRYTFPFVLKACGAMKNGDKGKIVHGHVLKCGLDLDLFVGNAL 180

Query: 181 IAFYAKCQDVETARKVFDEMSLRDIVSWNSMISGYTLNGKVDDAIMLFRAMLHDQAQAAC 240
           IAFY+KCQDVETARKVFDEMSLRDIVSWNSMI+GYTLNGKVD+AIM+F AMLH+  Q AC
Sbjct: 181 IAFYSKCQDVETARKVFDEMSLRDIVSWNSMIAGYTLNGKVDEAIMIFHAMLHN--QTAC 240

Query: 241 SPDHATLVGILPACVTKSASQVGFWVHSYVIKTGMVVEAPLGSCLISMYGNCGHVNIARD 300
           SPD+ATLVGILPACVTKSASQVGFWVHSY+IKTGM V APLGSCLISMY NCGHVNIARD
Sbjct: 241 SPDNATLVGILPACVTKSASQVGFWVHSYIIKTGMEVGAPLGSCLISMYANCGHVNIARD 300

Query: 301 VFDRIDNKNIIVWSAIIRCYGMHGFANEALNMFTRLEEVGLKPDDVIFLNLLSTCSHTGL 360
           VFDRI +KN+IVWSAIIR YGMHGFA+EALNMFT LEE GLKPD VIFLNLLSTCSH GL
Sbjct: 301 VFDRIKDKNVIVWSAIIRSYGMHGFADEALNMFTSLEEAGLKPDGVIFLNLLSTCSHAGL 360

Query: 361 VAKGREIYEKMEAYCVERKEEHYACMVDLLGRAGFLEQAVEFVEGMPVQAGKDVYGALLG 420
           V KGREIYE+MEAY  ERKEEHYACMVDLLGRAGFLEQAVEF+EGMPVQAGKDVYGALLG
Sbjct: 361 VEKGREIYERMEAYGAERKEEHYACMVDLLGRAGFLEQAVEFIEGMPVQAGKDVYGALLG 420

Query: 421 ACRIHNNLELAKEIGEKLFVLDPENAGRYVILASMYEDAGQWEDAAKLRKLLRDRNIRKP 480
           ACRIHNN+ELAKE+G+KLFVLDPENAGRYVILASMYEDAGQWEDAAKLRKLLRDRNIRKP
Sbjct: 421 ACRIHNNIELAKEVGDKLFVLDPENAGRYVILASMYEDAGQWEDAAKLRKLLRDRNIRKP 480

Query: 481 VGCSSIEVDRINHVFGKEDENHPFTEQIFDTLEKLERIMEVDFEPI 527
           VGCSSIE+DRINHVFGKEDE+HPFTEQIFDTLEKLER+M+ +FEPI
Sbjct: 481 VGCSSIEIDRINHVFGKEDESHPFTEQIFDTLEKLERVMDENFEPI 524

[Close]

BLAST of CcUC10G186410.1 vs. NCBI nr
Match: XP_022942131.1 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucurbita moschata] >KAG7027809.1 Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 925.2 bits (2390), Expect = 2.4e-265
Identity = 450/526 (85.55%), Postives = 481/526 (91.44%), Query Frame = 0


Query: 1   MNELCRRPGRALAWRNQPCFRMLRSFSTDRSSGKYHRDSYDYSKLLGHCRTIRSVQELHA 60
           MN L RR  RAL  RN+P FR LRS   D S  +YHRDSYDY+KLL HCR+IRSV+ELHA
Sbjct: 1   MNGLYRRSSRALVSRNRPFFRFLRSIFNDWSRREYHRDSYDYTKLLQHCRSIRSVEELHA 60

Query: 61  QIIVEGQDQNEFLATKLIGKYVEHDESKMGIARKVFDRLLQRDVFAWNVVIQGYASSGPF 120
           QI+VEG DQN FLATKLIGKY E+ E KM IARKVFDRLL++DVF WNVVIQGYA+ GPF
Sbjct: 61  QIVVEGHDQNGFLATKLIGKYAEYGEEKMEIARKVFDRLLEKDVFVWNVVIQGYANWGPF 120

Query: 121 VEALNLFDEMRVSGAPTNRYTFPFVLKACGAMKNIEKGKIVHGHVLKSGLDLDLFVGNAL 180
            EALNL+DEMRV G PTNRYTFPFVLKACGAMKN +KGKIVHGHVLK GLDLDLFVGNAL
Sbjct: 121 AEALNLYDEMRVGGEPTNRYTFPFVLKACGAMKNGDKGKIVHGHVLKCGLDLDLFVGNAL 180

Query: 181 IAFYAKCQDVETARKVFDEMSLRDIVSWNSMISGYTLNGKVDDAIMLFRAMLHDQAQAAC 240
           IAFY+KCQDVETARKVFDEMSLRDIVSWNSMI+GYTLNGKVD+AIMLF AMLH+  Q AC
Sbjct: 181 IAFYSKCQDVETARKVFDEMSLRDIVSWNSMIAGYTLNGKVDEAIMLFHAMLHN--QTAC 240

Query: 241 SPDHATLVGILPACVTKSASQVGFWVHSYVIKTGMVVEAPLGSCLISMYGNCGHVNIARD 300
           SPD+ATLVGILPACVTKSASQVGFWVHSYVIKTGM V APLGSCLISMY NCGHVN+ARD
Sbjct: 241 SPDNATLVGILPACVTKSASQVGFWVHSYVIKTGMEVGAPLGSCLISMYANCGHVNVARD 300

Query: 301 VFDRIDNKNIIVWSAIIRCYGMHGFANEALNMFTRLEEVGLKPDDVIFLNLLSTCSHTGL 360
           VFDRI +KN+IVWSAIIR YGMHGFA+EALNMFT LEE GLKPD VIFLNLLSTCSH GL
Sbjct: 301 VFDRIKDKNVIVWSAIIRSYGMHGFADEALNMFTSLEEAGLKPDGVIFLNLLSTCSHAGL 360

Query: 361 VAKGREIYEKMEAYCVERKEEHYACMVDLLGRAGFLEQAVEFVEGMPVQAGKDVYGALLG 420
           V KGREIYEKMEAY  ERKEEHYACMVDLLGRAGFLEQAVEF+EGMPVQAGKDVYGALLG
Sbjct: 361 VEKGREIYEKMEAYGAERKEEHYACMVDLLGRAGFLEQAVEFIEGMPVQAGKDVYGALLG 420

Query: 421 ACRIHNNLELAKEIGEKLFVLDPENAGRYVILASMYEDAGQWEDAAKLRKLLRDRNIRKP 480
           ACRIHNN+ELAK++G+KLFVLDPENAGRYVILASMYEDAGQWEDAAKLRKLLRDRNIRKP
Sbjct: 421 ACRIHNNIELAKKVGDKLFVLDPENAGRYVILASMYEDAGQWEDAAKLRKLLRDRNIRKP 480

Query: 481 VGCSSIEVDRINHVFGKEDENHPFTEQIFDTLEKLERIMEVDFEPI 527
           VGCSSIE+DRINHVFGKEDE+HPFTEQIFDTLEKLER+M+ +FEPI
Sbjct: 481 VGCSSIEIDRINHVFGKEDESHPFTEQIFDTLEKLERVMDENFEPI 524

[Close]

BLAST of CcUC10G186410.1 vs. ExPASy Swiss-Prot
Match: Q9STF3 (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR2 PE=2 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 5.8e-100
Identity = 179/479 (37.37%), Postives = 292/479 (60.96%), Query Frame = 0


Query: 47  GHCRTIRSVQELHAQIIVEGQDQNEFLATKLIGKYVEHDESKMGIARKVFDRLLQRDVFA 106
           GH  ++     +H  I+  G DQ+ FLATKLIG Y   D   +  ARKVFD+  +R ++ 
Sbjct: 88  GHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMY--SDLGSVDYARKVFDKTRKRTIYV 147

Query: 107 WNVVIQGYASSGPFVEALNLFDEMRVSGAPTNRYTFPFVLKACGA----MKNIEKGKIVH 166
           WN + +    +G   E L L+ +M   G  ++R+T+ +VLKAC A    + ++ KGK +H
Sbjct: 148 WNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIH 207

Query: 167 GHVLKSGLDLDLFVGNALIAFYAKCQDVETARKVFDEMSLRDIVSWNSMISGYTLNGKVD 226
            H+ + G    +++   L+  YA+   V+ A  VF  M +R++VSW++MI+ Y  NGK  
Sbjct: 208 AHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAF 267

Query: 227 DAIMLFRAMLHDQAQAACSPDHATLVGILPACVTKSASQVGFWVHSYVIKTGMVVEAPLG 286
           +A+  FR M+ +   +  SP+  T+V +L AC + +A + G  +H Y+++ G+    P+ 
Sbjct: 268 EALRTFREMMRETKDS--SPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVI 327

Query: 287 SCLISMYGNCGHVNIARDVFDRIDNKNIIVWSAIIRCYGMHGFANEALNMFTRLEEVGLK 346
           S L++MYG CG + + + VFDR+ +++++ W+++I  YG+HG+  +A+ +F  +   G  
Sbjct: 328 SALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGAS 387

Query: 347 PDDVIFLNLLSTCSHTGLVAKGREIYEKM-EAYCVERKEEHYACMVDLLGRAGFLEQAVE 406
           P  V F+++L  CSH GLV +G+ ++E M   + ++ + EHYACMVDLLGRA  L++A +
Sbjct: 388 PTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAK 447

Query: 407 FVEGMPVQAGKDVYGALLGACRIHNNLELAKEIGEKLFVLDPENAGRYVILASMYEDAGQ 466
            V+ M  + G  V+G+LLG+CRIH N+ELA+    +LF L+P+NAG YV+LA +Y +A  
Sbjct: 448 MVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQM 507

Query: 467 WEDAAKLRKLLRDRNIRKPVGCSSIEVDRINHVFGKEDENHPFTEQIFDTLEKLERIME 521
           W++  +++KLL  R ++K  G   +EV R  + F   DE +P  EQI   L KL   M+
Sbjct: 508 WDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMK 562

[Close]

BLAST of CcUC10G186410.1 vs. ExPASy Swiss-Prot
Match: Q9FI80 (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 7.8e-97
Identity = 186/533 (34.90%), Postives = 299/533 (56.10%), Query Frame = 0


Query: 46  LGHCRTIRSVQELHAQIIVEGQDQNEFLATKLIGKYVEHD--ESKMGIARKVFDRLLQRD 105
           + +CRTIR + ++HA  I  GQ ++   A +++      D     +  A K+F+++ QR+
Sbjct: 30  INNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRN 89

Query: 106 VFAWNVVIQGYASS--GPFVEALNLFDEMRVSG-APTNRYTFPFVLKACGAMKNIEKGKI 165
            F+WN +I+G++ S     + A+ LF EM        NR+TFP VLKAC     I++GK 
Sbjct: 90  CFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQ 149

Query: 166 VHGHVLKSGLDLDLFVGNALIAFYAKC--------------------------------- 225
           +HG  LK G   D FV + L+  Y  C                                 
Sbjct: 150 IHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIV 209

Query: 226 ------------QDVETARKVFDEMSLRDIVSWNSMISGYTLNGKVDDAIMLFRAMLHDQ 285
                        D + AR +FD+M  R +VSWN+MISGY+LNG   DA+ +FR M    
Sbjct: 210 LWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREM---- 269

Query: 286 AQAACSPDHATLVGILPACVTKSASQVGFWVHSYVIKTGMVVEAPLGSCLISMYGNCGHV 345
            +    P++ TLV +LPA     + ++G W+H Y   +G+ ++  LGS LI MY  CG +
Sbjct: 270 KKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGII 329

Query: 346 NIARDVFDRIDNKNIIVWSAIIRCYGMHGFANEALNMFTRLEEVGLKPDDVIFLNLLSTC 405
             A  VF+R+  +N+I WSA+I  + +HG A +A++ F ++ + G++P DV ++NLL+ C
Sbjct: 330 EKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTAC 389

Query: 406 SHTGLVAKGREIYEKMEAY-CVERKEEHYACMVDLLGRAGFLEQAVEFVEGMPVQAGKDV 465
           SH GLV +GR  + +M +   +E + EHY CMVDLLGR+G L++A EF+  MP++    +
Sbjct: 390 SHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVI 449

Query: 466 YGALLGACRIHNNLELAKEIGEKLFVLDPENAGRYVILASMYEDAGQWEDAAKLRKLLRD 525
           + ALLGACR+  N+E+ K +   L  + P ++G YV L++MY   G W + +++R  +++
Sbjct: 450 WKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKE 509

Query: 526 RNIRKPVGCSSIEVDRINHVFGKEDENHPFTEQIFDTLEKL-ERIMEVDFEPI 527
           ++IRK  GCS I++D + H F  ED++HP  ++I   L ++ +++    + PI
Sbjct: 510 KDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPI 558

[Close]

BLAST of CcUC10G186410.1 vs. ExPASy Swiss-Prot
Match: O82380 (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 3.0e-96
Identity = 184/531 (34.65%), Postives = 302/531 (56.87%), Query Frame = 0


Query: 31  SSGKYHRDSYDYSKLLGHCRTIRSV---QELHAQIIVEGQDQNEFLATKLIGKYVEHDES 90
           S  + + + Y +  L+     + S+   Q LH   +      + F+A  LI  Y    + 
Sbjct: 123 SESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGD- 182

Query: 91  KMGIARKVFDRLLQRDVFAWNVVIQGYASSGPFVEALNLFDEMRVSGAPTNRYTFPFVLK 150
            +  A KVF  + ++DV +WN +I G+   G   +AL LF +M       +  T   VL 
Sbjct: 183 -LDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLS 242

Query: 151 ACGAMKNIEKGKIVHGHVLKSGLDLDLFVGNALIAFYAKC-------------------- 210
           AC  ++N+E G+ V  ++ ++ ++++L + NA++  Y KC                    
Sbjct: 243 ACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVT 302

Query: 211 -----------QDVETARKVFDEMSLRDIVSWNSMISGYTLNGKVDDAIMLFRAMLHDQA 270
                      +D E AR+V + M  +DIV+WN++IS Y  NGK ++A+++F  +   Q 
Sbjct: 303 WTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHEL---QL 362

Query: 271 QAACSPDHATLVGILPACVTKSASQVGFWVHSYVIKTGMVVEAPLGSCLISMYGNCGHVN 330
           Q     +  TLV  L AC    A ++G W+HSY+ K G+ +   + S LI MY  CG + 
Sbjct: 363 QKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLE 422

Query: 331 IARDVFDRIDNKNIIVWSAIIRCYGMHGFANEALNMFTRLEEVGLKPDDVIFLNLLSTCS 390
            +R+VF+ ++ +++ VWSA+I    MHG  NEA++MF +++E  +KP+ V F N+   CS
Sbjct: 423 KSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACS 482

Query: 391 HTGLVAKGREIYEKMEA-YCVERKEEHYACMVDLLGRAGFLEQAVEFVEGMPVQAGKDVY 450
           HTGLV +   ++ +ME+ Y +  +E+HYAC+VD+LGR+G+LE+AV+F+E MP+     V+
Sbjct: 483 HTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVW 542

Query: 451 GALLGACRIHNNLELAKEIGEKLFVLDPENAGRYVILASMYEDAGQWEDAAKLRKLLRDR 510
           GALLGAC+IH NL LA+    +L  L+P N G +V+L+++Y   G+WE+ ++LRK +R  
Sbjct: 543 GALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVT 602

Query: 511 NIRKPVGCSSIEVDRINHVFGKEDENHPFTEQIFDTL-EKLERIMEVDFEP 526
            ++K  GCSSIE+D + H F   D  HP +E+++  L E +E++    +EP
Sbjct: 603 GLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEP 648

[Close]

BLAST of CcUC10G186410.1 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.1e-95
Identity = 180/518 (34.75%), Postives = 300/518 (57.92%), Query Frame = 0


Query: 38  DSYDYSKLLGHC---RTIRSVQELHAQIIVEGQDQNEFLATKLIGKYVEH---------- 97
           +SY +  +L  C   +  +  Q++H  ++  G D + ++ T LI  YV++          
Sbjct: 133 NSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVF 192

Query: 98  DESK-------------------MGIARKVFDRLLQRDVFAWNVVIQGYASSGPFVEALN 157
           D+S                    +  A+K+FD +  +DV +WN +I GYA +G + EAL 
Sbjct: 193 DKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALE 252

Query: 158 LFDEMRVSGAPTNRYTFPFVLKACGAMKNIEKGKIVHGHVLKSGLDLDLFVGNALIAFYA 217
           LF +M  +    +  T   V+ AC    +IE G+ VH  +   G   +L + NALI  Y+
Sbjct: 253 LFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYS 312

Query: 218 KCQDVETARKVFDEMSLRDIVSWNSMISGYTLNGKVDDAIMLFRAMLHDQAQAACSPDHA 277
           KC ++ETA  +F+ +  +D++SWN++I GYT      +A++LF+ ML    ++  +P+  
Sbjct: 313 KCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEML----RSGETPNDV 372

Query: 278 TLVGILPACVTKSASQVGFWVHSYVIK--TGMVVEAPLGSCLISMYGNCGHVNIARDVFD 337
           T++ ILPAC    A  +G W+H Y+ K   G+   + L + LI MY  CG +  A  VF+
Sbjct: 373 TMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFN 432

Query: 338 RIDNKNIIVWSAIIRCYGMHGFANEALNMFTRLEEVGLKPDDVIFLNLLSTCSHTGLVAK 397
            I +K++  W+A+I  + MHG A+ + ++F+R+ ++G++PDD+ F+ LLS CSH+G++  
Sbjct: 433 SILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDL 492

Query: 398 GREIYEKM-EAYCVERKEEHYACMVDLLGRAGFLEQAVEFVEGMPVQAGKDVYGALLGAC 457
           GR I+  M + Y +  K EHY CM+DLLG +G  ++A E +  M ++    ++ +LL AC
Sbjct: 493 GRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKAC 552

Query: 458 RIHNNLELAKEIGEKLFVLDPENAGRYVILASMYEDAGQWEDAAKLRKLLRDRNIRKPVG 517
           ++H N+EL +   E L  ++PEN G YV+L+++Y  AG+W + AK R LL D+ ++K  G
Sbjct: 553 KMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPG 612

Query: 518 CSSIEVDRINHVFGKEDENHPFTEQIFDTLEKLERIME 521
           CSSIE+D + H F   D+ HP   +I+  LE++E ++E
Sbjct: 613 CSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLE 646

[Close]

BLAST of CcUC10G186410.1 vs. ExPASy Swiss-Prot
Match: Q9SN39 (Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DOT4 PE=2 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 1.6e-94
Identity = 168/437 (38.44%), Postives = 269/437 (61.56%), Query Frame = 0


Query: 92  ARKVFDRLLQRDVFAWNVVIQGYASSGPFVEALNLFDEMRVSGAPTNRYTFPFVLKACGA 151
           A+ VF  +  R V ++  +I GYA  G   EA+ LF+EM   G   + YT   VL  C  
Sbjct: 350 AKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCAR 409

Query: 152 MKNIEKGKIVHGHVLKSGLDLDLFVGNALIAFYAKCQDVETARKVFDEMSLRDIVSWNSM 211
            + +++GK VH  + ++ L  D+FV NAL+  YAKC  ++ A  VF EM ++DI+SWN++
Sbjct: 410 YRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTI 469

Query: 212 ISGYTLNGKVDDAIMLFRAMLHDQAQAACSPDHATLVGILPACVTKSASQVGFWVHSYVI 271
           I GY+ N   ++A+ LF  +L ++     SPD  T+  +LPAC + SA   G  +H Y++
Sbjct: 470 IGGYSKNCYANEALSLFNLLLEEK---RFSPDERTVACVLPACASLSAFDKGREIHGYIM 529

Query: 272 KTGMVVEAPLGSCLISMYGNCGHVNIARDVFDRIDNKNIIVWSAIIRCYGMHGFANEALN 331
           + G   +  + + L+ MY  CG + +A  +FD I +K+++ W+ +I  YGMHGF  EA+ 
Sbjct: 530 RNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIA 589

Query: 332 MFTRLEEVGLKPDDVIFLNLLSTCSHTGLVAKGREIYEKMEAYC-VERKEEHYACMVDLL 391
           +F ++ + G++ D++ F++LL  CSH+GLV +G   +  M   C +E   EHYAC+VD+L
Sbjct: 590 LFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDML 649

Query: 392 GRAGFLEQAVEFVEGMPVQAGKDVYGALLGACRIHNNLELAKEIGEKLFVLDPENAGRYV 451
            R G L +A  F+E MP+     ++GALL  CRIH++++LA+++ EK+F L+PEN G YV
Sbjct: 650 ARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYV 709

Query: 452 ILASMYEDAGQWEDAAKLRKLLRDRNIRKPVGCSSIEVDRINHVFGKEDENHPFTEQIFD 511
           ++A++Y +A +WE   +LRK +  R +RK  GCS IE+    ++F   D ++P TE I  
Sbjct: 710 LMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEA 769

Query: 512 TLEKLE-RIMEVDFEPI 527
            L K+  R++E  + P+
Sbjct: 770 FLRKVRARMIEEGYSPL 783

[Close]

BLAST of CcUC10G186410.1 vs. ExPASy TrEMBL
Match: A0A6J1I919 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111470278 PE=4 SV=1)

HSP 1 Score: 933.3 bits (2411), Expect = 4.4e-268
Identity = 456/526 (86.69%), Postives = 482/526 (91.63%), Query Frame = 0


Query: 1   MNELCRRPGRALAWRNQPCFRMLRSFSTDRSSGKYHRDSYDYSKLLGHCRTIRSVQELHA 60
           MN L RR  RAL  R QP FR LRS   D S  +YHRDSYDY+KLL HCR+IRSVQELHA
Sbjct: 1   MNGLYRRYSRALVSRKQPFFRFLRSIFNDWSRREYHRDSYDYTKLLQHCRSIRSVQELHA 60

Query: 61  QIIVEGQDQNEFLATKLIGKYVEHDESKMGIARKVFDRLLQRDVFAWNVVIQGYASSGPF 120
           QI+VEG DQN FLATKLIGKY E+ E KMGIARKVFDRLL++DVF WNVVIQGYA+ GPF
Sbjct: 61  QIVVEGHDQNGFLATKLIGKYAEYGEEKMGIARKVFDRLLEKDVFVWNVVIQGYANWGPF 120

Query: 121 VEALNLFDEMRVSGAPTNRYTFPFVLKACGAMKNIEKGKIVHGHVLKSGLDLDLFVGNAL 180
            EALNL+DEMRV G PTNRYTFPFVLKACGAMKN EKGKIVHGHVLK GLDLDLFVGNAL
Sbjct: 121 AEALNLYDEMRVGGEPTNRYTFPFVLKACGAMKNSEKGKIVHGHVLKCGLDLDLFVGNAL 180

Query: 181 IAFYAKCQDVETARKVFDEMSLRDIVSWNSMISGYTLNGKVDDAIMLFRAMLHDQAQAAC 240
           IAFY+KCQDVETARKVFDEMSLRDIVSWNSMI+GYTLNGKVD+AIMLF AMLH+  Q AC
Sbjct: 181 IAFYSKCQDVETARKVFDEMSLRDIVSWNSMIAGYTLNGKVDEAIMLFHAMLHN--QTAC 240

Query: 241 SPDHATLVGILPACVTKSASQVGFWVHSYVIKTGMVVEAPLGSCLISMYGNCGHVNIARD 300
           SPD+ATLVGILPACVTKSASQVGFWVHSYVIKTGM V APLGSCLISMY NCGHVNIARD
Sbjct: 241 SPDNATLVGILPACVTKSASQVGFWVHSYVIKTGMEVGAPLGSCLISMYANCGHVNIARD 300

Query: 301 VFDRIDNKNIIVWSAIIRCYGMHGFANEALNMFTRLEEVGLKPDDVIFLNLLSTCSHTGL 360
           VFDRI +KN+IVWSAIIR YGMHGFA+EALNMFT LEEVGLKPD VIFLNLLSTCSH GL
Sbjct: 301 VFDRIKDKNVIVWSAIIRSYGMHGFADEALNMFTSLEEVGLKPDGVIFLNLLSTCSHAGL 360

Query: 361 VAKGREIYEKMEAYCVERKEEHYACMVDLLGRAGFLEQAVEFVEGMPVQAGKDVYGALLG 420
           V KGREIYEKMEAY  ERKEEHYACMVDLLGRAGFLEQAVEF+EGMPVQAGKDVYGALLG
Sbjct: 361 VEKGREIYEKMEAYGAERKEEHYACMVDLLGRAGFLEQAVEFIEGMPVQAGKDVYGALLG 420

Query: 421 ACRIHNNLELAKEIGEKLFVLDPENAGRYVILASMYEDAGQWEDAAKLRKLLRDRNIRKP 480
           ACRIHNN+ELAKE+G+KLFVLDPENAGRYVILASMYEDAGQWEDAAKLRKLLRDRNIRKP
Sbjct: 421 ACRIHNNIELAKEVGDKLFVLDPENAGRYVILASMYEDAGQWEDAAKLRKLLRDRNIRKP 480

Query: 481 VGCSSIEVDRINHVFGKEDENHPFTEQIFDTLEKLERIMEVDFEPI 527
           VGCSSIE+DRINHVFGKEDE+HPFTEQIFDTLEKLER+M+ +FEPI
Sbjct: 481 VGCSSIEIDRINHVFGKEDESHPFTEQIFDTLEKLERVMDENFEPI 524

[Close]

BLAST of CcUC10G186410.1 vs. ExPASy TrEMBL
Match: A0A6J1FMZ9 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111447289 PE=4 SV=1)

HSP 1 Score: 925.2 bits (2390), Expect = 1.2e-265
Identity = 450/526 (85.55%), Postives = 481/526 (91.44%), Query Frame = 0


Query: 1   MNELCRRPGRALAWRNQPCFRMLRSFSTDRSSGKYHRDSYDYSKLLGHCRTIRSVQELHA 60
           MN L RR  RAL  RN+P FR LRS   D S  +YHRDSYDY+KLL HCR+IRSV+ELHA
Sbjct: 1   MNGLYRRSSRALVSRNRPFFRFLRSIFNDWSRREYHRDSYDYTKLLQHCRSIRSVEELHA 60

Query: 61  QIIVEGQDQNEFLATKLIGKYVEHDESKMGIARKVFDRLLQRDVFAWNVVIQGYASSGPF 120
           QI+VEG DQN FLATKLIGKY E+ E KM IARKVFDRLL++DVF WNVVIQGYA+ GPF
Sbjct: 61  QIVVEGHDQNGFLATKLIGKYAEYGEEKMEIARKVFDRLLEKDVFVWNVVIQGYANWGPF 120

Query: 121 VEALNLFDEMRVSGAPTNRYTFPFVLKACGAMKNIEKGKIVHGHVLKSGLDLDLFVGNAL 180
            EALNL+DEMRV G PTNRYTFPFVLKACGAMKN +KGKIVHGHVLK GLDLDLFVGNAL
Sbjct: 121 AEALNLYDEMRVGGEPTNRYTFPFVLKACGAMKNGDKGKIVHGHVLKCGLDLDLFVGNAL 180

Query: 181 IAFYAKCQDVETARKVFDEMSLRDIVSWNSMISGYTLNGKVDDAIMLFRAMLHDQAQAAC 240
           IAFY+KCQDVETARKVFDEMSLRDIVSWNSMI+GYTLNGKVD+AIMLF AMLH+  Q AC
Sbjct: 181 IAFYSKCQDVETARKVFDEMSLRDIVSWNSMIAGYTLNGKVDEAIMLFHAMLHN--QTAC 240

Query: 241 SPDHATLVGILPACVTKSASQVGFWVHSYVIKTGMVVEAPLGSCLISMYGNCGHVNIARD 300
           SPD+ATLVGILPACVTKSASQVGFWVHSYVIKTGM V APLGSCLISMY NCGHVN+ARD
Sbjct: 241 SPDNATLVGILPACVTKSASQVGFWVHSYVIKTGMEVGAPLGSCLISMYANCGHVNVARD 300

Query: 301 VFDRIDNKNIIVWSAIIRCYGMHGFANEALNMFTRLEEVGLKPDDVIFLNLLSTCSHTGL 360
           VFDRI +KN+IVWSAIIR YGMHGFA+EALNMFT LEE GLKPD VIFLNLLSTCSH GL
Sbjct: 301 VFDRIKDKNVIVWSAIIRSYGMHGFADEALNMFTSLEEAGLKPDGVIFLNLLSTCSHAGL 360

Query: 361 VAKGREIYEKMEAYCVERKEEHYACMVDLLGRAGFLEQAVEFVEGMPVQAGKDVYGALLG 420
           V KGREIYEKMEAY  ERKEEHYACMVDLLGRAGFLEQAVEF+EGMPVQAGKDVYGALLG
Sbjct: 361 VEKGREIYEKMEAYGAERKEEHYACMVDLLGRAGFLEQAVEFIEGMPVQAGKDVYGALLG 420

Query: 421 ACRIHNNLELAKEIGEKLFVLDPENAGRYVILASMYEDAGQWEDAAKLRKLLRDRNIRKP 480
           ACRIHNN+ELAK++G+KLFVLDPENAGRYVILASMYEDAGQWEDAAKLRKLLRDRNIRKP
Sbjct: 421 ACRIHNNIELAKKVGDKLFVLDPENAGRYVILASMYEDAGQWEDAAKLRKLLRDRNIRKP 480

Query: 481 VGCSSIEVDRINHVFGKEDENHPFTEQIFDTLEKLERIMEVDFEPI 527
           VGCSSIE+DRINHVFGKEDE+HPFTEQIFDTLEKLER+M+ +FEPI
Sbjct: 481 VGCSSIEIDRINHVFGKEDESHPFTEQIFDTLEKLERVMDENFEPI 524

[Close]

BLAST of CcUC10G186410.1 vs. ExPASy TrEMBL
Match: A0A6J1CVV9 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111014767 PE=4 SV=1)

HSP 1 Score: 907.9 bits (2345), Expect = 2.0e-260
Identity = 437/526 (83.08%), Postives = 480/526 (91.25%), Query Frame = 0


Query: 1   MNELCRRPGRALAWRNQPCFRMLRSFSTDRSSGKYHRDSYDYSKLLGHCRTIRSVQELHA 60
           M  L RR  R L  +NQP FR LR F +DRS G+Y RDSYDY+ LL HCRTIRSVQELHA
Sbjct: 1   MRGLRRRLSRTLVLKNQPFFRFLRFFLSDRSPGEYRRDSYDYTNLLQHCRTIRSVQELHA 60

Query: 61  QIIVEGQDQNEFLATKLIGKYVEHDESKMGIARKVFDRLLQRDVFAWNVVIQGYASSGPF 120
           QIIVEG DQN FLATKLIGKY EH +SKMG+ARKVFDRL++RDVF WNVVI+GYA+ GPF
Sbjct: 61  QIIVEGLDQNGFLATKLIGKYAEHGDSKMGVARKVFDRLVERDVFVWNVVIRGYANWGPF 120

Query: 121 VEALNLFDEMRVSGAPTNRYTFPFVLKACGAMKNIEKGKIVHGHVLKSGLDLDLFVGNAL 180
            EALNLFDEMRV+GAPTNRYTFPFVLKACGAMKN +KGK+VHGHVLKSGLDLDLFVGNAL
Sbjct: 121 DEALNLFDEMRVNGAPTNRYTFPFVLKACGAMKNRDKGKVVHGHVLKSGLDLDLFVGNAL 180

Query: 181 IAFYAKCQDVETARKVFDEMSLRDIVSWNSMISGYTLNGKVDDAIMLFRAMLHDQAQAAC 240
           IAFYAKC D+ET RKVFDEM L+DIVSWNSMI+G+T NGKVD+AIMLF AM+H+  Q AC
Sbjct: 181 IAFYAKCLDIETTRKVFDEMPLKDIVSWNSMIAGFTSNGKVDEAIMLFHAMVHN--QGAC 240

Query: 241 SPDHATLVGILPACVTKSASQVGFWVHSYVIKTGMVVEAPLGSCLISMYGNCGHVNIARD 300
           SPD+ATLVGILPACV+KSA+QVGFWVHSYVIKTGM V APLGSCLISMY NCGHVNIARD
Sbjct: 241 SPDNATLVGILPACVSKSAAQVGFWVHSYVIKTGMQVGAPLGSCLISMYANCGHVNIARD 300

Query: 301 VFDRIDNKNIIVWSAIIRCYGMHGFANEALNMFTRLEEVGLKPDDVIFLNLLSTCSHTGL 360
           VF+RID+KN+IVWSA+IRCYGMHG A+EAL MFT LEEVGLKPD VIFLNLLSTCSH GL
Sbjct: 301 VFNRIDDKNVIVWSAVIRCYGMHGLADEALTMFTSLEEVGLKPDGVIFLNLLSTCSHAGL 360

Query: 361 VAKGREIYEKMEAYCVERKEEHYACMVDLLGRAGFLEQAVEFVEGMPVQAGKDVYGALLG 420
           VAKGR+IYEKME Y VERKEEHYACMVDLLGRAGF++QAV+F+EGMP+QAGKDVYGALLG
Sbjct: 361 VAKGRQIYEKMETYGVERKEEHYACMVDLLGRAGFVDQAVKFIEGMPMQAGKDVYGALLG 420

Query: 421 ACRIHNNLELAKEIGEKLFVLDPENAGRYVILASMYEDAGQWEDAAKLRKLLRDRNIRKP 480
           ACRIHNN+E+AKE  EKLFVLDPENAGRYVILASM+EDAGQWEDAAKLRKLLRDR I+KP
Sbjct: 421 ACRIHNNIEVAKEAAEKLFVLDPENAGRYVILASMHEDAGQWEDAAKLRKLLRDRKIKKP 480

Query: 481 VGCSSIEVDRINHVFGKEDENHPFTEQIFDTLEKLERIMEVDFEPI 527
           VGCSSIE+DRI+HVFGKEDE+HPF+EQIFDTLEKLERIME DFEP+
Sbjct: 481 VGCSSIEIDRIHHVFGKEDESHPFSEQIFDTLEKLERIMEEDFEPV 524

[Close]

BLAST of CcUC10G186410.1 vs. ExPASy TrEMBL
Match: A0A0A0L101 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002500 PE=4 SV=1)

HSP 1 Score: 894.8 bits (2311), Expect = 1.7e-256
Identity = 437/528 (82.77%), Postives = 470/528 (89.02%), Query Frame = 0


Query: 1   MNELCRRPGRALAWRNQPCFRMLRSFSTDRSSGKYHRDSYDYSKLLGHCRTIRSVQELHA 60
           MN LCRR  +AL +RNQP       F ++ S GKYHRDSY + KLLGHCR+IRSVQELHA
Sbjct: 1   MNGLCRRTWQALTFRNQP-------FFSEWSFGKYHRDSYGFIKLLGHCRSIRSVQELHA 60

Query: 61  QIIVEGQDQNEFLATKLIGKYVEHDES--KMGIARKVFDRLLQRDVFAWNVVIQGYASSG 120
           QI+VEG DQN F+A KLIGKYVEHDE   KMG ARKVFD L++RDVF WNVVIQGYAS G
Sbjct: 61  QILVEGLDQNGFVAAKLIGKYVEHDEGEVKMGTARKVFDTLVRRDVFVWNVVIQGYASLG 120

Query: 121 PFVEALNLFDEMRVSGAPTNRYTFPFVLKACGAMKNIEKGKIVHGHVLKSGLDLDLFVGN 180
           PFVEALNLFDEMRVSG PTNRYTFPFVLKACGAMKN +KG+IVHGHV+K GLDLDLFVGN
Sbjct: 121 PFVEALNLFDEMRVSGEPTNRYTFPFVLKACGAMKNSDKGEIVHGHVVKCGLDLDLFVGN 180

Query: 181 ALIAFYAKCQDVETARKVFDEMSLRDIVSWNSMISGYTLNGKVDDAIMLFRAMLHDQAQA 240
           ALIAFY+KCQDVETARKVFD+MSLRDIVSWNSMI GYTLNGK D+AIM F AMLH+QA  
Sbjct: 181 ALIAFYSKCQDVETARKVFDDMSLRDIVSWNSMIVGYTLNGKEDEAIMFFHAMLHNQAD- 240

Query: 241 ACSPDHATLVGILPACVTKSASQVGFWVHSYVIKTGMVVEAPLGSCLISMYGNCGHVNIA 300
            C+PD ATLV ILPAC TKSASQVGFWVHSYVIKTG+ V APLGSCLI MYGNCGHVNIA
Sbjct: 241 -CTPDSATLVAILPACATKSASQVGFWVHSYVIKTGIEVGAPLGSCLICMYGNCGHVNIA 300

Query: 301 RDVFDRIDNKNIIVWSAIIRCYGMHGFANEALNMFTRLEEVGLKPDDVIFLNLLSTCSHT 360
           RDVFDRID+KN+IVWSAIIRCYGMHGFA+EA NMF RLEE G+KPD +IFLNLLS CSH 
Sbjct: 301 RDVFDRIDDKNVIVWSAIIRCYGMHGFADEAFNMFRRLEEAGVKPDGLIFLNLLSACSHA 360

Query: 361 GLVAKGREIYEKMEAYCVERKEEHYACMVDLLGRAGFLEQAVEFVEGMPVQAGKDVYGAL 420
           GLVAKG EIYEKMEAY +ERK+ HYACMVDLLGRAGFLEQAVEF+EGMPVQAGKDVYGAL
Sbjct: 361 GLVAKGHEIYEKMEAYGLERKDNHYACMVDLLGRAGFLEQAVEFIEGMPVQAGKDVYGAL 420

Query: 421 LGACRIHNNLELAKEIGEKLFVLDPENAGRYVILASMYEDAGQWEDAAKLRKLLRDRNIR 480
           LGACRIHNNLELAKE+GEKLF+LDPE A RYV LA+MYEDAGQWEDAAKLRKLLRDRNIR
Sbjct: 421 LGACRIHNNLELAKEVGEKLFILDPEKASRYVTLATMYEDAGQWEDAAKLRKLLRDRNIR 480

Query: 481 KPVGCSSIEVDRINHVFGKEDENHPFTEQIFDTLEKLERIMEVDFEPI 527
           KP GCSSIEVDRI+HVFGK+DE HP TE+IFDTLEKLERIME DFEPI
Sbjct: 481 KPAGCSSIEVDRIHHVFGKKDETHPLTEEIFDTLEKLERIMEEDFEPI 519

[Close]

BLAST of CcUC10G186410.1 vs. ExPASy TrEMBL
Match: A0A5A7UCB1 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00430 PE=4 SV=1)

HSP 1 Score: 883.2 bits (2281), Expect = 5.2e-253
Identity = 431/528 (81.63%), Postives = 470/528 (89.02%), Query Frame = 0


Query: 1   MNELCRRPGRALAWRNQPCFRMLRSFSTDRSSGKYHRDSYDYSKLLGHCRTIRSVQELHA 60
           MN L RR  +AL +R+QP       F ++R SGKYHRDSYD+ KLLGHCRTIRSVQELHA
Sbjct: 1   MNGLYRRTWQALTFRSQP-------FFSERRSGKYHRDSYDFMKLLGHCRTIRSVQELHA 60

Query: 61  QIIVEGQDQNEFLATKLIGKYVE--HDESKMGIARKVFDRLLQRDVFAWNVVIQGYASSG 120
           QI+VEG DQN FLATKLIGKYVE    ESKMG ARKVFDRLLQRDVF WNVVIQGYAS G
Sbjct: 61  QILVEGLDQNGFLATKLIGKYVELGEGESKMGTARKVFDRLLQRDVFLWNVVIQGYASFG 120

Query: 121 PFVEALNLFDEMRVSGAPTNRYTFPFVLKACGAMKNIEKGKIVHGHVLKSGLDLDLFVGN 180
           PFVEALNLFDEMRVSG PTNRYTFPFVLKACGA+KN +KG+IVHG+V+K GLDLDLFVGN
Sbjct: 121 PFVEALNLFDEMRVSGEPTNRYTFPFVLKACGALKNSDKGEIVHGYVVKCGLDLDLFVGN 180

Query: 181 ALIAFYAKCQDVETARKVFDEMSLRDIVSWNSMISGYTLNGKVDDAIMLFRAMLHDQAQA 240
           ALI+ Y+KCQDVETARKVFD+MSLRD VSWNSMI GYTLN + DDAIM F AMLH+QA  
Sbjct: 181 ALISCYSKCQDVETARKVFDDMSLRDTVSWNSMIVGYTLNEREDDAIMFFHAMLHNQAD- 240

Query: 241 ACSPDHATLVGILPACVTKSASQVGFWVHSYVIKTGMVVEAPLGSCLISMYGNCGHVNIA 300
            C PD ATLV ILPAC TKSASQVGFWVHSY+IKTGM V A LGSCLISMYGNCGH+NIA
Sbjct: 241 -CLPDDATLVAILPACATKSASQVGFWVHSYIIKTGMEVGASLGSCLISMYGNCGHINIA 300

Query: 301 RDVFDRIDNKNIIVWSAIIRCYGMHGFANEALNMFTRLEEVGLKPDDVIFLNLLSTCSHT 360
           RDVF+RIDNKN+IVWSAIIRCYGMHG A+EALNMF RLEEVG+KPD +IFLNLLS CSH 
Sbjct: 301 RDVFNRIDNKNVIVWSAIIRCYGMHGLADEALNMFRRLEEVGVKPDGLIFLNLLSACSHA 360

Query: 361 GLVAKGREIYEKMEAYCVERKEEHYACMVDLLGRAGFLEQAVEFVEGMPVQAGKDVYGAL 420
           GLVAKGREIY+KMEAY +ER ++HYACMVDLL RAGFLEQA EF+E MPVQAGKDVYGAL
Sbjct: 361 GLVAKGREIYKKMEAYGLERNDKHYACMVDLLARAGFLEQAAEFIEAMPVQAGKDVYGAL 420

Query: 421 LGACRIHNNLELAKEIGEKLFVLDPENAGRYVILASMYEDAGQWEDAAKLRKLLRDRNIR 480
            GACRIHNNLELAKE+GEKLF+LDPENAGRY+ILASMYEDAGQWEDAAK+RKLLRDRNI+
Sbjct: 421 FGACRIHNNLELAKEVGEKLFILDPENAGRYMILASMYEDAGQWEDAAKVRKLLRDRNIK 480

Query: 481 KPVGCSSIEVDRINHVFGKEDENHPFTEQIFDTLEKLERIMEVDFEPI 527
           KP GCSSIEVDRI+HVFGK+DE HPFTE+IFDT+EKLER+ME DFEPI
Sbjct: 481 KPAGCSSIEVDRIHHVFGKKDETHPFTEEIFDTIEKLERLMEEDFEPI 519

[Close]

BLAST of CcUC10G186410.1 vs. TAIR 10
Match: AT3G46790.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 366.3 bits (939), Expect = 4.1e-101
Identity = 179/479 (37.37%), Postives = 292/479 (60.96%), Query Frame = 0


Query: 47  GHCRTIRSVQELHAQIIVEGQDQNEFLATKLIGKYVEHDESKMGIARKVFDRLLQRDVFA 106
           GH  ++     +H  I+  G DQ+ FLATKLIG Y   D   +  ARKVFD+  +R ++ 
Sbjct: 88  GHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMY--SDLGSVDYARKVFDKTRKRTIYV 147

Query: 107 WNVVIQGYASSGPFVEALNLFDEMRVSGAPTNRYTFPFVLKACGA----MKNIEKGKIVH 166
           WN + +    +G   E L L+ +M   G  ++R+T+ +VLKAC A    + ++ KGK +H
Sbjct: 148 WNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIH 207

Query: 167 GHVLKSGLDLDLFVGNALIAFYAKCQDVETARKVFDEMSLRDIVSWNSMISGYTLNGKVD 226
            H+ + G    +++   L+  YA+   V+ A  VF  M +R++VSW++MI+ Y  NGK  
Sbjct: 208 AHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAF 267

Query: 227 DAIMLFRAMLHDQAQAACSPDHATLVGILPACVTKSASQVGFWVHSYVIKTGMVVEAPLG 286
           +A+  FR M+ +   +  SP+  T+V +L AC + +A + G  +H Y+++ G+    P+ 
Sbjct: 268 EALRTFREMMRETKDS--SPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVI 327

Query: 287 SCLISMYGNCGHVNIARDVFDRIDNKNIIVWSAIIRCYGMHGFANEALNMFTRLEEVGLK 346
           S L++MYG CG + + + VFDR+ +++++ W+++I  YG+HG+  +A+ +F  +   G  
Sbjct: 328 SALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGAS 387

Query: 347 PDDVIFLNLLSTCSHTGLVAKGREIYEKM-EAYCVERKEEHYACMVDLLGRAGFLEQAVE 406
           P  V F+++L  CSH GLV +G+ ++E M   + ++ + EHYACMVDLLGRA  L++A +
Sbjct: 388 PTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAK 447

Query: 407 FVEGMPVQAGKDVYGALLGACRIHNNLELAKEIGEKLFVLDPENAGRYVILASMYEDAGQ 466
            V+ M  + G  V+G+LLG+CRIH N+ELA+    +LF L+P+NAG YV+LA +Y +A  
Sbjct: 448 MVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQM 507

Query: 467 WEDAAKLRKLLRDRNIRKPVGCSSIEVDRINHVFGKEDENHPFTEQIFDTLEKLERIME 521
           W++  +++KLL  R ++K  G   +EV R  + F   DE +P  EQI   L KL   M+
Sbjct: 508 WDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMK 562

[Close]

BLAST of CcUC10G186410.1 vs. TAIR 10
Match: AT5G48910.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 355.9 bits (912), Expect = 5.5e-98
Identity = 186/533 (34.90%), Postives = 299/533 (56.10%), Query Frame = 0


Query: 46  LGHCRTIRSVQELHAQIIVEGQDQNEFLATKLIGKYVEHD--ESKMGIARKVFDRLLQRD 105
           + +CRTIR + ++HA  I  GQ ++   A +++      D     +  A K+F+++ QR+
Sbjct: 30  INNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRN 89

Query: 106 VFAWNVVIQGYASS--GPFVEALNLFDEMRVSG-APTNRYTFPFVLKACGAMKNIEKGKI 165
            F+WN +I+G++ S     + A+ LF EM        NR+TFP VLKAC     I++GK 
Sbjct: 90  CFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQ 149

Query: 166 VHGHVLKSGLDLDLFVGNALIAFYAKC--------------------------------- 225
           +HG  LK G   D FV + L+  Y  C                                 
Sbjct: 150 IHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIV 209

Query: 226 ------------QDVETARKVFDEMSLRDIVSWNSMISGYTLNGKVDDAIMLFRAMLHDQ 285
                        D + AR +FD+M  R +VSWN+MISGY+LNG   DA+ +FR M    
Sbjct: 210 LWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREM---- 269

Query: 286 AQAACSPDHATLVGILPACVTKSASQVGFWVHSYVIKTGMVVEAPLGSCLISMYGNCGHV 345
            +    P++ TLV +LPA     + ++G W+H Y   +G+ ++  LGS LI MY  CG +
Sbjct: 270 KKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGII 329

Query: 346 NIARDVFDRIDNKNIIVWSAIIRCYGMHGFANEALNMFTRLEEVGLKPDDVIFLNLLSTC 405
             A  VF+R+  +N+I WSA+I  + +HG A +A++ F ++ + G++P DV ++NLL+ C
Sbjct: 330 EKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTAC 389

Query: 406 SHTGLVAKGREIYEKMEAY-CVERKEEHYACMVDLLGRAGFLEQAVEFVEGMPVQAGKDV 465
           SH GLV +GR  + +M +   +E + EHY CMVDLLGR+G L++A EF+  MP++    +
Sbjct: 390 SHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVI 449

Query: 466 YGALLGACRIHNNLELAKEIGEKLFVLDPENAGRYVILASMYEDAGQWEDAAKLRKLLRD 525
           + ALLGACR+  N+E+ K +   L  + P ++G YV L++MY   G W + +++R  +++
Sbjct: 450 WKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKE 509

Query: 526 RNIRKPVGCSSIEVDRINHVFGKEDENHPFTEQIFDTLEKL-ERIMEVDFEPI 527
           ++IRK  GCS I++D + H F  ED++HP  ++I   L ++ +++    + PI
Sbjct: 510 KDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPI 558

[Close]

BLAST of CcUC10G186410.1 vs. TAIR 10
Match: AT2G29760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 354.0 bits (907), Expect = 2.1e-97
Identity = 184/531 (34.65%), Postives = 302/531 (56.87%), Query Frame = 0


Query: 31  SSGKYHRDSYDYSKLLGHCRTIRSV---QELHAQIIVEGQDQNEFLATKLIGKYVEHDES 90
           S  + + + Y +  L+     + S+   Q LH   +      + F+A  LI  Y    + 
Sbjct: 123 SESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGD- 182

Query: 91  KMGIARKVFDRLLQRDVFAWNVVIQGYASSGPFVEALNLFDEMRVSGAPTNRYTFPFVLK 150
            +  A KVF  + ++DV +WN +I G+   G   +AL LF +M       +  T   VL 
Sbjct: 183 -LDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLS 242

Query: 151 ACGAMKNIEKGKIVHGHVLKSGLDLDLFVGNALIAFYAKC-------------------- 210
           AC  ++N+E G+ V  ++ ++ ++++L + NA++  Y KC                    
Sbjct: 243 ACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVT 302

Query: 211 -----------QDVETARKVFDEMSLRDIVSWNSMISGYTLNGKVDDAIMLFRAMLHDQA 270
                      +D E AR+V + M  +DIV+WN++IS Y  NGK ++A+++F  +   Q 
Sbjct: 303 WTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHEL---QL 362

Query: 271 QAACSPDHATLVGILPACVTKSASQVGFWVHSYVIKTGMVVEAPLGSCLISMYGNCGHVN 330
           Q     +  TLV  L AC    A ++G W+HSY+ K G+ +   + S LI MY  CG + 
Sbjct: 363 QKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLE 422

Query: 331 IARDVFDRIDNKNIIVWSAIIRCYGMHGFANEALNMFTRLEEVGLKPDDVIFLNLLSTCS 390
            +R+VF+ ++ +++ VWSA+I    MHG  NEA++MF +++E  +KP+ V F N+   CS
Sbjct: 423 KSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACS 482

Query: 391 HTGLVAKGREIYEKMEA-YCVERKEEHYACMVDLLGRAGFLEQAVEFVEGMPVQAGKDVY 450
           HTGLV +   ++ +ME+ Y +  +E+HYAC+VD+LGR+G+LE+AV+F+E MP+     V+
Sbjct: 483 HTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVW 542

Query: 451 GALLGACRIHNNLELAKEIGEKLFVLDPENAGRYVILASMYEDAGQWEDAAKLRKLLRDR 510
           GALLGAC+IH NL LA+    +L  L+P N G +V+L+++Y   G+WE+ ++LRK +R  
Sbjct: 543 GALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVT 602

Query: 511 NIRKPVGCSSIEVDRINHVFGKEDENHPFTEQIFDTL-EKLERIMEVDFEP 526
            ++K  GCSSIE+D + H F   D  HP +E+++  L E +E++    +EP
Sbjct: 603 GLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEP 648

[Close]

BLAST of CcUC10G186410.1 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 352.1 bits (902), Expect = 8.0e-97
Identity = 180/518 (34.75%), Postives = 300/518 (57.92%), Query Frame = 0


Query: 38  DSYDYSKLLGHC---RTIRSVQELHAQIIVEGQDQNEFLATKLIGKYVEH---------- 97
           +SY +  +L  C   +  +  Q++H  ++  G D + ++ T LI  YV++          
Sbjct: 133 NSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVF 192

Query: 98  DESK-------------------MGIARKVFDRLLQRDVFAWNVVIQGYASSGPFVEALN 157
           D+S                    +  A+K+FD +  +DV +WN +I GYA +G + EAL 
Sbjct: 193 DKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALE 252

Query: 158 LFDEMRVSGAPTNRYTFPFVLKACGAMKNIEKGKIVHGHVLKSGLDLDLFVGNALIAFYA 217
           LF +M  +    +  T   V+ AC    +IE G+ VH  +   G   +L + NALI  Y+
Sbjct: 253 LFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYS 312

Query: 218 KCQDVETARKVFDEMSLRDIVSWNSMISGYTLNGKVDDAIMLFRAMLHDQAQAACSPDHA 277
           KC ++ETA  +F+ +  +D++SWN++I GYT      +A++LF+ ML    ++  +P+  
Sbjct: 313 KCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEML----RSGETPNDV 372

Query: 278 TLVGILPACVTKSASQVGFWVHSYVIK--TGMVVEAPLGSCLISMYGNCGHVNIARDVFD 337
           T++ ILPAC    A  +G W+H Y+ K   G+   + L + LI MY  CG +  A  VF+
Sbjct: 373 TMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFN 432

Query: 338 RIDNKNIIVWSAIIRCYGMHGFANEALNMFTRLEEVGLKPDDVIFLNLLSTCSHTGLVAK 397
            I +K++  W+A+I  + MHG A+ + ++F+R+ ++G++PDD+ F+ LLS CSH+G++  
Sbjct: 433 SILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDL 492

Query: 398 GREIYEKM-EAYCVERKEEHYACMVDLLGRAGFLEQAVEFVEGMPVQAGKDVYGALLGAC 457
           GR I+  M + Y +  K EHY CM+DLLG +G  ++A E +  M ++    ++ +LL AC
Sbjct: 493 GRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKAC 552

Query: 458 RIHNNLELAKEIGEKLFVLDPENAGRYVILASMYEDAGQWEDAAKLRKLLRDRNIRKPVG 517
           ++H N+EL +   E L  ++PEN G YV+L+++Y  AG+W + AK R LL D+ ++K  G
Sbjct: 553 KMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPG 612

Query: 518 CSSIEVDRINHVFGKEDENHPFTEQIFDTLEKLERIME 521
           CSSIE+D + H F   D+ HP   +I+  LE++E ++E
Sbjct: 613 CSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLE 646

[Close]

BLAST of CcUC10G186410.1 vs. TAIR 10
Match: AT4G18750.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 348.2 bits (892), Expect = 1.2e-95
Identity = 168/437 (38.44%), Postives = 269/437 (61.56%), Query Frame = 0


Query: 92  ARKVFDRLLQRDVFAWNVVIQGYASSGPFVEALNLFDEMRVSGAPTNRYTFPFVLKACGA 151
           A+ VF  +  R V ++  +I GYA  G   EA+ LF+EM   G   + YT   VL  C  
Sbjct: 350 AKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCAR 409

Query: 152 MKNIEKGKIVHGHVLKSGLDLDLFVGNALIAFYAKCQDVETARKVFDEMSLRDIVSWNSM 211
            + +++GK VH  + ++ L  D+FV NAL+  YAKC  ++ A  VF EM ++DI+SWN++
Sbjct: 410 YRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTI 469

Query: 212 ISGYTLNGKVDDAIMLFRAMLHDQAQAACSPDHATLVGILPACVTKSASQVGFWVHSYVI 271
           I GY+ N   ++A+ LF  +L ++     SPD  T+  +LPAC + SA   G  +H Y++
Sbjct: 470 IGGYSKNCYANEALSLFNLLLEEK---RFSPDERTVACVLPACASLSAFDKGREIHGYIM 529

Query: 272 KTGMVVEAPLGSCLISMYGNCGHVNIARDVFDRIDNKNIIVWSAIIRCYGMHGFANEALN 331
           + G   +  + + L+ MY  CG + +A  +FD I +K+++ W+ +I  YGMHGF  EA+ 
Sbjct: 530 RNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIA 589

Query: 332 MFTRLEEVGLKPDDVIFLNLLSTCSHTGLVAKGREIYEKMEAYC-VERKEEHYACMVDLL 391
           +F ++ + G++ D++ F++LL  CSH+GLV +G   +  M   C +E   EHYAC+VD+L
Sbjct: 590 LFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDML 649

Query: 392 GRAGFLEQAVEFVEGMPVQAGKDVYGALLGACRIHNNLELAKEIGEKLFVLDPENAGRYV 451
            R G L +A  F+E MP+     ++GALL  CRIH++++LA+++ EK+F L+PEN G YV
Sbjct: 650 ARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYV 709

Query: 452 ILASMYEDAGQWEDAAKLRKLLRDRNIRKPVGCSSIEVDRINHVFGKEDENHPFTEQIFD 511
           ++A++Y +A +WE   +LRK +  R +RK  GCS IE+    ++F   D ++P TE I  
Sbjct: 710 LMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEA 769

Query: 512 TLEKLE-RIMEVDFEPI 527
            L K+  R++E  + P+
Sbjct: 770 FLRKVRARMIEEGYSPL 783

The following BLAST results are available for this feature:

BLAST of CcUC10G186410.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905146.1	6.9e-276	88.78	pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Benin...	[more]
XP_022971604.1	9.0e-268	86.69	pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucur...	[more]
KAG6596261.1	1.1e-265	85.74	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]
XP_023540099.1	2.4e-265	85.55	pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucur...	[more]
XP_022942131.1	2.4e-265	85.55	pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucur...	[more]

BLAST of CcUC10G186410.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STF3	5.8e-100	37.37	Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidop...	[more]
Q9FI80	7.8e-97	34.90	Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX...	[more]
O82380	3.0e-96	34.65	Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop...	[more]
Q9LN01	1.1e-95	34.75	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
Q9SN39	1.6e-94	38.44	Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis t...	[more]

BLAST of CcUC10G186410.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I919	4.4e-268	86.69	pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cuc...	[more]
A0A6J1FMZ9	1.2e-265	85.55	pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cuc...	[more]
A0A6J1CVV9	2.0e-260	83.08	pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Mom...	[more]
A0A0A0L101	1.7e-256	82.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002500 PE=4 SV=1	[more]
A0A5A7UCB1	5.2e-253	81.63	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of CcUC10G186410.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46790.1	4.1e-101	37.37	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G48910.1	5.5e-98	34.90	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G29760.1	2.1e-97	34.65	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G08070.1	8.0e-97	34.75	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G18750.1	1.2e-95	38.44	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 178..203 e-value: 0.015 score: 15.5 coord: 312..340 e-value: 0.0017 score: 18.4 coord: 206..232 e-value: 1.6E-7 score: 31.1 coord: 383..406 e-value: 1.3 score: 9.4 coord: 283..309 e-value: 0.58 score: 10.5
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 102..149 e-value: 9.5E-10 score: 38.5
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 312..344 e-value: 6.6E-5 score: 20.8 coord: 178..206 e-value: 1.6E-4 score: 19.6 coord: 206..232 e-value: 4.0E-6 score: 24.7 coord: 106..134 e-value: 1.9E-5 score: 22.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 103..137 score: 11.257313
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 309..343 score: 10.566751
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 204..238 score: 10.654441
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 19..154 e-value: 1.2E-15 score: 59.7 coord: 283..502 e-value: 2.4E-31 score: 111.3
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 155..263 e-value: 2.0E-20 score: 74.9
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 311..476
None	No IPR available	PANTHER	PTHR24015	OS07G0578800 PROTEIN-RELATED	coord: 29..521
None	No IPR available	PANTHER	PTHR24015:SF1933	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 29..521

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC10G186410	CcUC10G186410	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G186410.1-exon	CcUC10G186410.1-exon-CicolChr10:487910..489490	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G186410.1-cds	CcUC10G186410.1-cds-CicolChr10:487910..489490	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC10G186410.1	CcUC10G186410.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding