CcUC08G148320.1 (mRNA) Watermelon (PI 537277) v1

Overview
NameCcUC08G148320.1
TypemRNA
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr08: 11269232 .. 11271416 (+)
Sequence length504
RNA-Seq ExpressionCcUC08G148320.1
SyntenyCcUC08G148320.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCTTTTTTTTTCTCAATTTAGGTGAGTTATTTCAATCGACATACTTTTCCTCTACTTTCTTGTTTTCACTTTTAATTATTATGGTTTCATATAATAAGGTGCTAATGGTTTGATTTTCCAGAGTTATAAAATTGAACCAGCAGCCTGTGGATTCTCCATCCATCTCATACAAGATCCAAGTTACATAGGTGCTTCATTTGCAAACTTGTCTTTTTCATACTTCATTATTCAAAATTATTTCTAACTTCTTCTCTTCTCTTTCTTGTTCAACCCAAACTGATTTGGGAGTTATGTTTGAGATTCATGTATCTGAAAGTTTCTTTCTATTTGAATTGATTACATTTGTCTACTTTCTGTGTATTACGTGGTGTATGACTTTCAATTCAAAAGTCAAGAAAGATCGAATAGTTTGAGGTACTTTATAGTTACGAGTTCAATCCAATTAGTTGATCCATTTTAGGTTACTCTATGTATATGTTATGTCGTACATCTGTTTCTTTGTAGTTTTCAGTTACTGTTTAGTTCAGACTCTATTTGTTGTTTGAATCTTGGTTTTTACTCTTTTTGGACAATACTTTTTATAGGACATTTGGTATTGGTGTTTTATATTTCCCATTATATAAACATTTGTGTTAAGATTTCATATTTTTGTGCACTATTATCTACTTTTGCAAGATTTGAGATCAATTGTATTCAAAGATTAGTTATCTTTCATAATAAACAAATGTAGTCCCCTAAATGTAAATCTAAGGACTAATGTAATACATAAAAAAAATCAAATGAATTCTCTTTTGAATTTTTTTAATAAGCATATATACATGTAAAAAAAAAGTGAACTGACTTGATTTGAAAATTTTTCCTTATTAAGTTAGGCTCTTGGGGAAAAAATATGGTTTAGAAGGTGTTGAAAATGTAGCAATGATCAAGGATGCTTCGAAAAAAATCCATAACTACCAAATACACGATGTTATATGTTGGTTTTCTCATATTCTTCTTATCATTTAAGAAAGAAATTACCAACATTTTTGCAATGAGCTTTGAAATACAATATTTTAGGACTCTTCTCAAATATAGCAAAAGGAATCAAAATATTTACAAATATAGCAAAATTTCACTGTCTATCTATGATAGAATGCAATAGATGGCGGTAGACTATTATCTGTGTCACGATAAACACAGATAGTAGTCTATCGTAGTCTATCGCAGATAGATTGTGTATTTTGCTATTAGTTATAAATATTTTCGACAGTTTTGCCATTTAAGATAATTTCCCATATTTTTATAAATATCATCTAAATACACTATTGCATCCATACAAAAGAGAGGAAACTTTTTTTTTTTTTTTTCTCAAAGAGAAGCTGGTGTTATGGTTGTTAAAATCCCCTGACATCTTAGGAAAACTAATGGCAATACCATTTTTCTAGTATTTTTCTATATTTTTTGGATTTCACGGATCTATATGTAGGACAGATAAACACAAAATTTTGAAAGGACAAAAAATATTTTATTAAAAAAGTTATAATTTTAACTACATATTAATACAAATTACATTATTTTATATCACATTCATTATTGTTATTTTTACTTATTATGACTAGTTTTTTTTTTCTTTTAAATTTAATTTCTAATATAATGGGTTCATATTATGGTTTGAACCAAACATCTTAGGGATCTCTATGCCTTTCTAACATGGATGCCAATGGTATTATAGTTTTTAGTTGTTAATATAGAGACGATATGACGATTAACTTTAATTTTCTTTTGTTTAGGGTTATGGGGAGAAGAAACTTCTATGTCATATTTGTTGGTCGTATACCAGATATATTCATGTCGTAGCATGAATGTCATAGACAAGTGAATGAATTTTGGGAAGCAATTCACCAGTTATATGAATCATTTGAGGAAGCAAAGAATGCATATTCCAAGTTTAGATTGTCAGGAAATGATCAGCATCAAACGGTTGCTCATAGTGAAATTAGATGTAACACTCATTCTACAAGTGAGACACGCGTAGGACATTTCCTACTAGGGTTTATTCTCGGAATGGTCATTATGTACCTAGGGACTAGTCTATCCGAGTCGTAGTGATACATATTGTACATGACAATGGATGTATCTACCATTGTATCTGAATTTAGGTCTTCTCGTTTTAGGAATATTTTTAAGTTGTTAATTATCCAAAG

mRNA sequence

CTTCTTTTTTTTTCTCAATTTAGAGTTATAAAATTGAACCAGCAGCCTGTGGATTCTCCATCCATCTCATACAAGATCCAAGTTACATAGGGTTATGGGGAGAAGAAACTTCTATGTCATATTTGTTGGTCGTATACCAGATATATTCATGTCGTAGCATGAATGTCATAGACAAGTGAATGAATTTTGGGAAGCAATTCACCAGTTATATGAATCATTTGAGGAAGCAAAGAATGCATATTCCAAGTTTAGATTGTCAGGAAATGATCAGCATCAAACGGTTGCTCATAGTGAAATTAGATGTAACACTCATTCTACAAGTGAGACACGCGTAGGACATTTCCTACTAGGGTTTATTCTCGGAATGGTCATTATGTACCTAGGGACTAGTCTATCCGAGTCGTAGTGATACATATTGTACATGACAATGGATGTATCTACCATTGTATCTGAATTTAGGTCTTCTCGTTTTAGGAATATTTTTAAGTTGTTAATTATCCAAAG

Coding sequence (CDS)

ATGAATTTTGGGAAGCAATTCACCAGTTATATGAATCATTTGAGGAAGCAAAGAATGCATATTCCAAGTTTAGATTGTCAGGAAATGATCAGCATCAAACGGTTGCTCATAGTGAAATTAGATGTAACACTCATTCTACAAGTGAGACACGCGTAG

Protein sequence

MNFGKQFTSYMNHLRKQRMHIPSLDCQEMISIKRLLIVKLDVTLILQVRHA
Homology
The following BLAST results are available for this feature:
BLAST of CcUC08G148320.1 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC08G148320.1 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC08G148320.1 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC08G148320.1 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CcUC08G148320CcUC08G148320gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC08G148320.1-exonCcUC08G148320.1-exon-CicolChr08:11269232..11269254exon
CcUC08G148320.1-exonCcUC08G148320.1-exon-CicolChr08:11269355..11269421exon
CcUC08G148320.1-exonCcUC08G148320.1-exon-CicolChr08:11271003..11271416exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC08G148320.1-five_prime_utrCcUC08G148320.1-five_prime_utr-CicolChr08:11269232..11269254five_prime_UTR
CcUC08G148320.1-five_prime_utrCcUC08G148320.1-five_prime_utr-CicolChr08:11269355..11269421five_prime_UTR
CcUC08G148320.1-five_prime_utrCcUC08G148320.1-five_prime_utr-CicolChr08:11271003..11271091five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC08G148320.1-cdsCcUC08G148320.1-cds-CicolChr08:11271092..11271247CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC08G148320.1-three_prime_utrCcUC08G148320.1-three_prime_utr-CicolChr08:11271248..11271416three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CcUC08G148320.1CcUC08G148320.1-proteinpolypeptide