CcUC08G156080.1 (mRNA) Watermelon (PI 537277) v1

Overview
NameCcUC08G156080.1
TypemRNA
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr08: 24560604 .. 24561827 (-)
Sequence length508
RNA-Seq ExpressionCcUC08G156080.1
SyntenyCcUC08G156080.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTTTTGTGGGTCATGGATCCACAATTTTCTACTATAGCAGCAGCAGCCCATTCTCATTTGAGTCAAAACCATCCAAATTTCTGTTGCTGTTTCATTTGTTTATATGACAGAAAGATTACTGAGATGAAACAAATGTCAATGAAGGAACAACCCCATTTTATTCAGTATTTTAACACATTTACTTTAGTTTTAATCAATAATTAATCAAGGTTATGGTTCTTGATATTTCTTTGCATATAGACAAATAGTGTTTTTTGAAAACATTCAAAAAAATGTTCAAAAAGGTTTATAAAGTGCCTTTGGAATAAATATACAAGTGTTTATTAAAAAGGTACATGTAAAATCCTTATTTTAAGTTCCCTTTTATTCTCTTTTGGTGCTTTTTTTTTTTAAGAGAAAAATATCGGCCAACCATATTCTATGGGGGAGGAATTCAAACTTTGGTAGGAAATGTTAAACCATTCTTTAACAAATCATGTGGTTTAAGTGAGAGAATGAACCTCTAACAGGATAACTCTGGTTTGACGTTTGAATCGTTAGTTACATATGTTGTTGAAACAAACAAACTCGAATATAAACTTTGTTCTCCAGTATGAATATAAGCTTTTAGGCTCACTTTATTTATAATTTTGGAGTTAGTGAGAGTTGGCCTAGTGGTTCAAACTCGCTACACACAATTCAAAAACTCCTAAAACCTACATCGCTCATTCACAGGTACCAAATATTTCAAAGATTAGATTCAAATGAAACCAAAAATCCATTTATTGGTGATTCATATTGCTCTTGTTCTCTGCAAATCTCTCTGCACGCCCCATCGTCTAATCCGCAATTGAAACTCTGTCGCCGCTGCTAAAAGCCTTAGTGTTTGATCAGTCCTCAGAATCTCCATAACCTGTTTCATCGTCGACCCTCGAAGCAAATCGGCGCCATTGAAAACCCTCAACATCCCAATTTTGAGCTCCTCAATCGCATTCTCCATTTCACAAACCTCTCCATCCACCAGTCTCCCTGCTCGTCGTGCCAGTCCCACAATCGGCGGTGCCGCCACCGTCTCTTGTAAGCTAGCCATTGCCTCCGTCAAATCCCTCTCCTTCCGCTTGACATTGGCCTTCAGCTCCTCCATTGACGCCGCTTGCGCAGGCGTCAAATCCTTCACCGCTCCATCCACCAAACGAAACACAATTGAGGGCTTAAACCCACAAATCCAAAGCAGAGTCCTCTCG

mRNA sequence

GCTTTTGTGGGTCATGGATCCACAATTTTCTACTATAGCAGCAGCAGCCCATTCTCATTTGAGTCAAAACCATCCAAATTTCTGTTGCTGTTTCATTTGTTTATATGACAGAAAGATTACTGAGATGAAACAAATGTCAATGAAGGAACAACCCCATTTTATTCAAATCTCCATAACCTGTTTCATCGTCGACCCTCGAAGCAAATCGGCGCCATTGAAAACCCTCAACATCCCAATTTTGAGCTCCTCAATCGCATTCTCCATTTCACAAACCTCTCCATCCACCAGTCTCCCTGCTCGTCGTGCCAGTCCCACAATCGGCGGTGCCGCCACCGTCTCTTGTAAGCTAGCCATTGCCTCCGTCAAATCCCTCTCCTTCCGCTTGACATTGGCCTTCAGCTCCTCCATTGACGCCGCTTGCGCAGGCGTCAAATCCTTCACCGCTCCATCCACCAAACGAAACACAATTGAGGGCTTAAACCCACAAATCCAAAGCAGAGTCCTCTCG

Coding sequence (CDS)

ATGGATCCACAATTTTCTACTATAGCAGCAGCAGCCCATTCTCATTTGAGTCAAAACCATCCAAATTTCTGTTGCTGTTTCATTTGTTTATATGACAGAAAGATTACTGAGATGAAACAAATGTCAATGAAGGAACAACCCCATTTTATTCAAATCTCCATAACCTGTTTCATCGTCGACCCTCGAAGCAAATCGGCGCCATTGAAAACCCTCAACATCCCAATTTTGAGCTCCTCAATCGCATTCTCCATTTCACAAACCTCTCCATCCACCAGTCTCCCTGCTCGTCGTGCCAGTCCCACAATCGGCGGTGCCGCCACCGTCTCTTGTAAGCTAGCCATTGCCTCCGTCAAATCCCTCTCCTTCCGCTTGACATTGGCCTTCAGCTCCTCCATTGACGCCGCTTGCGCAGGCGTCAAATCCTTCACCGCTCCATCCACCAAACGAAACACAATTGAGGGCTTAAACCCACAAATCCAAAGCAGAGTCCTCTCG

Protein sequence

MDPQFSTIAAAAHSHLSQNHPNFCCCFICLYDRKITEMKQMSMKEQPHFIQISITCFIVDPRSKSAPLKTLNIPILSSSIAFSISQTSPSTSLPARRASPTIGGAATVSCKLAIASVKSLSFRLTLAFSSSIDAACAGVKSFTAPSTKRNTIEGLNPQIQSRVLS
Homology
The following BLAST results are available for this feature:
BLAST of CcUC08G156080.1 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC08G156080.1 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC08G156080.1 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC08G156080.1 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CcUC08G156080CcUC08G156080gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC08G156080.1-exonCcUC08G156080.1-exon-CicolChr08:24560604..24560946exon
CcUC08G156080.1-exonCcUC08G156080.1-exon-CicolChr08:24561663..24561827exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC08G156080.1-cdsCcUC08G156080.1-cds-CicolChr08:24560604..24560946CDS
CcUC08G156080.1-cdsCcUC08G156080.1-cds-CicolChr08:24561663..24561814CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC08G156080.1-five_prime_utrCcUC08G156080.1-five_prime_utr-CicolChr08:24561815..24561827five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CcUC08G156080.1CcUC08G156080.1-proteinpolypeptide