CcUC08G155920.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC08G155920.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr08: 24377839 .. 24380189 (-)
Sequence length	180
RNA-Seq Expression	CcUC08G155920.1
Synteny	CcUC08G155920.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTCACTCTCTAAAGGCCATATTCCCATTGGTTGTCCCCAACCGAATAGAACTGAGTATTAGAGTGTGGAGGATATAATATCAGAACTTGAGACTAAGCAAACATGAAGCTAAACAAATGTTCTTCATTTCGATTCTTTTTAAGGAGAAAAAAGAACCCCACCCTCGGTCAAGAAAGAAGAAAAACCCACCAATTTTGTTGGAACTTGGGAATTCAAGATCAAGGTTAGTCTGAGTAACAAGACATCATTCATTCACAGACTAATGCACGCGTTTAATTTTTCCAGATTCACACATTTTTAAAATATAGCATAACCAAATGACATTTGAAGCCCACCTCCTCCCCCCACCCTTCACAAGCACAGGACAGGTCGAGCTTATCATGCCTTCTATGACTCATCTAACTGGTCCTGCAACAAGTCAAATATAATTCACTAATGTTATGCCCTCGTAATAAAAGGGGATAGGGGCTGCAATTTGTGCTTTCTGAGGCCTTCTTAGTTTCTATTACGTCGCTACATTTCAAAATGTTTCAAAATGTTACACTATTATATTACTCATGAGTTTTGTGTTTAGGTTTCATTTAGTATTTTGTTGTAAAATGTTACAATTTACCTTTAAGTTTGGAGGTTCTGTTTTCGTTTGGTCTCTAAGTTTTAAGATTTACATTTTTACCTTGATTTTTCACTAAATACTCACTTCAGGTCCTTGTTACTAAATTTAAAATAATTATATTAATTTCCAGTAATTTTCAATCACTGTTAAGATTAATAAAAAATGTTCCCGTCATAATTATTTGAAATAATTAACTTCTTATCCAAAAAAAATTATTTTAAATAATTAACTAAAAGCTAATGTGTCAAAGGTCAAAAGTGAGCATTAGGGAAGAATTGGAAAAAATTTTAAACATTGAAACCTTGGAAACTAAACTAAAAACTCAAATGTAAAAGTGTAAACTAAAAACTCAAATGTAAAAGTGTAACATTTTGAAACCTAGGAGCAAATAGAAATAAAACTTGAAACTCAGAGAATAAAAGAACCTACAAACCAAACACAAACTATATTAAGGAACCACTATAGTGTTCACTGACCTGAGCATCTGAAGTCCAGAGAGTGAGGTTGTCTCTCAATAGTTGCATGATGAGGGTACTGTCCTTGTATGATTCTTCACCCAAAGTGTCCAGTTCAGCAATGGCTTCCTCAAATGCCTGATCAGAAGAATAAGAAATGATGAGTAACACAAGAAATAAAGATGGGGGAAAGCATACTGCTTGTAAGTGCACCTACACTAACTTTACAGTAGTACAGTTCCAAGCATTTTTTAGCAAAAGGGGATATGGAATAAAACCAAAAGGTGTTCTCAAGAAAATGTAACATGAGCAATCGGTTTCAAAGAACAGTAAATTATTCAATGAAGCCATTACAATGTGGCTAACAATTATTCACGATTAGATGTACGAGAGAAAAATACCTCATTCGTATCTAGAAATAATTAGAGCGCATGCAGATTCTTTATGAAGCCATTACAATGTGGCTAACAATTATTCACGGTTGGATGTCCGAGAGAAAAATACCTCATTCGTATCCAGAAATAATTAGAGGGCATGCAGATTCTTTTGAATATATGGCTAACATCAGTCCAAATCAGTCGAATAATACATTTTCTCAAGACTACATGCTAATTTCGGTTAGCAATCTGTGGACACGAGGCATGCTATCGATGTCTTCTGGTTGAAATGAAATATTTGAAAAGAGGGCCCCTTTAGGCTCCTTTTGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTTAGGGGGAAAAAAAAAGAAATATATATATGAGAACAATAGACATCTATTAAAAACTCAATCAAATAACGTGGTCAACCATAAGAGGCAGATTTTTTAATCTAATCCAACGGTTACGATGAAACATCCCCATTGATCCCCCCACAACACAGTGCAGTAAGATTAGTTAATAGCAAAGTCATAGCAGGCGGTTTCAATCTATGATACAACTCTTGCAAAGGGAGATGGATCGAAACATGAATCACATTCAGTCACAGATCCAATCTTCTGTAGATGTAACCCACTTAATGACAATACTTCAATAATAAGCACGATACATTTTCATATAAAAGGAACTAAAAAACCACAGTGGTTTCAGGAAAGATGCAATAGTATTTATGACATTATGGCAATTCCTAAAAGCTGAAACTGAAGAGCAAAAGAATGACACAGAAAACAATGTAACAGTGTGA

mRNA sequence

ATGGAGGAGAAAAAAGAACCCCACCCTCGGTCAAGAAAGAAGAAAAACCCACCAATTTTGTTGGAACTTGGGAATTCAAGATCAAGGAAAGATGCAATAGTATTTATGACATTATGGCAATTCCTAAAAGCTGAAACTGAAGAGCAAAAGAATGACACAGAAAACAATGTAACAGTGTGA

Coding sequence (CDS)

ATGGAGGAGAAAAAAGAACCCCACCCTCGGTCAAGAAAGAAGAAAAACCCACCAATTTTGTTGGAACTTGGGAATTCAAGATCAAGGAAAGATGCAATAGTATTTATGACATTATGGCAATTCCTAAAAGCTGAAACTGAAGAGCAAAAGAATGACACAGAAAACAATGTAACAGTGTGA

Protein sequence

MEEKKEPHPRSRKKKNPPILLELGNSRSRKDAIVFMTLWQFLKAETEEQKNDTENNVTV

Homology

The following BLAST results are available for this feature:

BLAST of CcUC08G155920.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC08G155920.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC08G155920.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC08G155920.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC08G155920	CcUC08G155920	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC08G155920.1-exon	CcUC08G155920.1-exon-CicolChr08:24377839..24377932	exon
CcUC08G155920.1-exon	CcUC08G155920.1-exon-CicolChr08:24379961..24380040	exon
CcUC08G155920.1-exon	CcUC08G155920.1-exon-CicolChr08:24380184..24380189	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC08G155920.1-cds	CcUC08G155920.1-cds-CicolChr08:24377839..24377932	CDS
CcUC08G155920.1-cds	CcUC08G155920.1-cds-CicolChr08:24379961..24380040	CDS
CcUC08G155920.1-cds	CcUC08G155920.1-cds-CicolChr08:24380184..24380189	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC08G155920.1	CcUC08G155920.1-protein	polypeptide