CcUC09G163310.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC09G163310.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr09: 621681 .. 622733 (-)
Sequence length	210
RNA-Seq Expression	CcUC09G163310.1
Synteny	CcUC09G163310.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGGGTGGTGAGATTAATATCTTAAAAACTCCTCACCCATTTGATGGGCAGTTAGACCCACTTCACTCCATCAATCAATGAACAAGTAGTATCAATTGATTGTTCTATTTTTGTGCTTGCTTATTACACATCTTTTTCAAAAGTTTCAACATTCTCATTTTCCTTCACAAGCATTCAAATTCCTTCTTTAACAAGCAAAATTCATTCCGTCGTAATAAAATCATACGTGATTAAACTTATGAAGTAAATTGAAGAAATTTTCGTCATATTTTATCTATTTATTTGGAGTAATTTCTAGTACCATGGGATTCTTTCTTCTTATGTTTTAGAACAAGAGGACCCAAATGATGCTACTAGTTATCATGTTTATGATAAATGTTGAATAGTCAAGTGCCAAGCGGATAACTACTGAAAGCATCTAAGTAGTAATTCCACTTTTCTAGAGCCTCTGGCAACCAAGACACTGATGGGTTCTCTGCTCCTATTGGGATGAAGCGACATAAGTTTTGAGAATTCAAGAGAAAATCATAACAAGATGAGTTGTTTACACTATGATTTTTCTTCTTTATAAACAGTTTTTTTCCCCACATTTATAAACAATTCTTTAATGTAGTTTTACTCCACATCACTTTTAAATGGTGTTAACAAAAAGAATATCCATCCCAAGCTAGTCCCTCATTATTAGTCCAATTTGGTCCTAAGTTGTCACTCTCGACCTGAATCATGCTCCCTTCTTAATTTTATCGTTTTCATTTGGGTTAGAAGTCAATTATATCTTTTGGTTCAAAATCACCCATATAAGTATCATACTCTTGTAGCACTTAAAATTTCTATTTTTTTTCTCTCTCACTAGGGAGGAGCTGTTGTAGCCACTCACTTTCATGGGCATGTTGACTTGATGGAAAGGGTATTTTGTGAGCCTCGATTGAAGTGTTTTTCATTTAAATAGGAAGTGACTTGATGACCTATTCCACGTGCCAAAGAGTCAACATTTTGCAGCTCATGCAATTCCCTCAAGTGAAGACAATTGGAAATGGCAATCCCTAA

mRNA sequence

ATGGAAATGGGTGGTGAGATTAATATCTTAAAAACTCCTCACCCATTTGATGGGCAAGCCTCTGGCAACCAAGACACTGATGGGTTCTCTGCTCCTATTGGGATGAAGCGACATAATGACTTGATGACCTATTCCACGTGCCAAAGAGTCAACATTTTGCAGCTCATGCAATTCCCTCAAGTGAAGACAATTGGAAATGGCAATCCCTAA

Coding sequence (CDS)

ATGGAAATGGGTGGTGAGATTAATATCTTAAAAACTCCTCACCCATTTGATGGGCAAGCCTCTGGCAACCAAGACACTGATGGGTTCTCTGCTCCTATTGGGATGAAGCGACATAATGACTTGATGACCTATTCCACGTGCCAAAGAGTCAACATTTTGCAGCTCATGCAATTCCCTCAAGTGAAGACAATTGGAAATGGCAATCCCTAA

Protein sequence

MEMGGEINILKTPHPFDGQASGNQDTDGFSAPIGMKRHNDLMTYSTCQRVNILQLMQFPQVKTIGNGNP

Homology

The following BLAST results are available for this feature:

BLAST of CcUC09G163310.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC09G163310.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC09G163310.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC09G163310.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC09G163310	CcUC09G163310	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC09G163310.1-exon	CcUC09G163310.1-exon-CicolChr09:621681..621774	exon
CcUC09G163310.1-exon	CcUC09G163310.1-exon-CicolChr09:622225..622284	exon
CcUC09G163310.1-exon	CcUC09G163310.1-exon-CicolChr09:622678..622733	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC09G163310.1-cds	CcUC09G163310.1-cds-CicolChr09:621681..621774	CDS
CcUC09G163310.1-cds	CcUC09G163310.1-cds-CicolChr09:622225..622284	CDS
CcUC09G163310.1-cds	CcUC09G163310.1-cds-CicolChr09:622678..622733	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC09G163310.1	CcUC09G163310.1-protein	polypeptide