CcUC06G118810.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC06G118810.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	40S ribosomal protein S24
Location	CicolChr06: 14211238 .. 14213695 (+)
Sequence length	920
RNA-Seq Expression	CcUC06G118810.1
Synteny	CcUC06G118810.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACAATGGCAACACTTCCTAGGGTTTCATCACTATAACTCAAGGTTTCATCACTGTCTTATTCTCTCCTCTTTGCCGAGCCTTCGTCTTGCTGCTCTCAGCTACGCTTCGCTTCACTTCATCCATTCGTCACCGACAATGGCGGACAAGGCAGTCACCATACGAACGAGAAAGTTCATGACCAACCGGCTTCTCTCCAGGAAGCAATTTGTGAGTTTCCTTCTTTTCTTTTCTACGTTTTATCAATAACGAAAGATTGGTTTTGAACTTTGAAGTCTCCCTCGGATTAGTTTCGTTAAGGAGAAATCCAGTATTTGAACCTCATATCTCTATTACGCGTTTCCTTTGTTTTATAAATTGGTTTGAAGTATAAGATTCAACAACCCATATTCAAATTAATGCAATCCTGTTGTATAAGTTTCTTTTAAATGATTCCCATTTGACCCCAGTTTTCATATGCAGCCCAATCTAATTCTATAGTTTGATATTCGTTCTCTTTGTCGACATTTATCCCATTCATATCTGCTAAGCTTCTGTTATAACTAGCTGACAATTGTTTATATGCTCTGTGATTTTGTGTTTTGTCTTTGAATCTTCACAATGTACAAGTCTTGTGTGAATGGTGGCTGCCTATCTGTGATTTCATATCCTATGAGATTCCTTTCGCGACCAGAAATTTAGTAGGGTTAGACCGGACACCCGCAGATGTTAAAAGCATGTTTTATGAACATGCTACGCTTTTCTTTTGTGCTTAGATGAACTGTACTGGTGTTCGTGTCCTTTTGCGCTCTACTGGCTTGGGAGTTCTACTCTTAAAACCACAACACCATGACAATGGAGTCCAATACTTCCAATTTTTAGGCTTTAGTTCTTACTGTTCCTTTTCTGGATTGATGCAGATCATTGATGTTCTACACCCAGGAAGACCAAATGTCTCTAAGGTAAGTCGATTTTAGTTATGGAAGTGATTGTGCTTCTGCTTTAGAATAATGCTTTCATAATGAATGAATCCTGCAGTGTCTTACGGCCAATTTATCACATTTCATATTTAGAATTTATGCTTTCTACGGATAGATTTTGAGTTTAATGGTTTTGAGTTTCAAGTCTGGTTGCATGTTAAATTATCTGCTCATTTGATTTCACTTTTGTCTTTTTGATTTGAAGGCAGAGCTGAAGGAAAAGTTAGCAAGAATATATGATGTGAAGGACGCGAATGCAATTTTTGTCTTTAAGTTTCGAACTCACTTTGGAGGTGGAAAATCAACTGGGTTTGGTTTGATTTATGATTCTGTTGAAAATGCCAAAAAATATGAGCCCAAGTACAGGCTCATCAGGGTAATTTCTTTTCCTTGTTATTTACACCGCCTTTTCCCTTTTGTTCCGTTGCAGACTTTTACCTGCACACATTATATTGGATGAAATATTCTAGTCAGTACTGTTAACTAATGGATTCAATATTACTAGTTTAAAAAGTATGGACACTGCTTTGAGCACTGTGTGTTGAACATGCGTGGTGTACACATGTTGAGTTCTGATTTGGCAGGGGACAAAGAAATGCAGGTGTGGGGGGTTGGGGGGGAATATTAGGATGCAATTGGTTCATATGGAGGACTTGCGTAGAGAATGAAGTAACAAGACAAAAATTGATAATTCTTTTATGAATGGAGGAATATTGCATCATTTTATTTGGAGAAGAAAAAAGATGAAACCCTATTGAAACTAAGCAAAACGGGGGGTAGGGGTGGACTTTTCGGTTTCACTTGAATGTATCATAAGGAGTGATGTGGGAAAATATAATGTTTGAGATGCAGGTTTCTTTGTTTGAAATATTTGAGGGATACTTGACTTCAATTTGCCGTCAAAGACGTTTAGTCTTTATAAGAGTCATATTTGATAAAAGGCCATGAATAATTATATCTTTACAATTATGGTTCACTATTTTCAAAATAGTTTTTCTGTCTGGATGCAAAAGAGTTGGGTTATTTCTGAAATCAAGTGTTATTTTCTTTACAGAATGGACTTGACACTAAAGTAGAAAAATCAAGGAAGCAAATGAAGGAGAGGAAGAACAGAGCCAAGAAGATTCGTGGAGTAAAGAAAGTGAGTAAACCCTTCTTTTTATTGTTTGAGTTTCTAAATTTGAAAATAGCAGTGTTTAATATTAGCTGCAACTTCCCCTTTCGTTTTACCAGACAAAGGCCTCAGACGCTGCCAAGGCTGGAAAGAAGAAATGAGTTTTTACTGCTGTGTTTTCGTGCCTTGGCCTTTTTCTCTCTATCATGTCTGTATTTCATCCCTCTAAAGTTTAGTTCTTAAGTGGCGTTTGGCACTGCCAGTGAAATGAATGTCTGGAGAATTATTGACACCAATGTTTTAGCCATTAATTGCAAATTTGGGAGTGTTTTTTTCTAGGGAACAATTTTGACATTAGTGACCATATATTTTATAGTGATCAAAG

mRNA sequence

CAACAATGGCAACACTTCCTAGGGTTTCATCACTATAACTCAAGGTTTCATCACTGTCTTATTCTCTCCTCTTTGCCGAGCCTTCGTCTTGCTGCTCTCAGCTACGCTTCGCTTCACTTCATCCATTCGTCACCGACAATGGCGGACAAGGCAGTCACCATACGAACGAGAAAGTTCATGACCAACCGGCTTCTCTCCAGGAAGCAATTTATGAACTGTACTGGTGTTCGTGTCCTTTTGCGCTCTACTGGCTTGGGAGTTCTACTCTTAAAACCACAACACCATGACAATGGAGTCCAATACTTCCAATTTTTAGGCTTTAGTTCTTACTGTTCCTTTTCTGGATTGATGCAGATCATTGATGTTCTACACCCAGGAAGACCAAATGTCTCTAAGGCAGAGCTGAAGGAAAAGTTAGCAAGAATATATGATGTGAAGGACGCGAATGCAATTTTTGTCTTTAAGTTTCGAACTCACTTTGGAGGTGGAAAATCAACTGGGTTTGGTTTGATTTATGATTCTGTTGAAAATGCCAAAAAATATGAGCCCAAGTACAGGCTCATCAGGAATGGACTTGACACTAAAGTAGAAAAATCAAGGAAGCAAATGAAGGAGAGGAAGAACAGAGCCAAGAAGATTCGTGGAGTAAAGAAAACAAAGGCCTCAGACGCTGCCAAGGCTGGAAAGAAGAAATGAGTTTTTACTGCTGTGTTTTCGTGCCTTGGCCTTTTTCTCTCTATCATGTCTGTATTTCATCCCTCTAAAGTTTAGTTCTTAAGTGGCGTTTGGCACTGCCAGTGAAATGAATGTCTGGAGAATTATTGACACCAATGTTTTAGCCATTAATTGCAAATTTGGGAGTGTTTTTTTCTAGGGAACAATTTTGACATTAGTGACCATATATTTTATAGTGATCAAAG

Coding sequence (CDS)

CAACAATGGCAACACTTCCTAGGGTTTCATCACTATAACTCAAGGTTTCATCACTGTCTTATTCTCTCCTCTTTGCCGAGCCTTCGTCTTGCTGCTCTCAGCTACGCTTCGCTTCACTTCATCCATTCGTCACCGACAATGGCGGACAAGGCAGTCACCATACGAACGAGAAAGTTCATGACCAACCGGCTTCTCTCCAGGAAGCAATTTATGAACTGTACTGGTGTTCGTGTCCTTTTGCGCTCTACTGGCTTGGGAGTTCTACTCTTAAAACCACAACACCATGACAATGGAGTCCAATACTTCCAATTTTTAGGCTTTAGTTCTTACTGTTCCTTTTCTGGATTGATGCAGATCATTGATGTTCTACACCCAGGAAGACCAAATGTCTCTAAGGCAGAGCTGAAGGAAAAGTTAGCAAGAATATATGATGTGAAGGACGCGAATGCAATTTTTGTCTTTAAGTTTCGAACTCACTTTGGAGGTGGAAAATCAACTGGGTTTGGTTTGATTTATGATTCTGTTGAAAATGCCAAAAAATATGAGCCCAAGTACAGGCTCATCAGGAATGGACTTGACACTAAAGTAGAAAAATCAAGGAAGCAAATGAAGGAGAGGAAGAACAGAGCCAAGAAGATTCGTGGAGTAAAGAAAACAAAGGCCTCAGACGCTGCCAAGGCTGGAAAGAAGAAATGA

Protein sequence

QQWQHFLGFHHYNSRFHHCLILSSLPSLRLAALSYASLHFIHSSPTMADKAVTIRTRKFMTNRLLSRKQFMNCTGVRVLLRSTGLGVLLLKPQHHDNGVQYFQFLGFSSYCSFSGLMQIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

Homology

[Close]

BLAST of CcUC06G118810.1 vs. NCBI nr
Match: KAG6588329.1 (40S ribosomal protein S24-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 250.8 bits (639), Expect = 1.2e-62
Identity = 147/204 (72.06%), Postives = 150/204 (73.53%), Query Frame = 0


Query: 30  LAALSYASLHFI--HSSPTMADKAVTIRTRKFMTNRLLSRKQFMNCTGVRVLLRSTGLGV 89
           L  L +ASLHF   +SSPTMADKAVTIRTRKFMTNRLLSRKQF                 
Sbjct: 17  LVLLRFASLHFTSSYSSPTMADKAVTIRTRKFMTNRLLSRKQF----------------- 76

Query: 90  LLLKPQHHDNGVQYFQFLGFSSYCSFSGLMQIIDVLHPGRPNVSKAELKEKLARIYDVKD 149
                                          +IDVLHPGRPNVSKAELKEKLARIYDVKD
Sbjct: 77  -------------------------------VIDVLHPGRPNVSKAELKEKLARIYDVKD 136

Query: 150 ANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERK 209
           ANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERK
Sbjct: 137 ANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERK 172

Query: 210 NRAKKIRGVKKTKASDAAKAGKKK 232
           NRAKKIRGVKKTKASDAAKAGKKK
Sbjct: 197 NRAKKIRGVKKTKASDAAKAGKKK 172

[Close]

BLAST of CcUC06G118810.1 vs. NCBI nr
Match: KAA8536959.1 (hypothetical protein F0562_029437 [Nyssa sinensis])

HSP 1 Score: 237.3 bits (604), Expect = 1.3e-58
Identity = 138/185 (74.59%), Postives = 144/185 (77.84%), Query Frame = 0


Query: 47  MADKAVTIRTRKFMTNRLLSRKQFMNCTGVRVLLRSTGLGVLLLKPQHHDNGVQYFQFLG 106
           MADKAVTIRTRKFMTNRLLSRKQF+       L+ S  L  LL                 
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIFWATEWSLMVSYLLQSLL----------------- 60

Query: 107 FSSYCSFSGLMQIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKST 166
                     +QIIDVLHPGRPNVSKAELKEKLAR+Y+VKD NAIFVFKFRTHFGGGKST
Sbjct: 61  ---------CIQIIDVLHPGRPNVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKST 120

Query: 167 GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK 226
           GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQ+KERKNRAKKIRGVKKTKA DAAK
Sbjct: 121 GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTKAGDAAK 159

Query: 227 AGKKK 232
           AGKKK
Sbjct: 181 AGKKK 159

[Close]

BLAST of CcUC06G118810.1 vs. NCBI nr
Match: XP_008462725.1 (PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >XP_038878465.1 40S ribosomal protein S24-1-like [Benincasa hispida] >KAA0062600.1 40S ribosomal protein S24-1 [Cucumis melo var. makuwa] >TYK29716.1 40S ribosomal protein S24-1 [Cucumis melo var. makuwa])

HSP 1 Score: 235.7 bits (600), Expect = 3.9e-58
Identity = 137/185 (74.05%), Postives = 137/185 (74.05%), Query Frame = 0


Query: 47  MADKAVTIRTRKFMTNRLLSRKQFMNCTGVRVLLRSTGLGVLLLKPQHHDNGVQYFQFLG 106
           MADKAVTIRTRKFMTNRLLSRKQF                                    
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQF------------------------------------ 60

Query: 107 FSSYCSFSGLMQIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKST 166
                       IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKST
Sbjct: 61  ------------IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKST 120

Query: 167 GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK 226
           GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
Sbjct: 121 GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK 137

Query: 227 AGKKK 232
           AGKKK
Sbjct: 181 AGKKK 137

[Close]

BLAST of CcUC06G118810.1 vs. NCBI nr
Match: XP_022933090.1 (40S ribosomal protein S24-1-like [Cucurbita moschata] >XP_022972142.1 40S ribosomal protein S24-1-like [Cucurbita maxima] >XP_023529307.1 40S ribosomal protein S24-1-like [Cucurbita pepo subsp. pepo] >KAG7020892.1 40S ribosomal protein S24-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 235.3 bits (599), Expect = 5.1e-58
Identity = 136/185 (73.51%), Postives = 137/185 (74.05%), Query Frame = 0


Query: 47  MADKAVTIRTRKFMTNRLLSRKQFMNCTGVRVLLRSTGLGVLLLKPQHHDNGVQYFQFLG 106
           MADKAVTIRTRKFMTNRLLSRKQF                                    
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQF------------------------------------ 60

Query: 107 FSSYCSFSGLMQIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKST 166
                       +IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKST
Sbjct: 61  ------------VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKST 120

Query: 167 GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK 226
           GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
Sbjct: 121 GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK 137

Query: 227 AGKKK 232
           AGKKK
Sbjct: 181 AGKKK 137

[Close]

BLAST of CcUC06G118810.1 vs. NCBI nr
Match: XP_008455742.1 (PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >XP_038889626.1 40S ribosomal protein S24-1 [Benincasa hispida] >ADN33912.1 40S ribosomal protein s24 [Cucumis melo subsp. melo] >KAA0063627.1 40S ribosomal protein S24-1 [Cucumis melo var. makuwa] >TYK18399.1 40S ribosomal protein S24-1 [Cucumis melo var. makuwa])

HSP 1 Score: 233.8 bits (595), Expect = 1.5e-57
Identity = 136/185 (73.51%), Postives = 136/185 (73.51%), Query Frame = 0


Query: 47  MADKAVTIRTRKFMTNRLLSRKQFMNCTGVRVLLRSTGLGVLLLKPQHHDNGVQYFQFLG 106
           MADKAVTIRTRKFMTNRLLSRKQF                                    
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQF------------------------------------ 60

Query: 107 FSSYCSFSGLMQIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKST 166
                       IIDVLHPGRPNVSKAELKEKLARIYDVKD NAIFVFKFRTHFGGGKST
Sbjct: 61  ------------IIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKST 120

Query: 167 GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK 226
           GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
Sbjct: 121 GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK 137

Query: 227 AGKKK 232
           AGKKK
Sbjct: 181 AGKKK 137

[Close]

BLAST of CcUC06G118810.1 vs. ExPASy Swiss-Prot
Match: Q9SS17 (40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.5e-52
Identity = 118/180 (65.56%), Postives = 128/180 (71.11%), Query Frame = 0


Query: 47  MADKAVTIRTRKFMTNRLLSRKQFMNCTGVRVLLRSTGLGVLLLKPQHHDNGVQYFQFLG 106
           MA+KAVTIRTRKFMTNRLLSRKQF                                    
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQF------------------------------------ 60

Query: 107 FSSYCSFSGLMQIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKST 166
                       +IDVLHPGR NVSKAELKEKLAR+Y+VKD NAIFVFKFRTHFGGGKS+
Sbjct: 61  ------------VIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSS 120

Query: 167 GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK 226
           GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGVKKTKA DA K
Sbjct: 121 GFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGVKKTKAGDAKK 132

[Close]

BLAST of CcUC06G118810.1 vs. ExPASy Swiss-Prot
Match: Q8LC83 (40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2)

HSP 1 Score: 201.8 bits (512), Expect = 8.2e-51
Identity = 114/180 (63.33%), Postives = 125/180 (69.44%), Query Frame = 0


Query: 47  MADKAVTIRTRKFMTNRLLSRKQFMNCTGVRVLLRSTGLGVLLLKPQHHDNGVQYFQFLG 106
           MA+KAVTIRTR FMTNRLL+RKQF                                    
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQF------------------------------------ 60

Query: 107 FSSYCSFSGLMQIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKST 166
                       +IDVLHPGR NVSKAELKEKLAR+Y+VKD NAIF FKFRTHFGGGKS+
Sbjct: 61  ------------VIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHFGGGKSS 120

Query: 167 GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK 226
           G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGVKKTKA D  K
Sbjct: 121 GYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGVKKTKAGDTKK 132

[Close]

BLAST of CcUC06G118810.1 vs. ExPASy Swiss-Prot
Match: Q962Q6 (40S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.3e-31
Identity = 83/180 (46.11%), Postives = 104/180 (57.78%), Query Frame = 0


Query: 47  MADKAVTIRTRKFMTNRLLSRKQFMNCTGVRVLLRSTGLGVLLLKPQHHDNGVQYFQFLG 106
           M +   TIRTRKFMTNRLL+RKQ                                     
Sbjct: 1   MTEGTATIRTRKFMTNRLLARKQ------------------------------------- 60

Query: 107 FSSYCSFSGLMQIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKST 166
                       + DVLHPG+P VSK E++EKLA++Y V   + +FVF F+T+FGGGKST
Sbjct: 61  -----------MVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNFGGGKST 120

Query: 167 GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK 226
           GF LIYD+++ AKK+EPK+RL R+GL  K   +RKQ KERKNR KK+RG KK+K   AAK
Sbjct: 121 GFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGAAAK 131

[Close]

BLAST of CcUC06G118810.1 vs. ExPASy Swiss-Prot
Match: Q56JU9 (40S ribosomal protein S24 OS=Bos taurus OX=9913 GN=RPS24 PE=2 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 2.3e-29
Identity = 85/180 (47.22%), Postives = 100/180 (55.56%), Query Frame = 0


Query: 52  VTIRTRKFMTNRLLSRKQFMNCTGVRVLLRSTGLGVLLLKPQHHDNGVQYFQFLGFSSYC 111
           VTIRTRKFMTNRLL RKQ                                          
Sbjct: 5   VTIRTRKFMTNRLLQRKQ------------------------------------------ 64

Query: 112 SFSGLMQIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLI 171
                  +IDVLHPG+  V K E++EKLA++Y     + IFVF FRTHFGGGK+TGFG+I
Sbjct: 65  ------MVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTHFGGGKTTGFGMI 124

Query: 172 YDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK 231
           YDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K        AGKKK
Sbjct: 125 YDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKANVG----AGKKK 131

[Close]

BLAST of CcUC06G118810.1 vs. ExPASy Swiss-Prot
Match: Q5RAQ8 (40S ribosomal protein S24 OS=Pongo abelii OX=9601 GN=RPS24 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.3e-29
Identity = 85/180 (47.22%), Postives = 100/180 (55.56%), Query Frame = 0


Query: 52  VTIRTRKFMTNRLLSRKQFMNCTGVRVLLRSTGLGVLLLKPQHHDNGVQYFQFLGFSSYC 111
           VTIRTRKFMTNRLL RKQ                                          
Sbjct: 5   VTIRTRKFMTNRLLQRKQ------------------------------------------ 64

Query: 112 SFSGLMQIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLI 171
                  +IDVLHPG+  V K E++EKLA++Y     + IFVF FRTHFGGGK+TGFG+I
Sbjct: 65  ------MVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTHFGGGKTTGFGMI 124

Query: 172 YDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK 231
           YDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K        AGKKK
Sbjct: 125 YDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKANVG----AGKKK 131

[Close]

BLAST of CcUC06G118810.1 vs. ExPASy TrEMBL
Match: A0A5J5B2R1 (40S ribosomal protein S24 OS=Nyssa sinensis OX=561372 GN=F0562_029437 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 6.5e-59
Identity = 138/185 (74.59%), Postives = 144/185 (77.84%), Query Frame = 0


Query: 47  MADKAVTIRTRKFMTNRLLSRKQFMNCTGVRVLLRSTGLGVLLLKPQHHDNGVQYFQFLG 106
           MADKAVTIRTRKFMTNRLLSRKQF+       L+ S  L  LL                 
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIFWATEWSLMVSYLLQSLL----------------- 60

Query: 107 FSSYCSFSGLMQIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKST 166
                     +QIIDVLHPGRPNVSKAELKEKLAR+Y+VKD NAIFVFKFRTHFGGGKST
Sbjct: 61  ---------CIQIIDVLHPGRPNVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKST 120

Query: 167 GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK 226
           GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQ+KERKNRAKKIRGVKKTKA DAAK
Sbjct: 121 GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTKAGDAAK 159

Query: 227 AGKKK 232
           AGKKK
Sbjct: 181 AGKKK 159

[Close]

BLAST of CcUC06G118810.1 vs. ExPASy TrEMBL
Match: A0A5D3E1B6 (40S ribosomal protein S24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3607G00280 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.9e-58
Identity = 137/185 (74.05%), Postives = 137/185 (74.05%), Query Frame = 0


Query: 47  MADKAVTIRTRKFMTNRLLSRKQFMNCTGVRVLLRSTGLGVLLLKPQHHDNGVQYFQFLG 106
           MADKAVTIRTRKFMTNRLLSRKQF                                    
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQF------------------------------------ 60

Query: 107 FSSYCSFSGLMQIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKST 166
                       IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKST
Sbjct: 61  ------------IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKST 120

Query: 167 GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK 226
           GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
Sbjct: 121 GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK 137

Query: 227 AGKKK 232
           AGKKK
Sbjct: 181 AGKKK 137

[Close]

BLAST of CcUC06G118810.1 vs. ExPASy TrEMBL
Match: A0A1S3CHL4 (40S ribosomal protein S24 OS=Cucumis melo OX=3656 GN=LOC103501023 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.9e-58
Identity = 137/185 (74.05%), Postives = 137/185 (74.05%), Query Frame = 0


Query: 47  MADKAVTIRTRKFMTNRLLSRKQFMNCTGVRVLLRSTGLGVLLLKPQHHDNGVQYFQFLG 106
           MADKAVTIRTRKFMTNRLLSRKQF                                    
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQF------------------------------------ 60

Query: 107 FSSYCSFSGLMQIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKST 166
                       IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKST
Sbjct: 61  ------------IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKST 120

Query: 167 GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK 226
           GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
Sbjct: 121 GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK 137

Query: 227 AGKKK 232
           AGKKK
Sbjct: 181 AGKKK 137

[Close]

BLAST of CcUC06G118810.1 vs. ExPASy TrEMBL
Match: A0A6J1I401 (40S ribosomal protein S24 OS=Cucurbita maxima OX=3661 GN=LOC111470770 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 2.5e-58
Identity = 136/185 (73.51%), Postives = 137/185 (74.05%), Query Frame = 0


Query: 47  MADKAVTIRTRKFMTNRLLSRKQFMNCTGVRVLLRSTGLGVLLLKPQHHDNGVQYFQFLG 106
           MADKAVTIRTRKFMTNRLLSRKQF                                    
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQF------------------------------------ 60

Query: 107 FSSYCSFSGLMQIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKST 166
                       +IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKST
Sbjct: 61  ------------VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKST 120

Query: 167 GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK 226
           GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
Sbjct: 121 GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK 137

Query: 227 AGKKK 232
           AGKKK
Sbjct: 181 AGKKK 137

[Close]

BLAST of CcUC06G118810.1 vs. ExPASy TrEMBL
Match: A0A6J1F3Y6 (40S ribosomal protein S24 OS=Cucurbita moschata OX=3662 GN=LOC111439823 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 2.5e-58
Identity = 136/185 (73.51%), Postives = 137/185 (74.05%), Query Frame = 0


Query: 47  MADKAVTIRTRKFMTNRLLSRKQFMNCTGVRVLLRSTGLGVLLLKPQHHDNGVQYFQFLG 106
           MADKAVTIRTRKFMTNRLLSRKQF                                    
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQF------------------------------------ 60

Query: 107 FSSYCSFSGLMQIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKST 166
                       +IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKST
Sbjct: 61  ------------VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKST 120

Query: 167 GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK 226
           GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
Sbjct: 121 GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK 137

Query: 227 AGKKK 232
           AGKKK
Sbjct: 181 AGKKK 137

[Close]

BLAST of CcUC06G118810.1 vs. TAIR 10
Match: AT3G04920.1 (Ribosomal protein S24e family protein )

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-53
Identity = 118/180 (65.56%), Postives = 128/180 (71.11%), Query Frame = 0


Query: 47  MADKAVTIRTRKFMTNRLLSRKQFMNCTGVRVLLRSTGLGVLLLKPQHHDNGVQYFQFLG 106
           MA+KAVTIRTRKFMTNRLLSRKQF                                    
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQF------------------------------------ 60

Query: 107 FSSYCSFSGLMQIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKST 166
                       +IDVLHPGR NVSKAELKEKLAR+Y+VKD NAIFVFKFRTHFGGGKS+
Sbjct: 61  ------------VIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSS 120

Query: 167 GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK 226
           GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGVKKTKA DA K
Sbjct: 121 GFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGVKKTKAGDAKK 132

[Close]

BLAST of CcUC06G118810.1 vs. TAIR 10
Match: AT5G28060.1 (Ribosomal protein S24e family protein )

HSP 1 Score: 201.8 bits (512), Expect = 5.9e-52
Identity = 114/180 (63.33%), Postives = 125/180 (69.44%), Query Frame = 0


Query: 47  MADKAVTIRTRKFMTNRLLSRKQFMNCTGVRVLLRSTGLGVLLLKPQHHDNGVQYFQFLG 106
           MA+KAVTIRTR FMTNRLL+RKQF                                    
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQF------------------------------------ 60

Query: 107 FSSYCSFSGLMQIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKST 166
                       +IDVLHPGR NVSKAELKEKLAR+Y+VKD NAIF FKFRTHFGGGKS+
Sbjct: 61  ------------VIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHFGGGKSS 120

Query: 167 GFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK 226
           G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGVKKTKA D  K
Sbjct: 121 GYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGVKKTKAGDTKK 132

The following BLAST results are available for this feature:

BLAST of CcUC06G118810.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588329.1	1.2e-62	72.06	40S ribosomal protein S24-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAA8536959.1	1.3e-58	74.59	hypothetical protein F0562_029437 [Nyssa sinensis]	[more]
XP_008462725.1	3.9e-58	74.05	PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >XP_038878465.1 40S riboso...	[more]
XP_022933090.1	5.1e-58	73.51	40S ribosomal protein S24-1-like [Cucurbita moschata] >XP_022972142.1 40S riboso...	[more]
XP_008455742.1	1.5e-57	73.51	PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >XP_038889626.1 40S riboso...	[more]

BLAST of CcUC06G118810.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SS17	1.5e-52	65.56	40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1	[more]
Q8LC83	8.2e-51	63.33	40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2	[more]
Q962Q6	3.3e-31	46.11	40S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1	[more]
Q56JU9	2.3e-29	47.22	40S ribosomal protein S24 OS=Bos taurus OX=9913 GN=RPS24 PE=2 SV=2	[more]
Q5RAQ8	2.3e-29	47.22	40S ribosomal protein S24 OS=Pongo abelii OX=9601 GN=RPS24 PE=2 SV=1	[more]

BLAST of CcUC06G118810.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5J5B2R1	6.5e-59	74.59	40S ribosomal protein S24 OS=Nyssa sinensis OX=561372 GN=F0562_029437 PE=3 SV=1	[more]
A0A5D3E1B6	1.9e-58	74.05	40S ribosomal protein S24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CHL4	1.9e-58	74.05	40S ribosomal protein S24 OS=Cucumis melo OX=3656 GN=LOC103501023 PE=3 SV=1	[more]
A0A6J1I401	2.5e-58	73.51	40S ribosomal protein S24 OS=Cucurbita maxima OX=3661 GN=LOC111470770 PE=3 SV=1	[more]
A0A6J1F3Y6	2.5e-58	73.51	40S ribosomal protein S24 OS=Cucurbita moschata OX=3662 GN=LOC111439823 PE=3 SV=...	[more]

BLAST of CcUC06G118810.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04920.1	1.1e-53	65.56	Ribosomal protein S24e family protein	[more]
AT5G28060.1	5.9e-52	63.33	Ribosomal protein S24e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001976	Ribosomal protein S24e	PFAM	PF01282	Ribosomal_S24e	coord: 120..197 e-value: 7.0E-35 score: 118.8
IPR001976	Ribosomal protein S24e	PANTHER	PTHR10496	40S RIBOSOMAL PROTEIN S24	coord: 118..231 coord: 47..71
IPR001976	Ribosomal protein S24e	HAMAP	MF_00545	Ribosomal_S24e	coord: 50..200 score: 16.457998
None	No IPR available	GENE3D	3.30.70.3370		coord: 117..226 e-value: 1.6E-44 score: 152.7 coord: 45..74 e-value: 8.7E-6 score: 27.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 196..231
None	No IPR available	PANTHER	PTHR10496:SF18	40S RIBOSOMAL PROTEIN S24	coord: 118..231 coord: 47..71
IPR018098	Ribosomal S24e conserved site	PROSITE	PS00529	RIBOSOMAL_S24E	coord: 160..182
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 119..202

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC06G118810	CcUC06G118810	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC06G118810.1-exon	CcUC06G118810.1-exon-CicolChr06:14211238..14211447	exon
CcUC06G118810.1-exon	CcUC06G118810.1-exon-CicolChr06:14211993..14212178	exon
CcUC06G118810.1-exon	CcUC06G118810.1-exon-CicolChr06:14212402..14212572	exon
CcUC06G118810.1-exon	CcUC06G118810.1-exon-CicolChr06:14213251..14213337	exon
CcUC06G118810.1-exon	CcUC06G118810.1-exon-CicolChr06:14213430..14213695	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC06G118810.1-cds	CcUC06G118810.1-cds-CicolChr06:14211238..14211447	CDS
CcUC06G118810.1-cds	CcUC06G118810.1-cds-CicolChr06:14211993..14212178	CDS
CcUC06G118810.1-cds	CcUC06G118810.1-cds-CicolChr06:14212402..14212572	CDS
CcUC06G118810.1-cds	CcUC06G118810.1-cds-CicolChr06:14213251..14213337	CDS
CcUC06G118810.1-cds	CcUC06G118810.1-cds-CicolChr06:14213430..14213471	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC06G118810.1-three_prime_utr	CcUC06G118810.1-three_prime_utr-CicolChr06:14213472..14213695	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC06G118810.1	CcUC06G118810.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome