CcUC07G136940.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC07G136940.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	elongation of fatty acids protein 3-like
Location	CicolChr07: 21714237 .. 21714434 (+)
Sequence length	198
RNA-Seq Expression	CcUC07G136940.1
Synteny	CcUC07G136940.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTCGTCCGAAATCATCTACCGACTATCGGAGCACCCCTCCATCGTCGGATTCCGTTGGAGCCACACTCATTCATGGGATTCCACTTGGTCCTTCCTCTTCTCTCCCATAGCCTTTTACCTCTCCTTCTCCACCGGCCTCCATCTCTTCCTCCACTTGCATTTCCAACCCTTCATTCCTTTTCCACGGCCTTAA

mRNA sequence

ATGATGTCGTCCGAAATCATCTACCGACTATCGGAGCACCCCTCCATCGTCGGATTCCGTTGGAGCCACACTCATTCATGGGATTCCACTTGGTCCTTCCTCTTCTCTCCCATAGCCTTTTACCTCTCCTTCTCCACCGGCCTCCATCTCTTCCTCCACTTGCATTTCCAACCCTTCATTCCTTTTCCACGGCCTTAA

Coding sequence (CDS)

ATGATGTCGTCCGAAATCATCTACCGACTATCGGAGCACCCCTCCATCGTCGGATTCCGTTGGAGCCACACTCATTCATGGGATTCCACTTGGTCCTTCCTCTTCTCTCCCATAGCCTTTTACCTCTCCTTCTCCACCGGCCTCCATCTCTTCCTCCACTTGCATTTCCAACCCTTCATTCCTTTTCCACGGCCTTAA

Protein sequence

MMSSEIIYRLSEHPSIVGFRWSHTHSWDSTWSFLFSPIAFYLSFSTGLHLFLHLHFQPFIPFPRP

Homology

[Close]

BLAST of CcUC07G136940.1 vs. NCBI nr
Match: XP_008440157.1 (PREDICTED: elongation of fatty acids protein 3-like [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 5.7e-15
Identity = 42/55 (76.36%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 4  SEIIYRLSEHPSIVGFRWSHTHSWDSTWSFLFSPIAFYLSFSTGLHLFLHLHFQP 59
          ++  Y LSEHPSIVGFRWSHTHSW STWSFLFS IAFYL+FST LHLFL L  +P
Sbjct: 9  NDFTYWLSEHPSIVGFRWSHTHSWGSTWSFLFSSIAFYLAFSTALHLFLTLLLRP 63

[Close]

BLAST of CcUC07G136940.1 vs. NCBI nr
Match: XP_038880984.1 (elongation of fatty acids protein 3-like [Benincasa hispida])

HSP 1 Score: 90.1 bits (222), Expect = 7.5e-15
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 4  SEIIYRLSEHPSIVGFRWSHTHSWDSTWSFLFSPIAFYLSFSTGLHLFLHLHFQPFIPFP 63
          ++  Y LSEHP+IVGFRWSHTHSW STWSFLFS IAFYL+FST +HLFL L  +P  P P
Sbjct: 11 NDFTYWLSEHPAIVGFRWSHTHSWGSTWSFLFSSIAFYLAFSTAVHLFLSLLLRPGRPVP 70

[Close]

BLAST of CcUC07G136940.1 vs. NCBI nr
Match: XP_022978341.1 (elongation of fatty acids protein 3-like [Cucurbita maxima])

HSP 1 Score: 89.7 bits (221), Expect = 9.8e-15
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 1  MMSSEIIYRLSEHPSIVGFRWSHTHSWDSTWSFLFSPIAFYLSFSTGLHLFLHLHFQP 59
          M+  +++Y LSEHPSIVGFRWSHTHSW STWSFLFS IAFYL+F+  +HLFL L   P
Sbjct: 1  MLIHDLVYWLSEHPSIVGFRWSHTHSWGSTWSFLFSSIAFYLAFAVAVHLFLSLLLSP 58

[Close]

BLAST of CcUC07G136940.1 vs. NCBI nr
Match: XP_022132484.1 (elongation of fatty acids protein 3-like [Momordica charantia])

HSP 1 Score: 89.7 bits (221), Expect = 9.8e-15
Identity = 44/63 (69.84%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 1  MMSSEIIYRLSEHPSIVGFRWSHTHSWDSTWSFLFSPIAFYLSFSTGLHLFLHLHFQPFI 60
          M   ++ Y LSEHPSIVGFRWSH+HSW STWSFLFS IAFYL FST LHLFL L  +P  
Sbjct: 1  MPIKDLTYWLSEHPSIVGFRWSHSHSWGSTWSFLFSSIAFYLVFSTALHLFLCLLLRPGR 60

Query: 61 PFP 64
          P P
Sbjct: 61 PVP 63

[Close]

BLAST of CcUC07G136940.1 vs. NCBI nr
Match: XP_023518252.1 (elongation of fatty acids protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.0 bits (219), Expect = 1.7e-14
Identity = 42/63 (66.67%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 1  MMSSEIIYRLSEHPSIVGFRWSHTHSWDSTWSFLFSPIAFYLSFSTGLHLFLHLHFQPFI 60
          M  +++ Y LSEHPSIVGFRWSHTHSW STWSFLFS I FYL+FS  +HLFL L  +P  
Sbjct: 6  MPITDLTYWLSEHPSIVGFRWSHTHSWGSTWSFLFSSIVFYLAFSIAIHLFLSLLLRPGR 65

Query: 61 PFP 64
          P P
Sbjct: 66 PVP 68

[Close]

BLAST of CcUC07G136940.1 vs. ExPASy Swiss-Prot
Match: Q9SYY4 (Elongation of fatty acids protein 3-like OS=Arabidopsis thaliana OX=3702 GN=HOS3 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-10
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 4  SEIIYRLSEHPSIVGFRWSHTHSWDSTWSFLFSPIAFYLSFSTGLHLFL 53
          + I Y LSEHP IVGFRWS++ SW STWSFLF+ I+ Y++ S+ LH+ L
Sbjct: 7  NSITYFLSEHPYIVGFRWSNSQSWGSTWSFLFTSISLYIAVSSSLHILL 55

[Close]

BLAST of CcUC07G136940.1 vs. ExPASy TrEMBL
Match: A0A1S3B0F3 (elongation of fatty acids protein 3-like OS=Cucumis melo OX=3656 GN=LOC103484706 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.8e-15
Identity = 42/55 (76.36%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 4  SEIIYRLSEHPSIVGFRWSHTHSWDSTWSFLFSPIAFYLSFSTGLHLFLHLHFQP 59
          ++  Y LSEHPSIVGFRWSHTHSW STWSFLFS IAFYL+FST LHLFL L  +P
Sbjct: 9  NDFTYWLSEHPSIVGFRWSHTHSWGSTWSFLFSSIAFYLAFSTALHLFLTLLLRP 63

[Close]

BLAST of CcUC07G136940.1 vs. ExPASy TrEMBL
Match: A0A6J1IMF1 (elongation of fatty acids protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111478367 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.7e-15
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 1  MMSSEIIYRLSEHPSIVGFRWSHTHSWDSTWSFLFSPIAFYLSFSTGLHLFLHLHFQP 59
          M+  +++Y LSEHPSIVGFRWSHTHSW STWSFLFS IAFYL+F+  +HLFL L   P
Sbjct: 1  MLIHDLVYWLSEHPSIVGFRWSHTHSWGSTWSFLFSSIAFYLAFAVAVHLFLSLLLSP 58

[Close]

BLAST of CcUC07G136940.1 vs. ExPASy TrEMBL
Match: A0A6J1BT67 (elongation of fatty acids protein 3-like OS=Momordica charantia OX=3673 GN=LOC111005330 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.7e-15
Identity = 44/63 (69.84%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 1  MMSSEIIYRLSEHPSIVGFRWSHTHSWDSTWSFLFSPIAFYLSFSTGLHLFLHLHFQPFI 60
          M   ++ Y LSEHPSIVGFRWSH+HSW STWSFLFS IAFYL FST LHLFL L  +P  
Sbjct: 1  MPIKDLTYWLSEHPSIVGFRWSHSHSWGSTWSFLFSSIAFYLVFSTALHLFLCLLLRPGR 60

Query: 61 PFP 64
          P P
Sbjct: 61 PVP 63

[Close]

BLAST of CcUC07G136940.1 vs. ExPASy TrEMBL
Match: A0A6J1KPE4 (elongation of fatty acids protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111497497 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.1e-15
Identity = 42/63 (66.67%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 1  MMSSEIIYRLSEHPSIVGFRWSHTHSWDSTWSFLFSPIAFYLSFSTGLHLFLHLHFQPFI 60
          M  +++ Y LSEHPSIVGFRWSHTHSW STWSFLFS I FYL+FS  +HLFL L  +P  
Sbjct: 6  MPITDLTYWLSEHPSIVGFRWSHTHSWGSTWSFLFSSIVFYLAFSIAIHLFLSLLLRPGR 65

Query: 61 PFP 64
          P P
Sbjct: 66 PVP 68

[Close]

BLAST of CcUC07G136940.1 vs. ExPASy TrEMBL
Match: A0A0A0KL12 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G487670 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 4  SEIIYRLSEHPSIVGFRWSHTHSWDSTWSFLFSPIAFYLSFSTGLHLFLHLHFQP 59
          ++  Y LSEHPSIVGFRWSHTHSW STWSFLFS IAFYL+ ST LHLFL L  +P
Sbjct: 9  NDFTYWLSEHPSIVGFRWSHTHSWGSTWSFLFSSIAFYLAISTALHLFLTLLLRP 63

[Close]

BLAST of CcUC07G136940.1 vs. TAIR 10
Match: AT4G36830.1 (GNS1/SUR4 membrane protein family )

HSP 1 Score: 66.6 bits (161), Expect = 8.3e-12
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 4  SEIIYRLSEHPSIVGFRWSHTHSWDSTWSFLFSPIAFYLSFSTGLHLFL 53
          + I Y LSEHP IVGFRWS++ SW STWSFLF+ I+ Y++ S+ LH+ L
Sbjct: 7  NSITYFLSEHPYIVGFRWSNSQSWGSTWSFLFTSISLYIAVSSSLHILL 55

[Close]

BLAST of CcUC07G136940.1 vs. TAIR 10
Match: AT1G75000.1 (GNS1/SUR4 membrane protein family )

HSP 1 Score: 55.5 bits (132), Expect = 1.9e-08
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 8  YRLSEHPSIVGFRWSHTHSWDSTWSFLFSPIAFYLSFSTGLHLFL 53
          Y L+EHP+IV FRWS T S+ STWSFLF+ ++ Y+  +  LHL L
Sbjct: 6  YYLAEHPTIVNFRWSPTQSYASTWSFLFTAVSSYIIAAVTLHLLL 50

The following BLAST results are available for this feature:

BLAST of CcUC07G136940.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008440157.1	5.7e-15	76.36	PREDICTED: elongation of fatty acids protein 3-like [Cucumis melo]	[more]
XP_038880984.1	7.5e-15	70.00	elongation of fatty acids protein 3-like [Benincasa hispida]	[more]
XP_022978341.1	9.8e-15	68.97	elongation of fatty acids protein 3-like [Cucurbita maxima]	[more]
XP_022132484.1	9.8e-15	69.84	elongation of fatty acids protein 3-like [Momordica charantia]	[more]
XP_023518252.1	1.7e-14	66.67	elongation of fatty acids protein 3-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CcUC07G136940.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYY4	1.2e-10	59.18	Elongation of fatty acids protein 3-like OS=Arabidopsis thaliana OX=3702 GN=HOS3...	[more]

BLAST of CcUC07G136940.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B0F3	2.8e-15	76.36	elongation of fatty acids protein 3-like OS=Cucumis melo OX=3656 GN=LOC103484706...	[more]
A0A6J1IMF1	4.7e-15	68.97	elongation of fatty acids protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A6J1BT67	4.7e-15	69.84	elongation of fatty acids protein 3-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1KPE4	8.1e-15	66.67	elongation of fatty acids protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A0A0KL12	1.4e-14	74.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G487670 PE=4 SV=1	[more]

BLAST of CcUC07G136940.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G36830.1	8.3e-12	59.18	GNS1/SUR4 membrane protein family	[more]
AT1G75000.1	1.9e-08	55.56	GNS1/SUR4 membrane protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002076	ELO family	PANTHER	PTHR11157	FATTY ACID ACYL TRANSFERASE-RELATED	coord: 2..53
None	No IPR available	PANTHER	PTHR11157:SF11	ELONGATION OF FATTY ACIDS PROTEIN 3-LIKE	coord: 2..53

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC07G136940	CcUC07G136940	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC07G136940.1-exon	CcUC07G136940.1-exon-CicolChr07:21714237..21714434	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC07G136940.1-cds	CcUC07G136940.1-cds-CicolChr07:21714237..21714434	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC07G136940.1	CcUC07G136940.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006633	fatty acid biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0009922	fatty acid elongase activity