CcUC09G171860.1 (mRNA) Watermelon (PI 537277) v1

Overview
NameCcUC09G171860.1
TypemRNA
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr09: 8212075 .. 8216924 (+)
Sequence length237
RNA-Seq ExpressionCcUC09G171860.1
SyntenyCcUC09G171860.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGTAAAATTACAAAAGGAGGGGCAAGACCGAGGGCCCAAAAATGGTTTGTGATTTATTTATTTCATAGTTGAGAATGAACTATAAGTTCTTTAAACATCTTTCTTCACTTTATCTATAGAACACATTCTCCATACATCCTAAGTTATATAGCATGTCTTCAATGTGTCGTGGAAAAAGTACTCCATTCTTTTCCAGTCCACCCAGATTCCCTTAAAAACCCAATTAAAAGATTGGACACTACAAATAACGTAGCTGGTAGTGGTATGTATCCTGGGCATGCTAGTATATGTGTCTAACAATGACACCTACACTACAACCTACTCAAGGTAGAGTTCCATGTTTCCTAGGTTTTTAACCTTTCAAAGATCTTTTAAGACAAAATGAGGAAAAGTCAGATTAACATCATTTCAAACTACTTGGGGGAAATGATCAAACATACCTTGTCAAATTCTATGGTTAGAGCAGCTGATTTCAAGCCACAAGGAAATTTCAGGAGCATCTCCATCACCCCTGGTGAAACCTTATCTTTAGAAGGTGAAACTTGCATCTTCTCAACAACATTGGCAATTGTATGGGGTCGGTCGTCGATAAATACTTGAAGAGTATGATAATACACCTTTATATACCAAGGAACAACTTGAAAAACTCTAACAAGCAAGCTACAGCTGTCTGAGATCACAGTATCAGGCATCAACCGATCACTTGGTTTTGTAGATTTTAGCTGTAAGGCAATAGCACCCCTTTCGTTCCCACTACCCAGTAAAAACCTGGTTACGTGTAATGGTGCTTGTGGAATAGACCAAGCTACAGGAATTTTCCATGTGAATCTCAAGTCAAGTGGTTCAGAGTCATCGTACTTCTCCTCTACCATAAACATGTAAAGAACAGATAAGTGCTTGTCATCCCTGCTGCTTATCTCCATGTGTACTCTATCAGGATTAGCTGACAACTCAAAAGCAGGGTTGCTTCCAGAGCCTTCAGAACTAGCTCCTATGATTGCAAACATCTCTTGTTCCCCAAGCATGCCTTGCAGTTCTGCCATGAGACCTCTGTCAAGCTGAATGTAAACATTACTAGATCTGGCGAGAGCACATTTTCCGGTGACTCTCCTCCCAAAAATTGAGCTGAGAGACCAGCTTGGTTGTAATTGTGTTGCAGTTGAATAACCCAAAGTCCCTCTGTGACTGTGAGGCTGAAGAACCACTGTGAGTGTCTGGTCAAGTACAATGGCCAAATCCACAGCATTTGAATCATATTCAGATGACAGCAAATGCAATCTCTGAGAGTGATAAAATCCTTTGTAGATAGATGGTCGATCCATCAATACTGAAAGCCCTGATTTGTCACGACAAGGCAGGAGCTTCAACCATGGTGTCAGATTCTCTGTGCAAACAGCCTCACGAGGCAATGTACCATACCTCATATTCTCAGAAGCAGGATGAAAGCCCCATTTAGGGGCAGAATAAGAAGTTGAAGACTCCAGGAAGTTGATTGAAGCACAAAAAAGACCTGAAAGTGAATGGGTCAAATTTTTCCATGTTGCATCAACCTCATTTGGTGGAACGTCAAAAACAGCCCACAACTCAACTCCCGAAGGCTTTGCATTGCTGCTTGATATTGGATCAAATCCACCCCAACGATCATAGCGCCAACGACCTTGTGTGAAAGACAGTTCCATTTCCTTAATTCGATATTTATGAACCTGTACAAGTAATTTATACTTTAATGCTCCAACAAAGTTCATCTGACTTAACAAGAGTTGACAGGAATCCATGCATTAGTACTATTACACCCATTTGAAATATTAGTTCATAGAACCTTATTGATGTGAAGGTTGAAAATTAACTGATGGAAAGAAAGACAGAAAAAACAATCAGAGAGAGACTGAATATGGTTTTCTCATGCAAAGAGAATTAGGCAGGCAGGTTCATCAAGCTTTTCCTTCAACATGAAAGAAAAATTGTATTAATATGAATAGCTAATGCAAATTCCAAAATATTGGGGTGGGGGGGTGACACATCACCAAGGAAACCAATGTTGAGGTCAATTTTTGTAGAAAAAGTCTTTATTTGAATTATTCAACAAAGAGGTATAATTACTAGAAGGCTTATCAAGGTCATTTCATTTGAAAACATGAAAACTACAGATTCAACGCTTATTAATCTCCTTCTTAGCTCATTCAGAAAATCTTCTAGTTCTTGTTATCCACAGAAGCCAACACAAACCCGTAGCAGGATTGGAAAAACATGTTCTACCATAACCTTGGAAAAATTTGCACTCAATCATGATTGAGACTCCTCATATGCTTGGTTAATCCTATGGCACCTCAACTAAGTATTTATACAAAACTGGCATTAACTCTCTTCAGTAAGGAGATGAGGAGGGGGAGTGAATTATTCTCTAGGTGATACCAATTCAGACCAAAATGATCAATGAGCAACTACCAGCGTCGAATAAAATAGAAAATATCTGAAGGATTAAGATCTTACGACCTCCTCTTACAGGAAACTTGATCCAAAGGAGAAAAAGGGATAATACTAAGTGCACTGCCCAAATAAAGAAGTAAATTGTTTTCGGAATCTTTCTTCCCCTTTTCAAATACTGCTACACATGGACACCTTTGCATCAATTCGCACAAATATAACCCTCAACTCTCTCAATTTCTTCTTCCAGCGCTCAATGTGGGGAGATTAAAGAGCTCCCAATGCAAGGCAATTCATCCTTGTTTCTTCATAGCACTTCCCCACACAAGCACCCCCGGGTCAAGGAGACCAGAAAACGCCTTTGATTTGACCCAATTCACCGGCCATTTTAAGGTCTTATATTTATTTGGAAAAGGAAAGAATGAAAGAGTAAAGTACCAGCTGAGAAATGGCCTTGGGGAATAGGTGGTGGTGGCGGCCATAGGAGTTAGAGCGGGACGAAGGAGCTGTGCTTTGGAAGTGAAAATGCGCCAACACCTTGCGGTCAGGCAAGGGTTTAAGCAATAAGTCCTCAGAGAAGTCTTCTGCTACACCCTCAGATACCGATCCAATGGCTGAGACAGCAAATAAGATTGGCAGACAAAGCAAAGAAATCAGTCGCAGAAATGACGCCATTGCGTTCAGTACTGAATCCTGCATATGAGAAGCAAACCAGAGAAGCAAATTAACAAGAAAACAGAGAATCTTCAAGTTCTAACTTAAAATCTCAGCTTAAATAACCATCTTCATAAAATTAAATTTAAAAAAAAAAAAAAAAAAAAAAAACCTGATAGCCTCCGTTGACACTGAAGGGCGAGATGTCAGCGTTTTCATAAGAAAAATCAGAGAAATAAGGGAAAGCGCAGAGGAATTGGAAGAGAAATGAGCGGCGGAGTGAGAGAATCCGGGGGGATGATAATCAATTTCGAGCAGAGGGAAGTCCCGCTTGGATTACCAGGCGGCGGCGGAAGCAACGACTGAGAAATCCAGGCAAGCAAGAGTAGTATGGGGCTGCTTTTTGTTGAAAGTGTGGATTTGAAGTTTAATGTTGCATCTTCAATGGCATCCGGGAAGGAGGAGGCGCGACAGACAATACTGCAAAACCTCCATCGAAGCAAACTTCTCACGCTCTCTCTCAAGGTAATTAACATAAGAAATAAGAATGGGGGGGGGGGGGGGGGGGCAACGAAAAGACCATTTTAGCCCTAATTCAAAATCCAAACTTTTCGTATCTTCATTCGATGAACGTGTGACAGTGGGTGTCGTCTAAGATGTTTTATGTGTAGCTTGCTTGGCTGCCTCACAGAACTATGGGTTGTTTATCCTTCTTCTTGGCTGTGCTCTTTGTCTCTGCTTGCTTTGGTGGGGACTGTTTAAATGTTGTGTATTGGAGACATGACCCTCCTCAACTCTCTTTTCTGCATGCAATGCTCTAATCATACTCCACCATTCCTTTCCTTCTTTCTTCACTAATGGTGGTTCTGATCCTGGAGAGTTTTTGAAGCCACTTCCAGAGTTGAAGGCGTCATCACTAGTAGCCTTTGGTTCCCTTCGAATATCCCATGAATCTAGATGCACTTCGGAGATATATGTTCTAACTTGTCTTGTTTAATATAATATGGAATATGCATGCTACACATCCAATTGGTGCCTTTCATGACCACACTTCTTGTGTAGTTTTATGGTTAAAGAGCATAGAAATTGGACTTTTGTTGATGAGATATGCGGTTGTATTAAAAATCTTAGGTAGTTTTGTGTTTGCCAACCTACATTGTTTAATCATAAACTTCATATGGACATTTGCTAAACAGTTTTTTTTTTTTTTTTTTCCTCTTGCATTTCAACTTTCATCAGTCTTTAATCACATGGCCTAGTTTGTGACAGTTGAAACACTCCTTTTCCTTTCTTTTTGATTTTGATATGTGCTTTTCGGAGGTGTTCTAGTTTGTTTTAATCTCTTTATGGCTCTCTGGCTGAGAATTCAAAAGTATAACAATTTGATGTTCACCATCCAATTTTTCACCAATAATTGTAAGATGAAGCCAAATTTTGAGAAAATCATCTATATTTTGTTGTAATGTTTTAGCAGACTCCATTCTATAGCCAAAGAATCTTTCCTTCAACAAAATCTTACTCAACAGTGACTTGCTCTAATATGGAGACTAATTTCTTCCATAATTCAACAAACTTCTCGAATTCAAATTTGGTTGATATTACTAAATGATCGTTAAAAAAATTGGAGACCCTTCGAATGTTGAAATTTTAACTTACTGAAGCTTCAACAACTTGCAAATCATATCTACTTTGAGTTACTGATTAATACTACTTTTTTGTGATGAAACTCTCACTCAATTTGATGCGATTTAGGATCTATGGCTCTAA

mRNA sequence

ATGCATTTGAATAACCCAAAGTCCCTCTGTGACTGTGAGGCTGAAGAACCACTAGGGAAGTCCCGCTTGGATTACCAGGCGGCGGCGGAAGCAACGACTGAGAAATCCAGGCAAGCAAGAGTATTTAATGTTGCATCTTCAATGGCATCCGGGAAGGAGGAGGCGCGACAGACAATACTGCAAAACCTCCATCGAAGCAAACTTCTCACGCTCTCTCTCAAGGATCTATGGCTCTAA

Coding sequence (CDS)

ATGCATTTGAATAACCCAAAGTCCCTCTGTGACTGTGAGGCTGAAGAACCACTAGGGAAGTCCCGCTTGGATTACCAGGCGGCGGCGGAAGCAACGACTGAGAAATCCAGGCAAGCAAGAGTATTTAATGTTGCATCTTCAATGGCATCCGGGAAGGAGGAGGCGCGACAGACAATACTGCAAAACCTCCATCGAAGCAAACTTCTCACGCTCTCTCTCAAGGATCTATGGCTCTAA

Protein sequence

MHLNNPKSLCDCEAEEPLGKSRLDYQAAAEATTEKSRQARVFNVASSMASGKEEARQTILQNLHRSKLLTLSLKDLWL
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CcUC09G171860CcUC09G171860gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC09G171860.1-exonCcUC09G171860.1-exon-CicolChr09:8212075..8212080exon
CcUC09G171860.1-exonCcUC09G171860.1-exon-CicolChr09:8213239..8213285exon
CcUC09G171860.1-exonCcUC09G171860.1-exon-CicolChr09:8215476..8215545exon
CcUC09G171860.1-exonCcUC09G171860.1-exon-CicolChr09:8215584..8215682exon
CcUC09G171860.1-exonCcUC09G171860.1-exon-CicolChr09:8216910..8216924exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC09G171860.1-cdsCcUC09G171860.1-cds-CicolChr09:8212075..8212080CDS
CcUC09G171860.1-cdsCcUC09G171860.1-cds-CicolChr09:8213239..8213285CDS
CcUC09G171860.1-cdsCcUC09G171860.1-cds-CicolChr09:8215476..8215545CDS
CcUC09G171860.1-cdsCcUC09G171860.1-cds-CicolChr09:8215584..8215682CDS
CcUC09G171860.1-cdsCcUC09G171860.1-cds-CicolChr09:8216910..8216924CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CcUC09G171860.1CcUC09G171860.1-proteinpolypeptide